Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:963:9112
Extra
PDB:
ATOM 1 O3' C A 62 50.683 26.023 121.206 1.00 62.96 O
ATOM 2 P C A 63 50.659 27.620 121.423 1.00 62.51 P
ATOM 3 OP1 C A 63 49.587 27.914 122.407 1.00 61.86 O
ATOM 4 OP2 C A 63 50.628 28.290 120.095 1.00 62.71 O
ATOM 5 O5' C A 63 52.060 27.930 122.116 1.00 59.79 O
ATOM 6 C5' C A 63 52.327 27.491 123.458 1.00 58.46 C
ATOM 7 C4' C A 63 53.645 28.042 123.939 1.00 58.53 C
ATOM 8 O4' C A 63 54.712 27.535 123.102 1.00 58.80 O
ATOM 9 C3' C A 63 53.801 29.550 123.865 1.00 60.63 C
ATOM 10 O3' C A 63 53.206 30.175 125.002 1.00 63.66 O
ATOM 11 C2' C A 63 55.317 29.718 123.840 1.00 59.61 C
ATOM 12 O2' C A 63 55.906 29.615 125.119 1.00 58.99 O
ATOM 13 C1' C A 63 55.746 28.502 123.016 1.00 59.02 C
ATOM 14 N1 C A 63 56.053 28.764 121.591 1.00 59.43 N
ATOM 15 C2 C A 63 57.336 29.238 121.249 1.00 58.17 C
ATOM 16 O2 C A 63 58.161 29.454 122.151 1.00 56.34 O
ATOM 17 N3 C A 63 57.638 29.446 119.943 1.00 57.25 N
ATOM 18 C4 C A 63 56.725 29.210 118.998 1.00 56.65 C
ATOM 19 N4 C A 63 57.073 29.419 117.726 1.00 54.85 N
ATOM 20 C5 C A 63 55.412 28.747 119.316 1.00 57.07 C
ATOM 21 C6 C A 63 55.122 28.540 120.611 1.00 58.50 C
ATOM 22 P A A 64 52.426 31.571 124.834 1.00 66.67 P
ATOM 23 OP1 A A 64 52.003 32.025 126.188 1.00 65.91 O
ATOM 24 OP2 A A 64 51.408 31.414 123.760 1.00 65.19 O
ATOM 25 O5' A A 64 53.543 32.578 124.310 1.00 67.92 O
TER
ATOM 1 O3' U B 111 49.708 34.062 113.696 1.00 57.02 O
ATOM 2 P C B 112 50.126 32.571 114.102 1.00 56.53 P
ATOM 3 OP1 C B 112 50.029 31.754 112.870 1.00 56.67 O
ATOM 4 OP2 C B 112 49.348 32.183 115.305 1.00 58.36 O
ATOM 5 O5' C B 112 51.658 32.687 114.515 1.00 53.97 O
ATOM 6 C5' C B 112 52.623 33.186 113.583 1.00 52.95 C
ATOM 7 C4' C B 112 53.909 32.403 113.677 1.00 51.65 C
ATOM 8 O4' C B 112 54.703 32.862 114.805 1.00 52.82 O
ATOM 9 C3' C B 112 53.760 30.897 113.849 1.00 52.04 C
ATOM 10 O3' C B 112 54.720 30.254 113.039 1.00 52.52 O
ATOM 11 C2' C B 112 54.126 30.687 115.315 1.00 52.15 C
ATOM 12 O2' C B 112 54.642 29.399 115.588 1.00 53.48 O
ATOM 13 C1' C B 112 55.214 31.741 115.484 1.00 51.55 C
ATOM 14 N1 C B 112 55.578 32.124 116.865 1.00 50.34 N
ATOM 15 C2 C B 112 56.848 32.695 117.093 1.00 49.70 C
ATOM 16 O2 C B 112 57.609 32.893 116.126 1.00 47.44 O
ATOM 17 N3 C B 112 57.212 33.014 118.361 1.00 49.52 N
ATOM 18 C4 C B 112 56.373 32.785 119.376 1.00 47.88 C
ATOM 19 N4 C B 112 56.783 33.100 120.604 1.00 46.57 N
ATOM 20 C5 C B 112 55.076 32.222 119.174 1.00 47.94 C
ATOM 21 C6 C B 112 54.720 31.915 117.915 1.00 49.87 C
ATOM 22 P G B 113 54.240 29.480 111.724 1.00 55.95 P
ATOM 23 OP1 G B 113 53.250 28.444 112.122 1.00 56.10 O
ATOM 24 OP2 G B 113 55.450 29.089 110.949 1.00 55.72 O
ATOM 25 O5' G B 113 53.453 30.598 110.913 1.00 55.83 O
TER
ATOM 2 P C A 63 50.659 27.620 121.423 1.00 62.51 P
ATOM 3 OP1 C A 63 49.587 27.914 122.407 1.00 61.86 O
ATOM 4 OP2 C A 63 50.628 28.290 120.095 1.00 62.71 O
ATOM 5 O5' C A 63 52.060 27.930 122.116 1.00 59.79 O
ATOM 6 C5' C A 63 52.327 27.491 123.458 1.00 58.46 C
ATOM 7 C4' C A 63 53.645 28.042 123.939 1.00 58.53 C
ATOM 8 O4' C A 63 54.712 27.535 123.102 1.00 58.80 O
ATOM 9 C3' C A 63 53.801 29.550 123.865 1.00 60.63 C
ATOM 10 O3' C A 63 53.206 30.175 125.002 1.00 63.66 O
ATOM 11 C2' C A 63 55.317 29.718 123.840 1.00 59.61 C
ATOM 12 O2' C A 63 55.906 29.615 125.119 1.00 58.99 O
ATOM 13 C1' C A 63 55.746 28.502 123.016 1.00 59.02 C
ATOM 14 N1 C A 63 56.053 28.764 121.591 1.00 59.43 N
ATOM 15 C2 C A 63 57.336 29.238 121.249 1.00 58.17 C
ATOM 16 O2 C A 63 58.161 29.454 122.151 1.00 56.34 O
ATOM 17 N3 C A 63 57.638 29.446 119.943 1.00 57.25 N
ATOM 18 C4 C A 63 56.725 29.210 118.998 1.00 56.65 C
ATOM 19 N4 C A 63 57.073 29.419 117.726 1.00 54.85 N
ATOM 20 C5 C A 63 55.412 28.747 119.316 1.00 57.07 C
ATOM 21 C6 C A 63 55.122 28.540 120.611 1.00 58.50 C
ATOM 22 P A A 64 52.426 31.571 124.834 1.00 66.67 P
ATOM 23 OP1 A A 64 52.003 32.025 126.188 1.00 65.91 O
ATOM 24 OP2 A A 64 51.408 31.414 123.760 1.00 65.19 O
ATOM 25 O5' A A 64 53.543 32.578 124.310 1.00 67.92 O
TER
ATOM 1 O3' U B 111 49.708 34.062 113.696 1.00 57.02 O
ATOM 2 P C B 112 50.126 32.571 114.102 1.00 56.53 P
ATOM 3 OP1 C B 112 50.029 31.754 112.870 1.00 56.67 O
ATOM 4 OP2 C B 112 49.348 32.183 115.305 1.00 58.36 O
ATOM 5 O5' C B 112 51.658 32.687 114.515 1.00 53.97 O
ATOM 6 C5' C B 112 52.623 33.186 113.583 1.00 52.95 C
ATOM 7 C4' C B 112 53.909 32.403 113.677 1.00 51.65 C
ATOM 8 O4' C B 112 54.703 32.862 114.805 1.00 52.82 O
ATOM 9 C3' C B 112 53.760 30.897 113.849 1.00 52.04 C
ATOM 10 O3' C B 112 54.720 30.254 113.039 1.00 52.52 O
ATOM 11 C2' C B 112 54.126 30.687 115.315 1.00 52.15 C
ATOM 12 O2' C B 112 54.642 29.399 115.588 1.00 53.48 O
ATOM 13 C1' C B 112 55.214 31.741 115.484 1.00 51.55 C
ATOM 14 N1 C B 112 55.578 32.124 116.865 1.00 50.34 N
ATOM 15 C2 C B 112 56.848 32.695 117.093 1.00 49.70 C
ATOM 16 O2 C B 112 57.609 32.893 116.126 1.00 47.44 O
ATOM 17 N3 C B 112 57.212 33.014 118.361 1.00 49.52 N
ATOM 18 C4 C B 112 56.373 32.785 119.376 1.00 47.88 C
ATOM 19 N4 C B 112 56.783 33.100 120.604 1.00 46.57 N
ATOM 20 C5 C B 112 55.076 32.222 119.174 1.00 47.94 C
ATOM 21 C6 C B 112 54.720 31.915 117.915 1.00 49.87 C
ATOM 22 P G B 113 54.240 29.480 111.724 1.00 55.95 P
ATOM 23 OP1 G B 113 53.250 28.444 112.122 1.00 56.10 O
ATOM 24 OP2 G B 113 55.450 29.089 110.949 1.00 55.72 O
ATOM 25 O5' G B 113 53.453 30.598 110.913 1.00 55.83 O
TER
Atoms:
C2: (57.336,29.238,121.249)
OP1: (49.587,27.914,122.407)
OP2: (50.628,28.290,120.095)
C4: (56.725,29.210,118.998)
O5': (52.060,27.930,122.116)
C3': (53.801,29.550,123.865)
C1': (55.746,28.502,123.016)
O4': (54.712,27.535,123.102)
C5': (52.327,27.491,123.458)
P: (50.659,27.620,121.423)
O2: (58.161,29.454,122.151)
C4': (53.645,28.042,123.939)
C2': (55.317,29.718,123.840)
O2': (55.906,29.615,125.119)
N1: (56.053,28.764,121.591)
N3: (57.638,29.446,119.943)
N4: (57.073,29.419,117.726)
C6: (55.122,28.540,120.611)
C5: (55.412,28.747,119.316)
O3': (53.206,30.175,125.002)
OP1: (49.587,27.914,122.407)
OP2: (50.628,28.290,120.095)
C4: (56.725,29.210,118.998)
O5': (52.060,27.930,122.116)
C3': (53.801,29.550,123.865)
C1': (55.746,28.502,123.016)
O4': (54.712,27.535,123.102)
C5': (52.327,27.491,123.458)
P: (50.659,27.620,121.423)
O2: (58.161,29.454,122.151)
C4': (53.645,28.042,123.939)
C2': (55.317,29.718,123.840)
O2': (55.906,29.615,125.119)
N1: (56.053,28.764,121.591)
N3: (57.638,29.446,119.943)
N4: (57.073,29.419,117.726)
C6: (55.122,28.540,120.611)
C5: (55.412,28.747,119.316)
O3': (53.206,30.175,125.002)
C2: (56.848,32.695,117.093)
OP1: (50.029,31.754,112.870)
OP2: (49.348,32.183,115.305)
C4: (56.373,32.785,119.376)
O5': (51.658,32.687,114.515)
C3': (53.760,30.897,113.849)
C1': (55.214,31.741,115.484)
O4': (54.703,32.862,114.805)
C5': (52.623,33.186,113.583)
P: (50.126,32.571,114.102)
O2: (57.609,32.893,116.126)
C4': (53.909,32.403,113.677)
C2': (54.126,30.687,115.315)
O2': (54.642,29.399,115.588)
N1: (55.578,32.124,116.865)
N3: (57.212,33.014,118.361)
N4: (56.783,33.100,120.604)
C6: (54.720,31.915,117.915)
C5: (55.076,32.222,119.174)
O3': (54.720,30.254,113.039)
OP1: (50.029,31.754,112.870)
OP2: (49.348,32.183,115.305)
C4: (56.373,32.785,119.376)
O5': (51.658,32.687,114.515)
C3': (53.760,30.897,113.849)
C1': (55.214,31.741,115.484)
O4': (54.703,32.862,114.805)
C5': (52.623,33.186,113.583)
P: (50.126,32.571,114.102)
O2: (57.609,32.893,116.126)
C4': (53.909,32.403,113.677)
C2': (54.126,30.687,115.315)
O2': (54.642,29.399,115.588)
N1: (55.578,32.124,116.865)
N3: (57.212,33.014,118.361)
N4: (56.783,33.100,120.604)
C6: (54.720,31.915,117.915)
C5: (55.076,32.222,119.174)
O3': (54.720,30.254,113.039)
Image (generated by PyMOL):