Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:963:9112
Extra
PDB:
ATOM 1 O3' C A 62 50.946 26.166 121.626 1.00 71.85 O
ATOM 2 P C A 63 50.924 27.765 121.856 1.00 72.22 P
ATOM 3 OP1 C A 63 49.938 28.059 122.923 1.00 72.31 O
ATOM 4 OP2 C A 63 50.806 28.460 120.550 1.00 72.89 O
ATOM 5 O5' C A 63 52.361 28.072 122.467 1.00 71.16 O
ATOM 6 C5' C A 63 52.717 27.577 123.766 1.00 69.59 C
ATOM 7 C4' C A 63 54.030 28.166 124.209 1.00 69.29 C
ATOM 8 O4' C A 63 55.080 27.726 123.317 1.00 69.50 O
ATOM 9 C3' C A 63 54.115 29.680 124.170 1.00 69.65 C
ATOM 10 O3' C A 63 53.548 30.230 125.357 1.00 71.87 O
ATOM 11 C2' C A 63 55.618 29.912 124.092 1.00 69.49 C
ATOM 12 O2' C A 63 56.240 29.777 125.353 1.00 69.16 O
ATOM 13 C1' C A 63 56.067 28.737 123.221 1.00 69.46 C
ATOM 14 N1 C A 63 56.343 29.015 121.792 1.00 69.71 N
ATOM 15 C2 C A 63 57.625 29.471 121.421 1.00 69.35 C
ATOM 16 O2 C A 63 58.468 29.699 122.304 1.00 68.90 O
ATOM 17 N3 C A 63 57.908 29.652 120.109 1.00 68.54 N
ATOM 18 C4 C A 63 56.978 29.412 119.185 1.00 67.37 C
ATOM 19 N4 C A 63 57.316 29.572 117.910 1.00 67.11 N
ATOM 20 C5 C A 63 55.661 28.989 119.531 1.00 68.24 C
ATOM 21 C6 C A 63 55.387 28.808 120.832 1.00 69.78 C
ATOM 22 P A A 64 52.695 31.592 125.289 1.00 73.77 P
ATOM 23 OP1 A A 64 52.374 31.985 126.687 1.00 74.84 O
ATOM 24 OP2 A A 64 51.588 31.424 124.306 1.00 72.11 O
ATOM 25 O5' A A 64 53.730 32.667 124.729 1.00 75.47 O
TER
ATOM 1 O3' U B 111 49.874 34.269 114.108 1.00 58.28 O
ATOM 2 P C B 112 50.354 32.784 114.472 1.00 59.91 P
ATOM 3 OP1 C B 112 50.337 31.978 113.229 1.00 59.20 O
ATOM 4 OP2 C B 112 49.591 32.323 115.657 1.00 58.98 O
ATOM 5 O5' C B 112 51.878 32.968 114.881 1.00 58.91 O
ATOM 6 C5' C B 112 52.828 33.379 113.903 1.00 60.05 C
ATOM 7 C4' C B 112 54.077 32.546 113.996 1.00 60.70 C
ATOM 8 O4' C B 112 54.872 32.990 115.127 1.00 62.13 O
ATOM 9 C3' C B 112 53.883 31.044 114.171 1.00 61.40 C
ATOM 10 O3' C B 112 54.851 30.369 113.387 1.00 64.37 O
ATOM 11 C2' C B 112 54.218 30.834 115.643 1.00 61.32 C
ATOM 12 O2' C B 112 54.724 29.544 115.914 1.00 62.23 O
ATOM 13 C1' C B 112 55.326 31.862 115.832 1.00 60.86 C
ATOM 14 N1 C B 112 55.648 32.253 117.217 1.00 60.23 N
ATOM 15 C2 C B 112 56.923 32.795 117.485 1.00 59.80 C
ATOM 16 O2 C B 112 57.727 32.953 116.549 1.00 57.45 O
ATOM 17 N3 C B 112 57.244 33.129 118.757 1.00 59.65 N
ATOM 18 C4 C B 112 56.359 32.942 119.740 1.00 59.46 C
ATOM 19 N4 C B 112 56.724 33.277 120.979 1.00 58.20 N
ATOM 20 C5 C B 112 55.059 32.403 119.496 1.00 59.22 C
ATOM 21 C6 C B 112 54.747 32.082 118.233 1.00 58.90 C
ATOM 22 P G B 113 54.390 29.603 112.056 1.00 66.53 P
ATOM 23 OP1 G B 113 53.709 28.336 112.447 1.00 66.06 O
ATOM 24 OP2 G B 113 55.561 29.559 111.130 1.00 66.83 O
ATOM 25 O5' G B 113 53.299 30.595 111.456 1.00 65.33 O
TER
ATOM 2 P C A 63 50.924 27.765 121.856 1.00 72.22 P
ATOM 3 OP1 C A 63 49.938 28.059 122.923 1.00 72.31 O
ATOM 4 OP2 C A 63 50.806 28.460 120.550 1.00 72.89 O
ATOM 5 O5' C A 63 52.361 28.072 122.467 1.00 71.16 O
ATOM 6 C5' C A 63 52.717 27.577 123.766 1.00 69.59 C
ATOM 7 C4' C A 63 54.030 28.166 124.209 1.00 69.29 C
ATOM 8 O4' C A 63 55.080 27.726 123.317 1.00 69.50 O
ATOM 9 C3' C A 63 54.115 29.680 124.170 1.00 69.65 C
ATOM 10 O3' C A 63 53.548 30.230 125.357 1.00 71.87 O
ATOM 11 C2' C A 63 55.618 29.912 124.092 1.00 69.49 C
ATOM 12 O2' C A 63 56.240 29.777 125.353 1.00 69.16 O
ATOM 13 C1' C A 63 56.067 28.737 123.221 1.00 69.46 C
ATOM 14 N1 C A 63 56.343 29.015 121.792 1.00 69.71 N
ATOM 15 C2 C A 63 57.625 29.471 121.421 1.00 69.35 C
ATOM 16 O2 C A 63 58.468 29.699 122.304 1.00 68.90 O
ATOM 17 N3 C A 63 57.908 29.652 120.109 1.00 68.54 N
ATOM 18 C4 C A 63 56.978 29.412 119.185 1.00 67.37 C
ATOM 19 N4 C A 63 57.316 29.572 117.910 1.00 67.11 N
ATOM 20 C5 C A 63 55.661 28.989 119.531 1.00 68.24 C
ATOM 21 C6 C A 63 55.387 28.808 120.832 1.00 69.78 C
ATOM 22 P A A 64 52.695 31.592 125.289 1.00 73.77 P
ATOM 23 OP1 A A 64 52.374 31.985 126.687 1.00 74.84 O
ATOM 24 OP2 A A 64 51.588 31.424 124.306 1.00 72.11 O
ATOM 25 O5' A A 64 53.730 32.667 124.729 1.00 75.47 O
TER
ATOM 1 O3' U B 111 49.874 34.269 114.108 1.00 58.28 O
ATOM 2 P C B 112 50.354 32.784 114.472 1.00 59.91 P
ATOM 3 OP1 C B 112 50.337 31.978 113.229 1.00 59.20 O
ATOM 4 OP2 C B 112 49.591 32.323 115.657 1.00 58.98 O
ATOM 5 O5' C B 112 51.878 32.968 114.881 1.00 58.91 O
ATOM 6 C5' C B 112 52.828 33.379 113.903 1.00 60.05 C
ATOM 7 C4' C B 112 54.077 32.546 113.996 1.00 60.70 C
ATOM 8 O4' C B 112 54.872 32.990 115.127 1.00 62.13 O
ATOM 9 C3' C B 112 53.883 31.044 114.171 1.00 61.40 C
ATOM 10 O3' C B 112 54.851 30.369 113.387 1.00 64.37 O
ATOM 11 C2' C B 112 54.218 30.834 115.643 1.00 61.32 C
ATOM 12 O2' C B 112 54.724 29.544 115.914 1.00 62.23 O
ATOM 13 C1' C B 112 55.326 31.862 115.832 1.00 60.86 C
ATOM 14 N1 C B 112 55.648 32.253 117.217 1.00 60.23 N
ATOM 15 C2 C B 112 56.923 32.795 117.485 1.00 59.80 C
ATOM 16 O2 C B 112 57.727 32.953 116.549 1.00 57.45 O
ATOM 17 N3 C B 112 57.244 33.129 118.757 1.00 59.65 N
ATOM 18 C4 C B 112 56.359 32.942 119.740 1.00 59.46 C
ATOM 19 N4 C B 112 56.724 33.277 120.979 1.00 58.20 N
ATOM 20 C5 C B 112 55.059 32.403 119.496 1.00 59.22 C
ATOM 21 C6 C B 112 54.747 32.082 118.233 1.00 58.90 C
ATOM 22 P G B 113 54.390 29.603 112.056 1.00 66.53 P
ATOM 23 OP1 G B 113 53.709 28.336 112.447 1.00 66.06 O
ATOM 24 OP2 G B 113 55.561 29.559 111.130 1.00 66.83 O
ATOM 25 O5' G B 113 53.299 30.595 111.456 1.00 65.33 O
TER
Atoms:
C2: (57.625,29.471,121.421)
OP1: (49.938,28.059,122.923)
OP2: (50.806,28.460,120.550)
C4: (56.978,29.412,119.185)
O5': (52.361,28.072,122.467)
C3': (54.115,29.680,124.170)
C1': (56.067,28.737,123.221)
O4': (55.080,27.726,123.317)
C5': (52.717,27.577,123.766)
P: (50.924,27.765,121.856)
O2: (58.468,29.699,122.304)
C4': (54.030,28.166,124.209)
C2': (55.618,29.912,124.092)
O2': (56.240,29.777,125.353)
N1: (56.343,29.015,121.792)
N3: (57.908,29.652,120.109)
N4: (57.316,29.572,117.910)
C6: (55.387,28.808,120.832)
C5: (55.661,28.989,119.531)
O3': (53.548,30.230,125.357)
OP1: (49.938,28.059,122.923)
OP2: (50.806,28.460,120.550)
C4: (56.978,29.412,119.185)
O5': (52.361,28.072,122.467)
C3': (54.115,29.680,124.170)
C1': (56.067,28.737,123.221)
O4': (55.080,27.726,123.317)
C5': (52.717,27.577,123.766)
P: (50.924,27.765,121.856)
O2: (58.468,29.699,122.304)
C4': (54.030,28.166,124.209)
C2': (55.618,29.912,124.092)
O2': (56.240,29.777,125.353)
N1: (56.343,29.015,121.792)
N3: (57.908,29.652,120.109)
N4: (57.316,29.572,117.910)
C6: (55.387,28.808,120.832)
C5: (55.661,28.989,119.531)
O3': (53.548,30.230,125.357)
C2: (56.923,32.795,117.485)
OP1: (50.337,31.978,113.229)
OP2: (49.591,32.323,115.657)
C4: (56.359,32.942,119.740)
O5': (51.878,32.968,114.881)
C3': (53.883,31.044,114.171)
C1': (55.326,31.862,115.832)
O4': (54.872,32.990,115.127)
C5': (52.828,33.379,113.903)
P: (50.354,32.784,114.472)
O2: (57.727,32.953,116.549)
C4': (54.077,32.546,113.996)
C2': (54.218,30.834,115.643)
O2': (54.724,29.544,115.914)
N1: (55.648,32.253,117.217)
N3: (57.244,33.129,118.757)
N4: (56.724,33.277,120.979)
C6: (54.747,32.082,118.233)
C5: (55.059,32.403,119.496)
O3': (54.851,30.369,113.387)
OP1: (50.337,31.978,113.229)
OP2: (49.591,32.323,115.657)
C4: (56.359,32.942,119.740)
O5': (51.878,32.968,114.881)
C3': (53.883,31.044,114.171)
C1': (55.326,31.862,115.832)
O4': (54.872,32.990,115.127)
C5': (52.828,33.379,113.903)
P: (50.354,32.784,114.472)
O2: (57.727,32.953,116.549)
C4': (54.077,32.546,113.996)
C2': (54.218,30.834,115.643)
O2': (54.724,29.544,115.914)
N1: (55.648,32.253,117.217)
N3: (57.244,33.129,118.757)
N4: (56.724,33.277,120.979)
C6: (54.747,32.082,118.233)
C5: (55.059,32.403,119.496)
O3': (54.851,30.369,113.387)
Image (generated by PyMOL):