Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:963:9112
Extra
PDB:
ATOM 1 O3' C A 62 50.685 26.025 121.092 1.00 66.08 O
ATOM 2 P C A 63 50.747 27.611 121.373 1.00 68.08 P
ATOM 3 OP1 C A 63 49.752 27.937 122.420 1.00 68.01 O
ATOM 4 OP2 C A 63 50.700 28.338 120.075 1.00 67.69 O
ATOM 5 O5' C A 63 52.184 27.820 122.017 1.00 67.15 O
ATOM 6 C5' C A 63 52.441 27.434 123.369 1.00 67.38 C
ATOM 7 C4' C A 63 53.760 27.999 123.818 1.00 68.72 C
ATOM 8 O4' C A 63 54.806 27.477 122.963 1.00 68.89 O
ATOM 9 C3' C A 63 53.903 29.505 123.689 1.00 69.35 C
ATOM 10 O3' C A 63 53.327 30.169 124.810 1.00 72.17 O
ATOM 11 C2' C A 63 55.415 29.680 123.635 1.00 69.46 C
ATOM 12 O2' C A 63 56.021 29.630 124.911 1.00 68.83 O
ATOM 13 C1' C A 63 55.837 28.440 122.840 1.00 69.21 C
ATOM 14 N1 C A 63 56.129 28.665 121.408 1.00 69.16 N
ATOM 15 C2 C A 63 57.351 29.262 121.058 1.00 69.40 C
ATOM 16 O2 C A 63 58.131 29.607 121.959 1.00 68.26 O
ATOM 17 N3 C A 63 57.649 29.446 119.747 1.00 69.68 N
ATOM 18 C4 C A 63 56.782 29.063 118.805 1.00 68.47 C
ATOM 19 N4 C A 63 57.128 29.246 117.528 1.00 66.78 N
ATOM 20 C5 C A 63 55.526 28.471 119.132 1.00 68.49 C
ATOM 21 C6 C A 63 55.242 28.293 120.433 1.00 69.00 C
ATOM 22 P A A 64 52.475 31.516 124.595 1.00 75.55 P
ATOM 23 OP1 A A 64 51.960 31.949 125.922 1.00 74.59 O
ATOM 24 OP2 A A 64 51.519 31.276 123.482 1.00 75.44 O
ATOM 25 O5' A A 64 53.551 32.589 124.109 1.00 76.72 O
TER
ATOM 1 O3' U B 111 49.802 33.880 113.540 1.00 59.74 O
ATOM 2 P C B 112 50.331 32.422 113.943 1.00 59.63 P
ATOM 3 OP1 C B 112 50.390 31.594 112.716 1.00 58.82 O
ATOM 4 OP2 C B 112 49.547 31.955 115.112 1.00 60.11 O
ATOM 5 O5' C B 112 51.825 32.677 114.411 1.00 58.63 O
ATOM 6 C5' C B 112 52.775 33.205 113.492 1.00 59.19 C
ATOM 7 C4' C B 112 54.030 32.384 113.516 1.00 59.52 C
ATOM 8 O4' C B 112 54.886 32.814 114.607 1.00 60.41 O
ATOM 9 C3' C B 112 53.826 30.886 113.682 1.00 59.38 C
ATOM 10 O3' C B 112 54.745 30.199 112.863 1.00 60.43 O
ATOM 11 C2' C B 112 54.187 30.661 115.144 1.00 61.08 C
ATOM 12 O2' C B 112 54.673 29.357 115.385 1.00 62.66 O
ATOM 13 C1' C B 112 55.303 31.684 115.330 1.00 61.96 C
ATOM 14 N1 C B 112 55.628 32.084 116.715 1.00 64.04 N
ATOM 15 C2 C B 112 56.906 32.617 116.971 1.00 64.83 C
ATOM 16 O2 C B 112 57.691 32.786 116.020 1.00 64.92 O
ATOM 17 N3 C B 112 57.251 32.933 118.245 1.00 65.02 N
ATOM 18 C4 C B 112 56.379 32.742 119.241 1.00 65.17 C
ATOM 19 N4 C B 112 56.776 33.038 120.483 1.00 64.05 N
ATOM 20 C5 C B 112 55.062 32.231 119.007 1.00 64.89 C
ATOM 21 C6 C B 112 54.731 31.924 117.741 1.00 64.73 C
ATOM 22 P G B 113 54.211 29.449 111.553 1.00 63.04 P
ATOM 23 OP1 G B 113 53.215 28.431 111.987 1.00 62.47 O
ATOM 24 OP2 G B 113 55.377 29.040 110.722 1.00 62.45 O
ATOM 25 O5' G B 113 53.428 30.591 110.774 1.00 62.06 O
TER
ATOM 2 P C A 63 50.747 27.611 121.373 1.00 68.08 P
ATOM 3 OP1 C A 63 49.752 27.937 122.420 1.00 68.01 O
ATOM 4 OP2 C A 63 50.700 28.338 120.075 1.00 67.69 O
ATOM 5 O5' C A 63 52.184 27.820 122.017 1.00 67.15 O
ATOM 6 C5' C A 63 52.441 27.434 123.369 1.00 67.38 C
ATOM 7 C4' C A 63 53.760 27.999 123.818 1.00 68.72 C
ATOM 8 O4' C A 63 54.806 27.477 122.963 1.00 68.89 O
ATOM 9 C3' C A 63 53.903 29.505 123.689 1.00 69.35 C
ATOM 10 O3' C A 63 53.327 30.169 124.810 1.00 72.17 O
ATOM 11 C2' C A 63 55.415 29.680 123.635 1.00 69.46 C
ATOM 12 O2' C A 63 56.021 29.630 124.911 1.00 68.83 O
ATOM 13 C1' C A 63 55.837 28.440 122.840 1.00 69.21 C
ATOM 14 N1 C A 63 56.129 28.665 121.408 1.00 69.16 N
ATOM 15 C2 C A 63 57.351 29.262 121.058 1.00 69.40 C
ATOM 16 O2 C A 63 58.131 29.607 121.959 1.00 68.26 O
ATOM 17 N3 C A 63 57.649 29.446 119.747 1.00 69.68 N
ATOM 18 C4 C A 63 56.782 29.063 118.805 1.00 68.47 C
ATOM 19 N4 C A 63 57.128 29.246 117.528 1.00 66.78 N
ATOM 20 C5 C A 63 55.526 28.471 119.132 1.00 68.49 C
ATOM 21 C6 C A 63 55.242 28.293 120.433 1.00 69.00 C
ATOM 22 P A A 64 52.475 31.516 124.595 1.00 75.55 P
ATOM 23 OP1 A A 64 51.960 31.949 125.922 1.00 74.59 O
ATOM 24 OP2 A A 64 51.519 31.276 123.482 1.00 75.44 O
ATOM 25 O5' A A 64 53.551 32.589 124.109 1.00 76.72 O
TER
ATOM 1 O3' U B 111 49.802 33.880 113.540 1.00 59.74 O
ATOM 2 P C B 112 50.331 32.422 113.943 1.00 59.63 P
ATOM 3 OP1 C B 112 50.390 31.594 112.716 1.00 58.82 O
ATOM 4 OP2 C B 112 49.547 31.955 115.112 1.00 60.11 O
ATOM 5 O5' C B 112 51.825 32.677 114.411 1.00 58.63 O
ATOM 6 C5' C B 112 52.775 33.205 113.492 1.00 59.19 C
ATOM 7 C4' C B 112 54.030 32.384 113.516 1.00 59.52 C
ATOM 8 O4' C B 112 54.886 32.814 114.607 1.00 60.41 O
ATOM 9 C3' C B 112 53.826 30.886 113.682 1.00 59.38 C
ATOM 10 O3' C B 112 54.745 30.199 112.863 1.00 60.43 O
ATOM 11 C2' C B 112 54.187 30.661 115.144 1.00 61.08 C
ATOM 12 O2' C B 112 54.673 29.357 115.385 1.00 62.66 O
ATOM 13 C1' C B 112 55.303 31.684 115.330 1.00 61.96 C
ATOM 14 N1 C B 112 55.628 32.084 116.715 1.00 64.04 N
ATOM 15 C2 C B 112 56.906 32.617 116.971 1.00 64.83 C
ATOM 16 O2 C B 112 57.691 32.786 116.020 1.00 64.92 O
ATOM 17 N3 C B 112 57.251 32.933 118.245 1.00 65.02 N
ATOM 18 C4 C B 112 56.379 32.742 119.241 1.00 65.17 C
ATOM 19 N4 C B 112 56.776 33.038 120.483 1.00 64.05 N
ATOM 20 C5 C B 112 55.062 32.231 119.007 1.00 64.89 C
ATOM 21 C6 C B 112 54.731 31.924 117.741 1.00 64.73 C
ATOM 22 P G B 113 54.211 29.449 111.553 1.00 63.04 P
ATOM 23 OP1 G B 113 53.215 28.431 111.987 1.00 62.47 O
ATOM 24 OP2 G B 113 55.377 29.040 110.722 1.00 62.45 O
ATOM 25 O5' G B 113 53.428 30.591 110.774 1.00 62.06 O
TER
Atoms:
C2: (57.351,29.262,121.058)
OP1: (49.752,27.937,122.420)
OP2: (50.700,28.338,120.075)
C4: (56.782,29.063,118.805)
O5': (52.184,27.820,122.017)
C3': (53.903,29.505,123.689)
C1': (55.837,28.440,122.840)
O4': (54.806,27.477,122.963)
C5': (52.441,27.434,123.369)
P: (50.747,27.611,121.373)
O2: (58.131,29.607,121.959)
C4': (53.760,27.999,123.818)
C2': (55.415,29.680,123.635)
O2': (56.021,29.630,124.911)
N1: (56.129,28.665,121.408)
N3: (57.649,29.446,119.747)
N4: (57.128,29.246,117.528)
C6: (55.242,28.293,120.433)
C5: (55.526,28.471,119.132)
O3': (53.327,30.169,124.810)
OP1: (49.752,27.937,122.420)
OP2: (50.700,28.338,120.075)
C4: (56.782,29.063,118.805)
O5': (52.184,27.820,122.017)
C3': (53.903,29.505,123.689)
C1': (55.837,28.440,122.840)
O4': (54.806,27.477,122.963)
C5': (52.441,27.434,123.369)
P: (50.747,27.611,121.373)
O2: (58.131,29.607,121.959)
C4': (53.760,27.999,123.818)
C2': (55.415,29.680,123.635)
O2': (56.021,29.630,124.911)
N1: (56.129,28.665,121.408)
N3: (57.649,29.446,119.747)
N4: (57.128,29.246,117.528)
C6: (55.242,28.293,120.433)
C5: (55.526,28.471,119.132)
O3': (53.327,30.169,124.810)
C2: (56.906,32.617,116.971)
OP1: (50.390,31.594,112.716)
OP2: (49.547,31.955,115.112)
C4: (56.379,32.742,119.241)
O5': (51.825,32.677,114.411)
C3': (53.826,30.886,113.682)
C1': (55.303,31.684,115.330)
O4': (54.886,32.814,114.607)
C5': (52.775,33.205,113.492)
P: (50.331,32.422,113.943)
O2: (57.691,32.786,116.020)
C4': (54.030,32.384,113.516)
C2': (54.187,30.661,115.144)
O2': (54.673,29.357,115.385)
N1: (55.628,32.084,116.715)
N3: (57.251,32.933,118.245)
N4: (56.776,33.038,120.483)
C6: (54.731,31.924,117.741)
C5: (55.062,32.231,119.007)
O3': (54.745,30.199,112.863)
OP1: (50.390,31.594,112.716)
OP2: (49.547,31.955,115.112)
C4: (56.379,32.742,119.241)
O5': (51.825,32.677,114.411)
C3': (53.826,30.886,113.682)
C1': (55.303,31.684,115.330)
O4': (54.886,32.814,114.607)
C5': (52.775,33.205,113.492)
P: (50.331,32.422,113.943)
O2: (57.691,32.786,116.020)
C4': (54.030,32.384,113.516)
C2': (54.187,30.661,115.144)
O2': (54.673,29.357,115.385)
N1: (55.628,32.084,116.715)
N3: (57.251,32.933,118.245)
N4: (56.776,33.038,120.483)
C6: (54.731,31.924,117.741)
C5: (55.062,32.231,119.007)
O3': (54.745,30.199,112.863)
Image (generated by PyMOL):