Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YDH:A45:A46
Extra
PDB:
ATOM 1 O3' A A 44 22.318 -3.025 9.900 1.00 93.80 O
ATOM 2 P A A 45 23.256 -2.982 8.624 1.00 94.44 P
ATOM 3 OP1 A A 45 23.900 -4.321 8.466 1.00 93.88 O
ATOM 4 OP2 A A 45 23.997 -1.705 8.689 1.00 92.92 O
ATOM 5 O5' A A 45 22.260 -2.695 7.425 1.00 91.76 O
ATOM 6 C5' A A 45 21.544 -3.758 6.877 1.00 90.56 C
ATOM 7 C4' A A 45 20.563 -3.133 5.930 1.00 89.04 C
ATOM 8 O4' A A 45 20.214 -1.822 6.436 1.00 86.44 O
ATOM 9 C3' A A 45 21.137 -2.940 4.535 1.00 87.78 C
ATOM 10 O3' A A 45 20.150 -3.244 3.573 1.00 86.59 O
ATOM 11 C2' A A 45 21.549 -1.480 4.547 1.00 86.83 C
ATOM 12 O2' A A 45 21.485 -0.896 3.268 1.00 88.31 O
ATOM 13 C1' A A 45 20.502 -0.872 5.456 1.00 85.03 C
ATOM 14 N9 A A 45 20.930 0.275 6.207 1.00 82.72 N
ATOM 15 C8 A A 45 22.087 0.434 6.907 1.00 83.70 C
ATOM 16 N7 A A 45 22.189 1.599 7.508 1.00 82.82 N
ATOM 17 C5 A A 45 21.019 2.227 7.170 1.00 81.01 C
ATOM 18 C6 A A 45 20.526 3.494 7.484 1.00 81.87 C
ATOM 19 N6 A A 45 21.214 4.339 8.247 1.00 81.12 N
ATOM 20 N1 A A 45 19.319 3.856 6.973 1.00 83.75 N
ATOM 21 C2 A A 45 18.657 2.973 6.200 1.00 84.04 C
ATOM 22 N3 A A 45 19.027 1.733 5.847 1.00 83.21 N
ATOM 23 C4 A A 45 20.228 1.429 6.371 1.00 81.91 C
ATOM 24 P C A 46 19.964 -4.790 3.186 1.00 89.64 P
ATOM 25 OP1 C A 46 19.986 -5.625 4.418 1.00 88.38 O
ATOM 26 OP2 C A 46 20.940 -5.065 2.106 1.00 91.02 O
ATOM 27 O5' C A 46 18.515 -4.830 2.513 1.00 86.46 O
TER
ATOM 1 O3' A B 45 20.150 -3.244 3.573 1.00 86.59 O
ATOM 2 P C B 46 19.964 -4.790 3.186 1.00 89.64 P
ATOM 3 OP1 C B 46 19.986 -5.625 4.418 1.00 88.38 O
ATOM 4 OP2 C B 46 20.940 -5.065 2.106 1.00 91.02 O
ATOM 5 O5' C B 46 18.515 -4.830 2.513 1.00 86.46 O
ATOM 6 C5' C B 46 17.814 -6.075 2.326 1.00 84.38 C
ATOM 7 C4' C B 46 16.345 -5.820 2.026 1.00 82.56 C
ATOM 8 O4' C B 46 15.653 -5.419 3.228 1.00 79.94 O
ATOM 9 C3' C B 46 16.109 -4.657 1.077 1.00 82.12 C
ATOM 10 O3' C B 46 16.181 -5.093 -0.250 1.00 81.88 O
ATOM 11 C2' C B 46 14.704 -4.217 1.410 1.00 80.81 C
ATOM 12 O2' C B 46 13.703 -5.025 0.818 1.00 81.06 O
ATOM 13 C1' C B 46 14.762 -4.367 2.926 1.00 79.08 C
ATOM 14 N1 C B 46 15.222 -3.111 3.503 1.00 75.68 N
ATOM 15 C2 C B 46 14.330 -2.020 3.539 1.00 76.87 C
ATOM 16 O2 C B 46 13.180 -2.167 3.088 1.00 78.86 O
ATOM 17 N3 C B 46 14.734 -0.830 4.078 1.00 73.48 N
ATOM 18 C4 C B 46 15.977 -0.724 4.556 1.00 72.61 C
ATOM 19 N4 C B 46 16.373 0.445 5.060 1.00 70.18 N
ATOM 20 C5 C B 46 16.889 -1.822 4.528 1.00 74.05 C
ATOM 21 C6 C B 46 16.481 -2.980 3.992 1.00 74.43 C
ATOM 22 P C B 47 16.872 -4.175 -1.357 1.00 83.57 P
ATOM 23 OP1 C B 47 17.431 -5.173 -2.302 1.00 82.27 O
ATOM 24 OP2 C B 47 17.664 -3.077 -0.727 1.00 78.84 O
ATOM 25 O5' C B 47 15.710 -3.381 -2.100 1.00 82.97 O
TER
ATOM 2 P A A 45 23.256 -2.982 8.624 1.00 94.44 P
ATOM 3 OP1 A A 45 23.900 -4.321 8.466 1.00 93.88 O
ATOM 4 OP2 A A 45 23.997 -1.705 8.689 1.00 92.92 O
ATOM 5 O5' A A 45 22.260 -2.695 7.425 1.00 91.76 O
ATOM 6 C5' A A 45 21.544 -3.758 6.877 1.00 90.56 C
ATOM 7 C4' A A 45 20.563 -3.133 5.930 1.00 89.04 C
ATOM 8 O4' A A 45 20.214 -1.822 6.436 1.00 86.44 O
ATOM 9 C3' A A 45 21.137 -2.940 4.535 1.00 87.78 C
ATOM 10 O3' A A 45 20.150 -3.244 3.573 1.00 86.59 O
ATOM 11 C2' A A 45 21.549 -1.480 4.547 1.00 86.83 C
ATOM 12 O2' A A 45 21.485 -0.896 3.268 1.00 88.31 O
ATOM 13 C1' A A 45 20.502 -0.872 5.456 1.00 85.03 C
ATOM 14 N9 A A 45 20.930 0.275 6.207 1.00 82.72 N
ATOM 15 C8 A A 45 22.087 0.434 6.907 1.00 83.70 C
ATOM 16 N7 A A 45 22.189 1.599 7.508 1.00 82.82 N
ATOM 17 C5 A A 45 21.019 2.227 7.170 1.00 81.01 C
ATOM 18 C6 A A 45 20.526 3.494 7.484 1.00 81.87 C
ATOM 19 N6 A A 45 21.214 4.339 8.247 1.00 81.12 N
ATOM 20 N1 A A 45 19.319 3.856 6.973 1.00 83.75 N
ATOM 21 C2 A A 45 18.657 2.973 6.200 1.00 84.04 C
ATOM 22 N3 A A 45 19.027 1.733 5.847 1.00 83.21 N
ATOM 23 C4 A A 45 20.228 1.429 6.371 1.00 81.91 C
ATOM 24 P C A 46 19.964 -4.790 3.186 1.00 89.64 P
ATOM 25 OP1 C A 46 19.986 -5.625 4.418 1.00 88.38 O
ATOM 26 OP2 C A 46 20.940 -5.065 2.106 1.00 91.02 O
ATOM 27 O5' C A 46 18.515 -4.830 2.513 1.00 86.46 O
TER
ATOM 1 O3' A B 45 20.150 -3.244 3.573 1.00 86.59 O
ATOM 2 P C B 46 19.964 -4.790 3.186 1.00 89.64 P
ATOM 3 OP1 C B 46 19.986 -5.625 4.418 1.00 88.38 O
ATOM 4 OP2 C B 46 20.940 -5.065 2.106 1.00 91.02 O
ATOM 5 O5' C B 46 18.515 -4.830 2.513 1.00 86.46 O
ATOM 6 C5' C B 46 17.814 -6.075 2.326 1.00 84.38 C
ATOM 7 C4' C B 46 16.345 -5.820 2.026 1.00 82.56 C
ATOM 8 O4' C B 46 15.653 -5.419 3.228 1.00 79.94 O
ATOM 9 C3' C B 46 16.109 -4.657 1.077 1.00 82.12 C
ATOM 10 O3' C B 46 16.181 -5.093 -0.250 1.00 81.88 O
ATOM 11 C2' C B 46 14.704 -4.217 1.410 1.00 80.81 C
ATOM 12 O2' C B 46 13.703 -5.025 0.818 1.00 81.06 O
ATOM 13 C1' C B 46 14.762 -4.367 2.926 1.00 79.08 C
ATOM 14 N1 C B 46 15.222 -3.111 3.503 1.00 75.68 N
ATOM 15 C2 C B 46 14.330 -2.020 3.539 1.00 76.87 C
ATOM 16 O2 C B 46 13.180 -2.167 3.088 1.00 78.86 O
ATOM 17 N3 C B 46 14.734 -0.830 4.078 1.00 73.48 N
ATOM 18 C4 C B 46 15.977 -0.724 4.556 1.00 72.61 C
ATOM 19 N4 C B 46 16.373 0.445 5.060 1.00 70.18 N
ATOM 20 C5 C B 46 16.889 -1.822 4.528 1.00 74.05 C
ATOM 21 C6 C B 46 16.481 -2.980 3.992 1.00 74.43 C
ATOM 22 P C B 47 16.872 -4.175 -1.357 1.00 83.57 P
ATOM 23 OP1 C B 47 17.431 -5.173 -2.302 1.00 82.27 O
ATOM 24 OP2 C B 47 17.664 -3.077 -0.727 1.00 78.84 O
ATOM 25 O5' C B 47 15.710 -3.381 -2.100 1.00 82.97 O
TER
Atoms:
OP1: (23.900,-4.321,8.466)
OP2: (23.997,-1.705,8.689)
C3': (21.137,-2.940,4.535)
C1': (20.502,-0.872,5.456)
C5': (21.544,-3.758,6.877)
O4': (20.214,-1.822,6.436)
C8: (22.087,0.434,6.907)
O2': (21.485,-0.896,3.268)
C6: (20.526,3.494,7.484)
C5: (21.019,2.227,7.170)
C4: (20.228,1.429,6.371)
P: (23.256,-2.982,8.624)
C4': (20.563,-3.133,5.930)
C2': (21.549,-1.480,4.547)
C2: (18.657,2.973,6.200)
N1: (19.319,3.856,6.973)
N3: (19.027,1.733,5.847)
N6: (21.214,4.339,8.247)
N7: (22.189,1.599,7.508)
N9: (20.930,0.275,6.207)
O5': (22.260,-2.695,7.425)
O3': (20.150,-3.244,3.573)
OP2: (23.997,-1.705,8.689)
C3': (21.137,-2.940,4.535)
C1': (20.502,-0.872,5.456)
C5': (21.544,-3.758,6.877)
O4': (20.214,-1.822,6.436)
C8: (22.087,0.434,6.907)
O2': (21.485,-0.896,3.268)
C6: (20.526,3.494,7.484)
C5: (21.019,2.227,7.170)
C4: (20.228,1.429,6.371)
P: (23.256,-2.982,8.624)
C4': (20.563,-3.133,5.930)
C2': (21.549,-1.480,4.547)
C2: (18.657,2.973,6.200)
N1: (19.319,3.856,6.973)
N3: (19.027,1.733,5.847)
N6: (21.214,4.339,8.247)
N7: (22.189,1.599,7.508)
N9: (20.930,0.275,6.207)
O5': (22.260,-2.695,7.425)
O3': (20.150,-3.244,3.573)
C2: (14.330,-2.020,3.539)
OP1: (19.986,-5.625,4.418)
OP2: (20.940,-5.065,2.106)
C4: (15.977,-0.724,4.556)
O5': (18.515,-4.830,2.513)
C3': (16.109,-4.657,1.077)
C1': (14.762,-4.367,2.926)
O4': (15.653,-5.419,3.228)
C5': (17.814,-6.075,2.326)
P: (19.964,-4.790,3.186)
O2: (13.180,-2.167,3.088)
C4': (16.345,-5.820,2.026)
C2': (14.704,-4.217,1.410)
O2': (13.703,-5.025,0.818)
N1: (15.222,-3.111,3.503)
N3: (14.734,-0.830,4.078)
N4: (16.373,0.445,5.060)
C6: (16.481,-2.980,3.992)
C5: (16.889,-1.822,4.528)
O3': (16.181,-5.093,-0.250)
OP1: (19.986,-5.625,4.418)
OP2: (20.940,-5.065,2.106)
C4: (15.977,-0.724,4.556)
O5': (18.515,-4.830,2.513)
C3': (16.109,-4.657,1.077)
C1': (14.762,-4.367,2.926)
O4': (15.653,-5.419,3.228)
C5': (17.814,-6.075,2.326)
P: (19.964,-4.790,3.186)
O2: (13.180,-2.167,3.088)
C4': (16.345,-5.820,2.026)
C2': (14.704,-4.217,1.410)
O2': (13.703,-5.025,0.818)
N1: (15.222,-3.111,3.503)
N3: (14.734,-0.830,4.078)
N4: (16.373,0.445,5.060)
C6: (16.481,-2.980,3.992)
C5: (16.889,-1.822,4.528)
O3': (16.181,-5.093,-0.250)
Image (generated by PyMOL):