Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJW:0580:0554
Extra
PDB:
ATOM 1 O3' A A 579 -6.264 103.421 106.118 1.00 58.53 O
ATOM 2 P G A 580 -6.297 103.829 104.564 1.00 59.06 P
ATOM 3 OP1 G A 580 -6.009 105.285 104.510 1.00 57.81 O
ATOM 4 OP2 G A 580 -7.542 103.301 103.939 1.00 58.23 O
ATOM 5 O5' G A 580 -5.072 103.035 103.926 1.00 58.31 O
ATOM 6 C5' G A 580 -3.713 103.349 104.282 1.00 57.49 C
ATOM 7 C4' G A 580 -2.772 102.370 103.629 1.00 57.45 C
ATOM 8 O4' G A 580 -3.074 101.040 104.119 1.00 57.41 O
ATOM 9 C3' G A 580 -2.911 102.252 102.120 1.00 57.28 C
ATOM 10 O3' G A 580 -2.143 103.236 101.447 1.00 58.17 O
ATOM 11 C2' G A 580 -2.382 100.852 101.851 1.00 57.04 C
ATOM 12 O2' G A 580 -0.969 100.790 101.840 1.00 55.62 O
ATOM 13 C1' G A 580 -2.917 100.099 103.069 1.00 57.63 C
ATOM 14 N9 G A 580 -4.209 99.462 102.830 1.00 57.95 N
ATOM 15 C8 G A 580 -5.454 99.964 103.131 1.00 58.87 C
ATOM 16 N7 G A 580 -6.424 99.155 102.802 1.00 60.17 N
ATOM 17 C5 G A 580 -5.781 98.054 102.250 1.00 58.95 C
ATOM 18 C6 G A 580 -6.311 96.850 101.716 1.00 59.22 C
ATOM 19 O6 G A 580 -7.494 96.496 101.631 1.00 60.08 O
ATOM 20 N1 G A 580 -5.304 96.013 101.257 1.00 59.14 N
ATOM 21 C2 G A 580 -3.962 96.288 101.310 1.00 58.87 C
ATOM 22 N2 G A 580 -3.147 95.352 100.814 1.00 59.30 N
ATOM 23 N3 G A 580 -3.455 97.398 101.811 1.00 58.34 N
ATOM 24 C4 G A 580 -4.415 98.231 102.258 1.00 58.07 C
ATOM 25 P A A 581 -2.853 104.572 100.916 1.00 59.14 P
ATOM 26 OP1 A A 581 -2.831 105.520 102.062 1.00 58.57 O
ATOM 27 OP2 A A 581 -4.144 104.233 100.262 1.00 57.84 O
ATOM 28 O5' A A 581 -1.858 105.115 99.798 1.00 58.76 O
TER
ATOM 1 O3' A B 553 -0.839 91.286 97.854 1.00 47.30 O
ATOM 2 P A B 554 -1.082 90.771 99.358 1.00 49.80 P
ATOM 3 OP1 A B 554 -1.348 89.306 99.289 1.00 48.95 O
ATOM 4 OP2 A B 554 -2.067 91.673 100.017 1.00 49.84 O
ATOM 5 O5' A B 554 0.315 90.997 100.086 1.00 48.18 O
ATOM 6 C5' A B 554 1.514 90.378 99.591 1.00 46.38 C
ATOM 7 C4' A B 554 2.713 91.215 99.952 1.00 43.11 C
ATOM 8 O4' A B 554 2.548 92.536 99.377 1.00 44.16 O
ATOM 9 C3' A B 554 2.866 91.497 101.431 1.00 41.55 C
ATOM 10 O3' A B 554 3.479 90.422 102.111 1.00 40.75 O
ATOM 11 C2' A B 554 3.709 92.758 101.426 1.00 41.30 C
ATOM 12 O2' A B 554 5.061 92.496 101.119 1.00 40.60 O
ATOM 13 C1' A B 554 3.082 93.513 100.256 1.00 42.04 C
ATOM 14 N9 A B 554 1.994 94.394 100.675 1.00 40.46 N
ATOM 15 C8 A B 554 0.658 94.100 100.768 1.00 40.28 C
ATOM 16 N7 A B 554 -0.077 95.102 101.186 1.00 41.04 N
ATOM 17 C5 A B 554 0.836 96.128 101.375 1.00 42.55 C
ATOM 18 C6 A B 554 0.690 97.461 101.806 1.00 42.88 C
ATOM 19 N6 A B 554 -0.481 98.008 102.139 1.00 42.64 N
ATOM 20 N1 A B 554 1.804 98.221 101.885 1.00 42.85 N
ATOM 21 C2 A B 554 2.981 97.671 101.557 1.00 42.39 C
ATOM 22 N3 A B 554 3.247 96.435 101.140 1.00 43.34 N
ATOM 23 C4 A B 554 2.117 95.705 101.066 1.00 42.47 C
ATOM 24 P U B 555 2.911 89.975 103.542 1.00 41.24 P
ATOM 25 OP1 U B 555 3.859 88.979 104.107 1.00 39.14 O
ATOM 26 OP2 U B 555 1.485 89.609 103.362 1.00 40.89 O
ATOM 27 O5' U B 555 2.985 91.306 104.417 1.00 39.02 O
TER
ATOM 2 P G A 580 -6.297 103.829 104.564 1.00 59.06 P
ATOM 3 OP1 G A 580 -6.009 105.285 104.510 1.00 57.81 O
ATOM 4 OP2 G A 580 -7.542 103.301 103.939 1.00 58.23 O
ATOM 5 O5' G A 580 -5.072 103.035 103.926 1.00 58.31 O
ATOM 6 C5' G A 580 -3.713 103.349 104.282 1.00 57.49 C
ATOM 7 C4' G A 580 -2.772 102.370 103.629 1.00 57.45 C
ATOM 8 O4' G A 580 -3.074 101.040 104.119 1.00 57.41 O
ATOM 9 C3' G A 580 -2.911 102.252 102.120 1.00 57.28 C
ATOM 10 O3' G A 580 -2.143 103.236 101.447 1.00 58.17 O
ATOM 11 C2' G A 580 -2.382 100.852 101.851 1.00 57.04 C
ATOM 12 O2' G A 580 -0.969 100.790 101.840 1.00 55.62 O
ATOM 13 C1' G A 580 -2.917 100.099 103.069 1.00 57.63 C
ATOM 14 N9 G A 580 -4.209 99.462 102.830 1.00 57.95 N
ATOM 15 C8 G A 580 -5.454 99.964 103.131 1.00 58.87 C
ATOM 16 N7 G A 580 -6.424 99.155 102.802 1.00 60.17 N
ATOM 17 C5 G A 580 -5.781 98.054 102.250 1.00 58.95 C
ATOM 18 C6 G A 580 -6.311 96.850 101.716 1.00 59.22 C
ATOM 19 O6 G A 580 -7.494 96.496 101.631 1.00 60.08 O
ATOM 20 N1 G A 580 -5.304 96.013 101.257 1.00 59.14 N
ATOM 21 C2 G A 580 -3.962 96.288 101.310 1.00 58.87 C
ATOM 22 N2 G A 580 -3.147 95.352 100.814 1.00 59.30 N
ATOM 23 N3 G A 580 -3.455 97.398 101.811 1.00 58.34 N
ATOM 24 C4 G A 580 -4.415 98.231 102.258 1.00 58.07 C
ATOM 25 P A A 581 -2.853 104.572 100.916 1.00 59.14 P
ATOM 26 OP1 A A 581 -2.831 105.520 102.062 1.00 58.57 O
ATOM 27 OP2 A A 581 -4.144 104.233 100.262 1.00 57.84 O
ATOM 28 O5' A A 581 -1.858 105.115 99.798 1.00 58.76 O
TER
ATOM 1 O3' A B 553 -0.839 91.286 97.854 1.00 47.30 O
ATOM 2 P A B 554 -1.082 90.771 99.358 1.00 49.80 P
ATOM 3 OP1 A B 554 -1.348 89.306 99.289 1.00 48.95 O
ATOM 4 OP2 A B 554 -2.067 91.673 100.017 1.00 49.84 O
ATOM 5 O5' A B 554 0.315 90.997 100.086 1.00 48.18 O
ATOM 6 C5' A B 554 1.514 90.378 99.591 1.00 46.38 C
ATOM 7 C4' A B 554 2.713 91.215 99.952 1.00 43.11 C
ATOM 8 O4' A B 554 2.548 92.536 99.377 1.00 44.16 O
ATOM 9 C3' A B 554 2.866 91.497 101.431 1.00 41.55 C
ATOM 10 O3' A B 554 3.479 90.422 102.111 1.00 40.75 O
ATOM 11 C2' A B 554 3.709 92.758 101.426 1.00 41.30 C
ATOM 12 O2' A B 554 5.061 92.496 101.119 1.00 40.60 O
ATOM 13 C1' A B 554 3.082 93.513 100.256 1.00 42.04 C
ATOM 14 N9 A B 554 1.994 94.394 100.675 1.00 40.46 N
ATOM 15 C8 A B 554 0.658 94.100 100.768 1.00 40.28 C
ATOM 16 N7 A B 554 -0.077 95.102 101.186 1.00 41.04 N
ATOM 17 C5 A B 554 0.836 96.128 101.375 1.00 42.55 C
ATOM 18 C6 A B 554 0.690 97.461 101.806 1.00 42.88 C
ATOM 19 N6 A B 554 -0.481 98.008 102.139 1.00 42.64 N
ATOM 20 N1 A B 554 1.804 98.221 101.885 1.00 42.85 N
ATOM 21 C2 A B 554 2.981 97.671 101.557 1.00 42.39 C
ATOM 22 N3 A B 554 3.247 96.435 101.140 1.00 43.34 N
ATOM 23 C4 A B 554 2.117 95.705 101.066 1.00 42.47 C
ATOM 24 P U B 555 2.911 89.975 103.542 1.00 41.24 P
ATOM 25 OP1 U B 555 3.859 88.979 104.107 1.00 39.14 O
ATOM 26 OP2 U B 555 1.485 89.609 103.362 1.00 40.89 O
ATOM 27 O5' U B 555 2.985 91.306 104.417 1.00 39.02 O
TER
Atoms:
OP1: (-6.009,105.285,104.510)
OP2: (-7.542,103.301,103.939)
C3': (-2.911,102.252,102.120)
C1': (-2.917,100.099,103.069)
C5': (-3.713,103.349,104.282)
O6: (-7.494,96.496,101.631)
O4': (-3.074,101.040,104.119)
C8: (-5.454,99.964,103.131)
C2: (-3.962,96.288,101.310)
C6: (-6.311,96.850,101.716)
C5: (-5.781,98.054,102.250)
C4: (-4.415,98.231,102.258)
P: (-6.297,103.829,104.564)
C4': (-2.772,102.370,103.629)
C2': (-2.382,100.852,101.851)
O2': (-0.969,100.790,101.840)
N1: (-5.304,96.013,101.257)
N2: (-3.147,95.352,100.814)
N3: (-3.455,97.398,101.811)
N7: (-6.424,99.155,102.802)
N9: (-4.209,99.462,102.830)
O5': (-5.072,103.035,103.926)
O3': (-2.143,103.236,101.447)
OP2: (-7.542,103.301,103.939)
C3': (-2.911,102.252,102.120)
C1': (-2.917,100.099,103.069)
C5': (-3.713,103.349,104.282)
O6: (-7.494,96.496,101.631)
O4': (-3.074,101.040,104.119)
C8: (-5.454,99.964,103.131)
C2: (-3.962,96.288,101.310)
C6: (-6.311,96.850,101.716)
C5: (-5.781,98.054,102.250)
C4: (-4.415,98.231,102.258)
P: (-6.297,103.829,104.564)
C4': (-2.772,102.370,103.629)
C2': (-2.382,100.852,101.851)
O2': (-0.969,100.790,101.840)
N1: (-5.304,96.013,101.257)
N2: (-3.147,95.352,100.814)
N3: (-3.455,97.398,101.811)
N7: (-6.424,99.155,102.802)
N9: (-4.209,99.462,102.830)
O5': (-5.072,103.035,103.926)
O3': (-2.143,103.236,101.447)
OP1: (-1.348,89.306,99.289)
OP2: (-2.067,91.673,100.017)
C3': (2.866,91.497,101.431)
C1': (3.082,93.513,100.256)
C5': (1.514,90.378,99.591)
O4': (2.548,92.536,99.377)
C8: (0.658,94.100,100.768)
O2': (5.061,92.496,101.119)
C6: (0.690,97.461,101.806)
C5: (0.836,96.128,101.375)
C4: (2.117,95.705,101.066)
P: (-1.082,90.771,99.358)
C4': (2.713,91.215,99.952)
C2': (3.709,92.758,101.426)
C2: (2.981,97.671,101.557)
N1: (1.804,98.221,101.885)
N3: (3.247,96.435,101.140)
N6: (-0.481,98.008,102.139)
N7: (-0.077,95.102,101.186)
N9: (1.994,94.394,100.675)
O5': (0.315,90.997,100.086)
O3': (3.479,90.422,102.111)
OP2: (-2.067,91.673,100.017)
C3': (2.866,91.497,101.431)
C1': (3.082,93.513,100.256)
C5': (1.514,90.378,99.591)
O4': (2.548,92.536,99.377)
C8: (0.658,94.100,100.768)
O2': (5.061,92.496,101.119)
C6: (0.690,97.461,101.806)
C5: (0.836,96.128,101.375)
C4: (2.117,95.705,101.066)
P: (-1.082,90.771,99.358)
C4': (2.713,91.215,99.952)
C2': (3.709,92.758,101.426)
C2: (2.981,97.671,101.557)
N1: (1.804,98.221,101.885)
N3: (3.247,96.435,101.140)
N6: (-0.481,98.008,102.139)
N7: (-0.077,95.102,101.186)
N9: (1.994,94.394,100.675)
O5': (0.315,90.997,100.086)
O3': (3.479,90.422,102.111)
Image (generated by PyMOL):