Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11972:11975
Extra
PDB:
ATOM 1 O3' A A1971 19.693 -10.828 111.689 1.00 43.99 O
ATOM 2 P G A1972 20.665 -11.990 111.182 1.00 47.35 P
ATOM 3 OP1 G A1972 21.713 -11.345 110.387 1.00 47.07 O
ATOM 4 OP2 G A1972 19.865 -13.048 110.562 1.00 47.23 O
ATOM 5 O5' G A1972 21.255 -12.546 112.530 1.00 47.68 O
ATOM 6 C5' G A1972 22.529 -12.137 112.970 1.00 47.73 C
ATOM 7 C4' G A1972 22.872 -12.802 114.245 1.00 48.08 C
ATOM 8 O4' G A1972 21.727 -12.785 115.122 1.00 48.40 O
ATOM 9 C3' G A1972 23.227 -14.250 114.130 1.00 48.04 C
ATOM 10 O3' G A1972 24.560 -14.400 113.709 1.00 47.85 O
ATOM 11 C2' G A1972 22.971 -14.739 115.552 1.00 48.48 C
ATOM 12 O2' G A1972 24.014 -14.345 116.398 1.00 48.68 O
ATOM 13 C1' G A1972 21.743 -13.921 115.942 1.00 48.65 C
ATOM 14 N9 G A1972 20.514 -14.680 115.716 1.00 48.66 N
ATOM 15 C8 G A1972 19.643 -14.588 114.661 1.00 48.41 C
ATOM 16 N7 G A1972 18.662 -15.442 114.711 1.00 48.50 N
ATOM 17 C5 G A1972 18.965 -16.136 115.851 1.00 48.83 C
ATOM 18 C6 G A1972 18.274 -17.195 116.387 1.00 49.06 C
ATOM 19 O6 G A1972 17.251 -17.644 115.881 1.00 49.00 O
ATOM 20 N1 G A1972 18.852 -17.669 117.554 1.00 49.39 N
ATOM 21 C2 G A1972 19.969 -17.143 118.120 1.00 49.48 C
ATOM 22 N2 G A1972 20.378 -17.700 119.250 1.00 49.83 N
ATOM 23 N3 G A1972 20.634 -16.126 117.633 1.00 49.27 N
ATOM 24 C4 G A1972 20.077 -15.692 116.495 1.00 48.94 C
ATOM 25 P A A1973 25.003 -15.388 112.509 1.00 44.66 P
ATOM 26 OP1 A A1973 26.485 -15.133 112.295 1.00 44.54 O
ATOM 27 OP2 A A1973 24.082 -15.167 111.364 1.00 44.38 O
ATOM 28 O5' A A1973 24.796 -16.829 113.156 1.00 44.89 O
TER
ATOM 1 O3' A B1974 23.022 -21.690 120.783 1.00 47.05 O
ATOM 2 P A B1975 21.614 -21.552 121.508 1.00 57.85 P
ATOM 3 OP1 A B1975 21.226 -22.935 121.928 1.00 58.09 O
ATOM 4 OP2 A B1975 20.716 -20.797 120.610 1.00 57.56 O
ATOM 5 O5' A B1975 21.964 -20.681 122.776 1.00 58.21 O
ATOM 6 C5' A B1975 22.601 -21.256 123.893 1.00 58.60 C
ATOM 7 C4' A B1975 22.987 -20.195 124.863 1.00 58.88 C
ATOM 8 O4' A B1975 23.845 -19.255 124.191 1.00 58.56 O
ATOM 9 C3' A B1975 21.826 -19.375 125.405 1.00 59.09 C
ATOM 10 O3' A B1975 21.345 -19.892 126.627 1.00 59.58 O
ATOM 11 C2' A B1975 22.390 -17.975 125.561 1.00 59.07 C
ATOM 12 O2' A B1975 22.992 -17.808 126.846 1.00 59.51 O
ATOM 13 C1' A B1975 23.494 -17.940 124.516 1.00 58.65 C
ATOM 14 N9 A B1975 23.086 -17.262 123.293 1.00 58.21 N
ATOM 15 C8 A B1975 22.298 -17.791 122.341 1.00 57.94 C
ATOM 16 N7 A B1975 22.163 -16.969 121.345 1.00 57.58 N
ATOM 17 C5 A B1975 22.904 -15.852 121.684 1.00 57.64 C
ATOM 18 C6 A B1975 23.134 -14.645 121.019 1.00 57.38 C
ATOM 19 N6 A B1975 22.579 -14.430 119.833 1.00 57.02 N
ATOM 20 N1 A B1975 23.915 -13.701 121.608 1.00 57.54 N
ATOM 21 C2 A B1975 24.428 -13.996 122.815 1.00 57.94 C
ATOM 22 N3 A B1975 24.283 -15.123 123.535 1.00 58.21 N
ATOM 23 C4 A B1975 23.491 -16.017 122.902 1.00 58.03 C
ATOM 24 P G B1976 19.971 -20.737 126.716 1.00 90.02 P
ATOM 25 OP1 G B1976 20.352 -22.154 127.009 1.00 90.18 O
ATOM 26 OP2 G B1976 19.160 -20.434 125.485 1.00 89.61 O
ATOM 27 O5' G B1976 19.282 -20.090 127.989 1.00 90.51 O
TER
ATOM 2 P G A1972 20.665 -11.990 111.182 1.00 47.35 P
ATOM 3 OP1 G A1972 21.713 -11.345 110.387 1.00 47.07 O
ATOM 4 OP2 G A1972 19.865 -13.048 110.562 1.00 47.23 O
ATOM 5 O5' G A1972 21.255 -12.546 112.530 1.00 47.68 O
ATOM 6 C5' G A1972 22.529 -12.137 112.970 1.00 47.73 C
ATOM 7 C4' G A1972 22.872 -12.802 114.245 1.00 48.08 C
ATOM 8 O4' G A1972 21.727 -12.785 115.122 1.00 48.40 O
ATOM 9 C3' G A1972 23.227 -14.250 114.130 1.00 48.04 C
ATOM 10 O3' G A1972 24.560 -14.400 113.709 1.00 47.85 O
ATOM 11 C2' G A1972 22.971 -14.739 115.552 1.00 48.48 C
ATOM 12 O2' G A1972 24.014 -14.345 116.398 1.00 48.68 O
ATOM 13 C1' G A1972 21.743 -13.921 115.942 1.00 48.65 C
ATOM 14 N9 G A1972 20.514 -14.680 115.716 1.00 48.66 N
ATOM 15 C8 G A1972 19.643 -14.588 114.661 1.00 48.41 C
ATOM 16 N7 G A1972 18.662 -15.442 114.711 1.00 48.50 N
ATOM 17 C5 G A1972 18.965 -16.136 115.851 1.00 48.83 C
ATOM 18 C6 G A1972 18.274 -17.195 116.387 1.00 49.06 C
ATOM 19 O6 G A1972 17.251 -17.644 115.881 1.00 49.00 O
ATOM 20 N1 G A1972 18.852 -17.669 117.554 1.00 49.39 N
ATOM 21 C2 G A1972 19.969 -17.143 118.120 1.00 49.48 C
ATOM 22 N2 G A1972 20.378 -17.700 119.250 1.00 49.83 N
ATOM 23 N3 G A1972 20.634 -16.126 117.633 1.00 49.27 N
ATOM 24 C4 G A1972 20.077 -15.692 116.495 1.00 48.94 C
ATOM 25 P A A1973 25.003 -15.388 112.509 1.00 44.66 P
ATOM 26 OP1 A A1973 26.485 -15.133 112.295 1.00 44.54 O
ATOM 27 OP2 A A1973 24.082 -15.167 111.364 1.00 44.38 O
ATOM 28 O5' A A1973 24.796 -16.829 113.156 1.00 44.89 O
TER
ATOM 1 O3' A B1974 23.022 -21.690 120.783 1.00 47.05 O
ATOM 2 P A B1975 21.614 -21.552 121.508 1.00 57.85 P
ATOM 3 OP1 A B1975 21.226 -22.935 121.928 1.00 58.09 O
ATOM 4 OP2 A B1975 20.716 -20.797 120.610 1.00 57.56 O
ATOM 5 O5' A B1975 21.964 -20.681 122.776 1.00 58.21 O
ATOM 6 C5' A B1975 22.601 -21.256 123.893 1.00 58.60 C
ATOM 7 C4' A B1975 22.987 -20.195 124.863 1.00 58.88 C
ATOM 8 O4' A B1975 23.845 -19.255 124.191 1.00 58.56 O
ATOM 9 C3' A B1975 21.826 -19.375 125.405 1.00 59.09 C
ATOM 10 O3' A B1975 21.345 -19.892 126.627 1.00 59.58 O
ATOM 11 C2' A B1975 22.390 -17.975 125.561 1.00 59.07 C
ATOM 12 O2' A B1975 22.992 -17.808 126.846 1.00 59.51 O
ATOM 13 C1' A B1975 23.494 -17.940 124.516 1.00 58.65 C
ATOM 14 N9 A B1975 23.086 -17.262 123.293 1.00 58.21 N
ATOM 15 C8 A B1975 22.298 -17.791 122.341 1.00 57.94 C
ATOM 16 N7 A B1975 22.163 -16.969 121.345 1.00 57.58 N
ATOM 17 C5 A B1975 22.904 -15.852 121.684 1.00 57.64 C
ATOM 18 C6 A B1975 23.134 -14.645 121.019 1.00 57.38 C
ATOM 19 N6 A B1975 22.579 -14.430 119.833 1.00 57.02 N
ATOM 20 N1 A B1975 23.915 -13.701 121.608 1.00 57.54 N
ATOM 21 C2 A B1975 24.428 -13.996 122.815 1.00 57.94 C
ATOM 22 N3 A B1975 24.283 -15.123 123.535 1.00 58.21 N
ATOM 23 C4 A B1975 23.491 -16.017 122.902 1.00 58.03 C
ATOM 24 P G B1976 19.971 -20.737 126.716 1.00 90.02 P
ATOM 25 OP1 G B1976 20.352 -22.154 127.009 1.00 90.18 O
ATOM 26 OP2 G B1976 19.160 -20.434 125.485 1.00 89.61 O
ATOM 27 O5' G B1976 19.282 -20.090 127.989 1.00 90.51 O
TER
Atoms:
OP1: (21.713,-11.345,110.387)
OP2: (19.865,-13.048,110.562)
C3': (23.227,-14.250,114.130)
C1': (21.743,-13.921,115.942)
C5': (22.529,-12.137,112.970)
O6: (17.251,-17.644,115.881)
O4': (21.727,-12.785,115.122)
C8: (19.643,-14.588,114.661)
C2: (19.969,-17.143,118.120)
C6: (18.274,-17.195,116.387)
C5: (18.965,-16.136,115.851)
C4: (20.077,-15.692,116.495)
P: (20.665,-11.990,111.182)
C4': (22.872,-12.802,114.245)
C2': (22.971,-14.739,115.552)
O2': (24.014,-14.345,116.398)
N1: (18.852,-17.669,117.554)
N2: (20.378,-17.700,119.250)
N3: (20.634,-16.126,117.633)
N7: (18.662,-15.442,114.711)
N9: (20.514,-14.680,115.716)
O5': (21.255,-12.546,112.530)
O3': (24.560,-14.400,113.709)
OP2: (19.865,-13.048,110.562)
C3': (23.227,-14.250,114.130)
C1': (21.743,-13.921,115.942)
C5': (22.529,-12.137,112.970)
O6: (17.251,-17.644,115.881)
O4': (21.727,-12.785,115.122)
C8: (19.643,-14.588,114.661)
C2: (19.969,-17.143,118.120)
C6: (18.274,-17.195,116.387)
C5: (18.965,-16.136,115.851)
C4: (20.077,-15.692,116.495)
P: (20.665,-11.990,111.182)
C4': (22.872,-12.802,114.245)
C2': (22.971,-14.739,115.552)
O2': (24.014,-14.345,116.398)
N1: (18.852,-17.669,117.554)
N2: (20.378,-17.700,119.250)
N3: (20.634,-16.126,117.633)
N7: (18.662,-15.442,114.711)
N9: (20.514,-14.680,115.716)
O5': (21.255,-12.546,112.530)
O3': (24.560,-14.400,113.709)
OP1: (21.226,-22.935,121.928)
OP2: (20.716,-20.797,120.610)
C3': (21.826,-19.375,125.405)
C1': (23.494,-17.940,124.516)
C5': (22.601,-21.256,123.893)
O4': (23.845,-19.255,124.191)
C8: (22.298,-17.791,122.341)
O2': (22.992,-17.808,126.846)
C6: (23.134,-14.645,121.019)
C5: (22.904,-15.852,121.684)
C4: (23.491,-16.017,122.902)
P: (21.614,-21.552,121.508)
C4': (22.987,-20.195,124.863)
C2': (22.390,-17.975,125.561)
C2: (24.428,-13.996,122.815)
N1: (23.915,-13.701,121.608)
N3: (24.283,-15.123,123.535)
N6: (22.579,-14.430,119.833)
N7: (22.163,-16.969,121.345)
N9: (23.086,-17.262,123.293)
O5': (21.964,-20.681,122.776)
O3': (21.345,-19.892,126.627)
OP2: (20.716,-20.797,120.610)
C3': (21.826,-19.375,125.405)
C1': (23.494,-17.940,124.516)
C5': (22.601,-21.256,123.893)
O4': (23.845,-19.255,124.191)
C8: (22.298,-17.791,122.341)
O2': (22.992,-17.808,126.846)
C6: (23.134,-14.645,121.019)
C5: (22.904,-15.852,121.684)
C4: (23.491,-16.017,122.902)
P: (21.614,-21.552,121.508)
C4': (22.987,-20.195,124.863)
C2': (22.390,-17.975,125.561)
C2: (24.428,-13.996,122.815)
N1: (23.915,-13.701,121.608)
N3: (24.283,-15.123,123.535)
N6: (22.579,-14.430,119.833)
N7: (22.163,-16.969,121.345)
N9: (23.086,-17.262,123.293)
O5': (21.964,-20.681,122.776)
O3': (21.345,-19.892,126.627)
Image (generated by PyMOL):