Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0552:0581
Extra
PDB:
ATOM 1 O3' C A 551 -10.975 96.264 94.079 1.00 56.79 O
ATOM 2 P G A 552 -10.773 95.135 95.203 1.00 57.63 P
ATOM 3 OP1 G A 552 -10.735 93.817 94.517 1.00 56.25 O
ATOM 4 OP2 G A 552 -11.752 95.368 96.293 1.00 58.79 O
ATOM 5 O5' G A 552 -9.329 95.444 95.803 1.00 59.62 O
ATOM 6 C5' G A 552 -8.184 95.603 94.941 1.00 57.37 C
ATOM 7 C4' G A 552 -7.088 96.350 95.661 1.00 55.99 C
ATOM 8 O4' G A 552 -7.547 97.682 96.007 1.00 57.31 O
ATOM 9 C3' G A 552 -6.640 95.761 96.985 1.00 54.52 C
ATOM 10 O3' G A 552 -5.722 94.699 96.748 1.00 51.06 O
ATOM 11 C2' G A 552 -5.999 96.965 97.667 1.00 55.45 C
ATOM 12 O2' G A 552 -4.685 97.210 97.221 1.00 56.93 O
ATOM 13 C1' G A 552 -6.906 98.108 97.196 1.00 57.90 C
ATOM 14 N9 G A 552 -7.926 98.486 98.169 1.00 61.58 N
ATOM 15 C8 G A 552 -9.076 97.797 98.473 1.00 63.62 C
ATOM 16 N7 G A 552 -9.761 98.346 99.440 1.00 65.59 N
ATOM 17 C5 G A 552 -9.028 99.473 99.786 1.00 65.16 C
ATOM 18 C6 G A 552 -9.265 100.453 100.791 1.00 66.55 C
ATOM 19 O6 G A 552 -10.189 100.511 101.615 1.00 67.84 O
ATOM 20 N1 G A 552 -8.280 101.430 100.790 1.00 66.81 N
ATOM 21 C2 G A 552 -7.201 101.462 99.945 1.00 66.80 C
ATOM 22 N2 G A 552 -6.370 102.499 100.105 1.00 68.22 N
ATOM 23 N3 G A 552 -6.957 100.550 99.016 1.00 64.94 N
ATOM 24 C4 G A 552 -7.906 99.590 98.994 1.00 63.56 C
ATOM 25 P A A 553 -5.200 93.784 97.968 1.00 52.97 P
ATOM 26 OP1 A A 553 -5.738 92.412 97.772 1.00 49.89 O
ATOM 27 OP2 A A 553 -5.399 94.479 99.273 1.00 49.07 O
ATOM 28 O5' A A 553 -3.639 93.675 97.679 1.00 52.35 O
TER
ATOM 1 O3' G B 580 -2.001 103.453 101.628 1.00 53.58 O
ATOM 2 P A B 581 -2.674 104.810 101.100 1.00 55.99 P
ATOM 3 OP1 A B 581 -2.600 105.794 102.219 1.00 53.87 O
ATOM 4 OP2 A B 581 -3.985 104.502 100.480 1.00 54.87 O
ATOM 5 O5' A B 581 -1.684 105.285 99.943 1.00 56.33 O
ATOM 6 C5' A B 581 -0.316 105.666 100.233 1.00 54.42 C
ATOM 7 C4' A B 581 0.589 105.304 99.074 1.00 54.50 C
ATOM 8 O4' A B 581 0.726 103.861 98.977 1.00 56.27 O
ATOM 9 C3' A B 581 0.090 105.732 97.707 1.00 52.99 C
ATOM 10 O3' A B 581 0.415 107.088 97.446 1.00 49.01 O
ATOM 11 C2' A B 581 0.801 104.761 96.778 1.00 54.96 C
ATOM 12 O2' A B 581 2.136 105.140 96.540 1.00 55.32 O
ATOM 13 C1' A B 581 0.776 103.475 97.611 1.00 58.43 C
ATOM 14 N9 A B 581 -0.395 102.643 97.341 1.00 63.44 N
ATOM 15 C8 A B 581 -1.457 102.420 98.180 1.00 66.60 C
ATOM 16 N7 A B 581 -2.393 101.663 97.662 1.00 69.20 N
ATOM 17 C5 A B 581 -1.914 101.361 96.398 1.00 68.95 C
ATOM 18 C6 A B 581 -2.454 100.606 95.341 1.00 70.38 C
ATOM 19 N6 A B 581 -3.647 100.009 95.393 1.00 71.72 N
ATOM 20 N1 A B 581 -1.722 100.491 94.214 1.00 70.78 N
ATOM 21 C2 A B 581 -0.531 101.105 94.162 1.00 71.59 C
ATOM 22 N3 A B 581 0.080 101.851 95.086 1.00 70.31 N
ATOM 23 C4 A B 581 -0.675 101.943 96.192 1.00 67.22 C
ATOM 24 P C B 582 -0.694 108.061 96.813 1.00 47.27 P
ATOM 25 OP1 C B 582 -0.141 109.437 96.748 1.00 46.17 O
ATOM 26 OP2 C B 582 -1.959 107.828 97.540 1.00 50.14 O
ATOM 27 O5' C B 582 -0.865 107.504 95.331 1.00 45.49 O
TER
ATOM 2 P G A 552 -10.773 95.135 95.203 1.00 57.63 P
ATOM 3 OP1 G A 552 -10.735 93.817 94.517 1.00 56.25 O
ATOM 4 OP2 G A 552 -11.752 95.368 96.293 1.00 58.79 O
ATOM 5 O5' G A 552 -9.329 95.444 95.803 1.00 59.62 O
ATOM 6 C5' G A 552 -8.184 95.603 94.941 1.00 57.37 C
ATOM 7 C4' G A 552 -7.088 96.350 95.661 1.00 55.99 C
ATOM 8 O4' G A 552 -7.547 97.682 96.007 1.00 57.31 O
ATOM 9 C3' G A 552 -6.640 95.761 96.985 1.00 54.52 C
ATOM 10 O3' G A 552 -5.722 94.699 96.748 1.00 51.06 O
ATOM 11 C2' G A 552 -5.999 96.965 97.667 1.00 55.45 C
ATOM 12 O2' G A 552 -4.685 97.210 97.221 1.00 56.93 O
ATOM 13 C1' G A 552 -6.906 98.108 97.196 1.00 57.90 C
ATOM 14 N9 G A 552 -7.926 98.486 98.169 1.00 61.58 N
ATOM 15 C8 G A 552 -9.076 97.797 98.473 1.00 63.62 C
ATOM 16 N7 G A 552 -9.761 98.346 99.440 1.00 65.59 N
ATOM 17 C5 G A 552 -9.028 99.473 99.786 1.00 65.16 C
ATOM 18 C6 G A 552 -9.265 100.453 100.791 1.00 66.55 C
ATOM 19 O6 G A 552 -10.189 100.511 101.615 1.00 67.84 O
ATOM 20 N1 G A 552 -8.280 101.430 100.790 1.00 66.81 N
ATOM 21 C2 G A 552 -7.201 101.462 99.945 1.00 66.80 C
ATOM 22 N2 G A 552 -6.370 102.499 100.105 1.00 68.22 N
ATOM 23 N3 G A 552 -6.957 100.550 99.016 1.00 64.94 N
ATOM 24 C4 G A 552 -7.906 99.590 98.994 1.00 63.56 C
ATOM 25 P A A 553 -5.200 93.784 97.968 1.00 52.97 P
ATOM 26 OP1 A A 553 -5.738 92.412 97.772 1.00 49.89 O
ATOM 27 OP2 A A 553 -5.399 94.479 99.273 1.00 49.07 O
ATOM 28 O5' A A 553 -3.639 93.675 97.679 1.00 52.35 O
TER
ATOM 1 O3' G B 580 -2.001 103.453 101.628 1.00 53.58 O
ATOM 2 P A B 581 -2.674 104.810 101.100 1.00 55.99 P
ATOM 3 OP1 A B 581 -2.600 105.794 102.219 1.00 53.87 O
ATOM 4 OP2 A B 581 -3.985 104.502 100.480 1.00 54.87 O
ATOM 5 O5' A B 581 -1.684 105.285 99.943 1.00 56.33 O
ATOM 6 C5' A B 581 -0.316 105.666 100.233 1.00 54.42 C
ATOM 7 C4' A B 581 0.589 105.304 99.074 1.00 54.50 C
ATOM 8 O4' A B 581 0.726 103.861 98.977 1.00 56.27 O
ATOM 9 C3' A B 581 0.090 105.732 97.707 1.00 52.99 C
ATOM 10 O3' A B 581 0.415 107.088 97.446 1.00 49.01 O
ATOM 11 C2' A B 581 0.801 104.761 96.778 1.00 54.96 C
ATOM 12 O2' A B 581 2.136 105.140 96.540 1.00 55.32 O
ATOM 13 C1' A B 581 0.776 103.475 97.611 1.00 58.43 C
ATOM 14 N9 A B 581 -0.395 102.643 97.341 1.00 63.44 N
ATOM 15 C8 A B 581 -1.457 102.420 98.180 1.00 66.60 C
ATOM 16 N7 A B 581 -2.393 101.663 97.662 1.00 69.20 N
ATOM 17 C5 A B 581 -1.914 101.361 96.398 1.00 68.95 C
ATOM 18 C6 A B 581 -2.454 100.606 95.341 1.00 70.38 C
ATOM 19 N6 A B 581 -3.647 100.009 95.393 1.00 71.72 N
ATOM 20 N1 A B 581 -1.722 100.491 94.214 1.00 70.78 N
ATOM 21 C2 A B 581 -0.531 101.105 94.162 1.00 71.59 C
ATOM 22 N3 A B 581 0.080 101.851 95.086 1.00 70.31 N
ATOM 23 C4 A B 581 -0.675 101.943 96.192 1.00 67.22 C
ATOM 24 P C B 582 -0.694 108.061 96.813 1.00 47.27 P
ATOM 25 OP1 C B 582 -0.141 109.437 96.748 1.00 46.17 O
ATOM 26 OP2 C B 582 -1.959 107.828 97.540 1.00 50.14 O
ATOM 27 O5' C B 582 -0.865 107.504 95.331 1.00 45.49 O
TER
Atoms:
OP1: (-10.735,93.817,94.517)
OP2: (-11.752,95.368,96.293)
C3': (-6.640,95.761,96.985)
C1': (-6.906,98.108,97.196)
C5': (-8.184,95.603,94.941)
O6: (-10.189,100.511,101.615)
O4': (-7.547,97.682,96.007)
C8: (-9.076,97.797,98.473)
C2: (-7.201,101.462,99.945)
C6: (-9.265,100.453,100.791)
C5: (-9.028,99.473,99.786)
C4: (-7.906,99.590,98.994)
P: (-10.773,95.135,95.203)
C4': (-7.088,96.350,95.661)
C2': (-5.999,96.965,97.667)
O2': (-4.685,97.210,97.221)
N1: (-8.280,101.430,100.790)
N2: (-6.370,102.499,100.105)
N3: (-6.957,100.550,99.016)
N7: (-9.761,98.346,99.440)
N9: (-7.926,98.486,98.169)
O5': (-9.329,95.444,95.803)
O3': (-5.722,94.699,96.748)
OP2: (-11.752,95.368,96.293)
C3': (-6.640,95.761,96.985)
C1': (-6.906,98.108,97.196)
C5': (-8.184,95.603,94.941)
O6: (-10.189,100.511,101.615)
O4': (-7.547,97.682,96.007)
C8: (-9.076,97.797,98.473)
C2: (-7.201,101.462,99.945)
C6: (-9.265,100.453,100.791)
C5: (-9.028,99.473,99.786)
C4: (-7.906,99.590,98.994)
P: (-10.773,95.135,95.203)
C4': (-7.088,96.350,95.661)
C2': (-5.999,96.965,97.667)
O2': (-4.685,97.210,97.221)
N1: (-8.280,101.430,100.790)
N2: (-6.370,102.499,100.105)
N3: (-6.957,100.550,99.016)
N7: (-9.761,98.346,99.440)
N9: (-7.926,98.486,98.169)
O5': (-9.329,95.444,95.803)
O3': (-5.722,94.699,96.748)
OP1: (-2.600,105.794,102.219)
OP2: (-3.985,104.502,100.480)
C3': (0.090,105.732,97.707)
C1': (0.776,103.475,97.611)
C5': (-0.316,105.666,100.233)
O4': (0.726,103.861,98.977)
C8: (-1.457,102.420,98.180)
O2': (2.136,105.140,96.540)
C6: (-2.454,100.606,95.341)
C5: (-1.914,101.361,96.398)
C4: (-0.675,101.943,96.192)
P: (-2.674,104.810,101.100)
C4': (0.589,105.304,99.074)
C2': (0.801,104.761,96.778)
C2: (-0.531,101.105,94.162)
N1: (-1.722,100.491,94.214)
N3: (0.080,101.851,95.086)
N6: (-3.647,100.009,95.393)
N7: (-2.393,101.663,97.662)
N9: (-0.395,102.643,97.341)
O5': (-1.684,105.285,99.943)
O3': (0.415,107.088,97.446)
OP2: (-3.985,104.502,100.480)
C3': (0.090,105.732,97.707)
C1': (0.776,103.475,97.611)
C5': (-0.316,105.666,100.233)
O4': (0.726,103.861,98.977)
C8: (-1.457,102.420,98.180)
O2': (2.136,105.140,96.540)
C6: (-2.454,100.606,95.341)
C5: (-1.914,101.361,96.398)
C4: (-0.675,101.943,96.192)
P: (-2.674,104.810,101.100)
C4': (0.589,105.304,99.074)
C2': (0.801,104.761,96.778)
C2: (-0.531,101.105,94.162)
N1: (-1.722,100.491,94.214)
N3: (0.080,101.851,95.086)
N6: (-3.647,100.009,95.393)
N7: (-2.393,101.663,97.662)
N9: (-0.395,102.643,97.341)
O5': (-1.684,105.285,99.943)
O3': (0.415,107.088,97.446)
Image (generated by PyMOL):