Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1K8A:A580:A554
Extra
PDB:
ATOM 1 O3' A A 579 -6.014 103.705 106.685 1.00 60.28 O
ATOM 2 P G A 580 -5.874 104.200 105.154 1.00 59.98 P
ATOM 3 OP1 G A 580 -5.417 105.615 105.095 1.00 57.70 O
ATOM 4 OP2 G A 580 -7.104 103.797 104.434 1.00 60.03 O
ATOM 5 O5' G A 580 -4.698 103.305 104.576 1.00 59.79 O
ATOM 6 C5' G A 580 -3.336 103.506 104.980 1.00 57.77 C
ATOM 7 C4' G A 580 -2.464 102.487 104.300 1.00 56.12 C
ATOM 8 O4' G A 580 -2.879 101.150 104.697 1.00 57.22 O
ATOM 9 C3' G A 580 -2.613 102.471 102.791 1.00 55.88 C
ATOM 10 O3' G A 580 -1.761 103.429 102.189 1.00 54.42 O
ATOM 11 C2' G A 580 -2.129 101.075 102.445 1.00 56.41 C
ATOM 12 O2' G A 580 -0.719 101.058 102.472 1.00 58.39 O
ATOM 13 C1' G A 580 -2.696 100.253 103.608 1.00 57.07 C
ATOM 14 N9 G A 580 -3.971 99.598 103.296 1.00 58.23 N
ATOM 15 C8 G A 580 -5.237 100.101 103.514 1.00 59.70 C
ATOM 16 N7 G A 580 -6.190 99.300 103.106 1.00 60.15 N
ATOM 17 C5 G A 580 -5.520 98.196 102.591 1.00 58.91 C
ATOM 18 C6 G A 580 -6.026 96.997 102.002 1.00 59.23 C
ATOM 19 O6 G A 580 -7.209 96.652 101.823 1.00 61.06 O
ATOM 20 N1 G A 580 -4.995 96.151 101.610 1.00 57.90 N
ATOM 21 C2 G A 580 -3.659 96.404 101.770 1.00 57.65 C
ATOM 22 N2 G A 580 -2.833 95.459 101.320 1.00 56.57 N
ATOM 23 N3 G A 580 -3.170 97.502 102.327 1.00 58.27 N
ATOM 24 C4 G A 580 -4.149 98.355 102.707 1.00 58.45 C
ATOM 25 P A A 581 -2.365 104.794 101.611 1.00 55.40 P
ATOM 26 OP1 A A 581 -2.220 105.830 102.662 1.00 53.68 O
ATOM 27 OP2 A A 581 -3.683 104.574 100.978 1.00 55.59 O
ATOM 28 O5' A A 581 -1.355 105.159 100.448 1.00 55.63 O
TER
ATOM 1 O3' A B 553 -0.537 91.386 98.324 1.00 50.08 O
ATOM 2 P A B 554 -0.621 90.808 99.826 1.00 50.70 P
ATOM 3 OP1 A B 554 -0.680 89.325 99.646 1.00 48.69 O
ATOM 4 OP2 A B 554 -1.664 91.505 100.622 1.00 50.43 O
ATOM 5 O5' A B 554 0.777 91.168 100.497 1.00 49.49 O
ATOM 6 C5' A B 554 1.988 90.543 100.053 1.00 47.29 C
ATOM 7 C4' A B 554 3.154 91.403 100.422 1.00 45.08 C
ATOM 8 O4' A B 554 2.950 92.733 99.898 1.00 45.77 O
ATOM 9 C3' A B 554 3.257 91.660 101.904 1.00 44.50 C
ATOM 10 O3' A B 554 3.906 90.587 102.538 1.00 42.65 O
ATOM 11 C2' A B 554 4.091 92.924 101.961 1.00 44.92 C
ATOM 12 O2' A B 554 5.458 92.694 101.736 1.00 46.31 O
ATOM 13 C1' A B 554 3.533 93.683 100.772 1.00 45.38 C
ATOM 14 N9 A B 554 2.487 94.576 101.223 1.00 46.39 N
ATOM 15 C8 A B 554 1.163 94.291 101.337 1.00 48.36 C
ATOM 16 N7 A B 554 0.440 95.310 101.729 1.00 50.19 N
ATOM 17 C5 A B 554 1.360 96.328 101.892 1.00 48.05 C
ATOM 18 C6 A B 554 1.216 97.657 102.261 1.00 47.87 C
ATOM 19 N6 A B 554 0.033 98.211 102.505 1.00 48.04 N
ATOM 20 N1 A B 554 2.331 98.412 102.352 1.00 47.97 N
ATOM 21 C2 A B 554 3.509 97.846 102.058 1.00 48.45 C
ATOM 22 N3 A B 554 3.767 96.600 101.670 1.00 48.27 N
ATOM 23 C4 A B 554 2.631 95.885 101.606 1.00 47.53 C
ATOM 24 P U B 555 3.391 90.108 103.960 1.00 41.02 P
ATOM 25 OP1 U B 555 4.376 89.141 104.462 1.00 37.66 O
ATOM 26 OP2 U B 555 1.997 89.693 103.716 1.00 40.26 O
ATOM 27 O5' U B 555 3.420 91.433 104.844 1.00 37.34 O
TER
ATOM 2 P G A 580 -5.874 104.200 105.154 1.00 59.98 P
ATOM 3 OP1 G A 580 -5.417 105.615 105.095 1.00 57.70 O
ATOM 4 OP2 G A 580 -7.104 103.797 104.434 1.00 60.03 O
ATOM 5 O5' G A 580 -4.698 103.305 104.576 1.00 59.79 O
ATOM 6 C5' G A 580 -3.336 103.506 104.980 1.00 57.77 C
ATOM 7 C4' G A 580 -2.464 102.487 104.300 1.00 56.12 C
ATOM 8 O4' G A 580 -2.879 101.150 104.697 1.00 57.22 O
ATOM 9 C3' G A 580 -2.613 102.471 102.791 1.00 55.88 C
ATOM 10 O3' G A 580 -1.761 103.429 102.189 1.00 54.42 O
ATOM 11 C2' G A 580 -2.129 101.075 102.445 1.00 56.41 C
ATOM 12 O2' G A 580 -0.719 101.058 102.472 1.00 58.39 O
ATOM 13 C1' G A 580 -2.696 100.253 103.608 1.00 57.07 C
ATOM 14 N9 G A 580 -3.971 99.598 103.296 1.00 58.23 N
ATOM 15 C8 G A 580 -5.237 100.101 103.514 1.00 59.70 C
ATOM 16 N7 G A 580 -6.190 99.300 103.106 1.00 60.15 N
ATOM 17 C5 G A 580 -5.520 98.196 102.591 1.00 58.91 C
ATOM 18 C6 G A 580 -6.026 96.997 102.002 1.00 59.23 C
ATOM 19 O6 G A 580 -7.209 96.652 101.823 1.00 61.06 O
ATOM 20 N1 G A 580 -4.995 96.151 101.610 1.00 57.90 N
ATOM 21 C2 G A 580 -3.659 96.404 101.770 1.00 57.65 C
ATOM 22 N2 G A 580 -2.833 95.459 101.320 1.00 56.57 N
ATOM 23 N3 G A 580 -3.170 97.502 102.327 1.00 58.27 N
ATOM 24 C4 G A 580 -4.149 98.355 102.707 1.00 58.45 C
ATOM 25 P A A 581 -2.365 104.794 101.611 1.00 55.40 P
ATOM 26 OP1 A A 581 -2.220 105.830 102.662 1.00 53.68 O
ATOM 27 OP2 A A 581 -3.683 104.574 100.978 1.00 55.59 O
ATOM 28 O5' A A 581 -1.355 105.159 100.448 1.00 55.63 O
TER
ATOM 1 O3' A B 553 -0.537 91.386 98.324 1.00 50.08 O
ATOM 2 P A B 554 -0.621 90.808 99.826 1.00 50.70 P
ATOM 3 OP1 A B 554 -0.680 89.325 99.646 1.00 48.69 O
ATOM 4 OP2 A B 554 -1.664 91.505 100.622 1.00 50.43 O
ATOM 5 O5' A B 554 0.777 91.168 100.497 1.00 49.49 O
ATOM 6 C5' A B 554 1.988 90.543 100.053 1.00 47.29 C
ATOM 7 C4' A B 554 3.154 91.403 100.422 1.00 45.08 C
ATOM 8 O4' A B 554 2.950 92.733 99.898 1.00 45.77 O
ATOM 9 C3' A B 554 3.257 91.660 101.904 1.00 44.50 C
ATOM 10 O3' A B 554 3.906 90.587 102.538 1.00 42.65 O
ATOM 11 C2' A B 554 4.091 92.924 101.961 1.00 44.92 C
ATOM 12 O2' A B 554 5.458 92.694 101.736 1.00 46.31 O
ATOM 13 C1' A B 554 3.533 93.683 100.772 1.00 45.38 C
ATOM 14 N9 A B 554 2.487 94.576 101.223 1.00 46.39 N
ATOM 15 C8 A B 554 1.163 94.291 101.337 1.00 48.36 C
ATOM 16 N7 A B 554 0.440 95.310 101.729 1.00 50.19 N
ATOM 17 C5 A B 554 1.360 96.328 101.892 1.00 48.05 C
ATOM 18 C6 A B 554 1.216 97.657 102.261 1.00 47.87 C
ATOM 19 N6 A B 554 0.033 98.211 102.505 1.00 48.04 N
ATOM 20 N1 A B 554 2.331 98.412 102.352 1.00 47.97 N
ATOM 21 C2 A B 554 3.509 97.846 102.058 1.00 48.45 C
ATOM 22 N3 A B 554 3.767 96.600 101.670 1.00 48.27 N
ATOM 23 C4 A B 554 2.631 95.885 101.606 1.00 47.53 C
ATOM 24 P U B 555 3.391 90.108 103.960 1.00 41.02 P
ATOM 25 OP1 U B 555 4.376 89.141 104.462 1.00 37.66 O
ATOM 26 OP2 U B 555 1.997 89.693 103.716 1.00 40.26 O
ATOM 27 O5' U B 555 3.420 91.433 104.844 1.00 37.34 O
TER
Atoms:
OP1: (-5.417,105.615,105.095)
OP2: (-7.104,103.797,104.434)
C3': (-2.613,102.471,102.791)
C1': (-2.696,100.253,103.608)
C5': (-3.336,103.506,104.980)
O6: (-7.209,96.652,101.823)
O4': (-2.879,101.150,104.697)
C8: (-5.237,100.101,103.514)
C2: (-3.659,96.404,101.770)
C6: (-6.026,96.997,102.002)
C5: (-5.520,98.196,102.591)
C4: (-4.149,98.355,102.707)
P: (-5.874,104.200,105.154)
C4': (-2.464,102.487,104.300)
C2': (-2.129,101.075,102.445)
O2': (-0.719,101.058,102.472)
N1: (-4.995,96.151,101.610)
N2: (-2.833,95.459,101.320)
N3: (-3.170,97.502,102.327)
N7: (-6.190,99.300,103.106)
N9: (-3.971,99.598,103.296)
O5': (-4.698,103.305,104.576)
O3': (-1.761,103.429,102.189)
OP2: (-7.104,103.797,104.434)
C3': (-2.613,102.471,102.791)
C1': (-2.696,100.253,103.608)
C5': (-3.336,103.506,104.980)
O6: (-7.209,96.652,101.823)
O4': (-2.879,101.150,104.697)
C8: (-5.237,100.101,103.514)
C2: (-3.659,96.404,101.770)
C6: (-6.026,96.997,102.002)
C5: (-5.520,98.196,102.591)
C4: (-4.149,98.355,102.707)
P: (-5.874,104.200,105.154)
C4': (-2.464,102.487,104.300)
C2': (-2.129,101.075,102.445)
O2': (-0.719,101.058,102.472)
N1: (-4.995,96.151,101.610)
N2: (-2.833,95.459,101.320)
N3: (-3.170,97.502,102.327)
N7: (-6.190,99.300,103.106)
N9: (-3.971,99.598,103.296)
O5': (-4.698,103.305,104.576)
O3': (-1.761,103.429,102.189)
OP1: (-0.680,89.325,99.646)
OP2: (-1.664,91.505,100.622)
C3': (3.257,91.660,101.904)
C1': (3.533,93.683,100.772)
C5': (1.988,90.543,100.053)
O4': (2.950,92.733,99.898)
C8: (1.163,94.291,101.337)
O2': (5.458,92.694,101.736)
C6: (1.216,97.657,102.261)
C5: (1.360,96.328,101.892)
C4: (2.631,95.885,101.606)
P: (-0.621,90.808,99.826)
C4': (3.154,91.403,100.422)
C2': (4.091,92.924,101.961)
C2: (3.509,97.846,102.058)
N1: (2.331,98.412,102.352)
N3: (3.767,96.600,101.670)
N6: (0.033,98.211,102.505)
N7: (0.440,95.310,101.729)
N9: (2.487,94.576,101.223)
O5': (0.777,91.168,100.497)
O3': (3.906,90.587,102.538)
OP2: (-1.664,91.505,100.622)
C3': (3.257,91.660,101.904)
C1': (3.533,93.683,100.772)
C5': (1.988,90.543,100.053)
O4': (2.950,92.733,99.898)
C8: (1.163,94.291,101.337)
O2': (5.458,92.694,101.736)
C6: (1.216,97.657,102.261)
C5: (1.360,96.328,101.892)
C4: (2.631,95.885,101.606)
P: (-0.621,90.808,99.826)
C4': (3.154,91.403,100.422)
C2': (4.091,92.924,101.961)
C2: (3.509,97.846,102.058)
N1: (2.331,98.412,102.352)
N3: (3.767,96.600,101.670)
N6: (0.033,98.211,102.505)
N7: (0.440,95.310,101.729)
N9: (2.487,94.576,101.223)
O5': (0.777,91.168,100.497)
O3': (3.906,90.587,102.538)
Image (generated by PyMOL):