Doublet info:
Details
Nucleotide types:
CG
Description:
SH_tran: SH_tran
Program used:
JS
Has errors:
False
Source
PDB id:
SPEC:B6:A6
Extra
PDB:
ATOM 67 O3' C A1187 51.160 103.792 141.287 1.00 47.82 O
ATOM 68 P C A1188 51.725 104.400 139.921 1.00 45.42 P
ATOM 69 OP1 C A1188 52.520 105.620 140.190 1.00 47.43 O
ATOM 70 OP2 C A1188 50.612 104.713 138.998 1.00 48.26 O
ATOM 71 O5' C A1188 52.618 103.197 139.353 1.00 44.83 O
ATOM 72 C5' C A1188 53.988 102.994 139.766 1.00 44.77 C
ATOM 73 C4' C A1188 54.587 101.750 139.096 1.00 47.19 C
ATOM 74 O4' C A1188 53.937 100.536 139.527 1.00 47.13 O
ATOM 75 C3' C A1188 54.413 101.783 137.580 1.00 48.59 C
ATOM 76 O3' C A1188 55.381 102.670 136.971 1.00 53.07 O
ATOM 77 C2' C A1188 54.660 100.314 137.249 1.00 47.04 C
ATOM 78 O2' C A1188 56.051 100.010 137.214 1.00 46.44 O
ATOM 79 C1' C A1188 53.965 99.597 138.416 1.00 47.11 C
ATOM 80 N1 C A1188 52.588 99.134 138.066 1.00 45.96 N
ATOM 81 C2 C A1188 52.434 97.898 137.398 1.00 46.39 C
ATOM 82 O2 C A1188 53.403 97.211 137.079 1.00 47.62 O
ATOM 83 N3 C A1188 51.161 97.479 137.107 1.00 46.29 N
ATOM 84 C4 C A1188 50.112 98.187 137.408 1.00 45.90 C
ATOM 85 N4 C A1188 48.893 97.674 137.080 1.00 46.31 N
ATOM 86 C5 C A1188 50.206 99.472 138.064 1.00 46.08 C
ATOM 87 C6 C A1188 51.456 99.889 138.357 1.00 46.09 C
ATOM 88 H5'1 C A1188 53.996 102.862 140.834 1.00 0.00 H
ATOM 89 H5'2 C A1188 54.548 103.862 139.465 1.00 0.00 H
ATOM 90 H4' C A1188 55.629 101.664 139.355 1.00 0.00 H
ATOM 91 H3' C A1188 53.416 102.064 137.295 1.00 0.00 H
ATOM 92 H1' C A1188 54.523 98.723 138.686 1.00 0.00 H
ATOM 93 H2' C A1188 54.262 100.032 136.290 1.00 0.00 H
ATOM 94 HO'2 C A1188 56.467 100.523 136.516 1.00 0.00 H
ATOM 95 H6 C A1188 51.605 100.837 138.834 1.00 0.00 H
ATOM 96 H41 C A1188 48.066 98.185 137.293 1.00 0.00 H
ATOM 97 H42 C A1188 48.835 96.789 136.628 1.00 0.00 H
ATOM 98 H5 C A1188 49.368 100.090 138.321 1.00 0.00 H
ATOM 99 P A A1189 55.315 103.114 135.431 1.00 55.56 P
ATOM 100 OP1 A A1189 54.726 102.072 134.560 1.00 55.36 O
ATOM 101 OP2 A A1189 56.667 103.480 134.956 1.00 53.25 O
ATOM 102 O5' A A1189 54.388 104.417 135.510 1.00 51.35 O
TER
ATOM 1 O3' G B 6 51.709 90.720 134.144 1.00 43.59 O
ATOM 2 P G B 7 52.196 90.046 135.509 1.00 44.30 P
ATOM 3 OP1 G B 7 51.725 88.645 135.584 1.00 44.72 O
ATOM 4 OP2 G B 7 51.699 90.815 136.671 1.00 43.65 O
ATOM 5 O5' G B 7 53.789 90.150 135.387 1.00 39.95 O
ATOM 6 C5' G B 7 54.570 89.157 134.687 1.00 37.03 C
ATOM 7 C4' G B 7 56.040 89.585 134.621 1.00 37.70 C
ATOM 8 O4' G B 7 56.186 90.830 133.900 1.00 36.54 O
ATOM 9 C3' G B 7 56.618 89.835 136.013 1.00 37.21 C
ATOM 10 O3' G B 7 57.051 88.606 136.642 1.00 36.35 O
ATOM 11 C2' G B 7 57.811 90.713 135.649 1.00 34.97 C
ATOM 12 O2' G B 7 58.915 89.958 135.156 1.00 35.30 O
ATOM 13 C1' G B 7 57.232 91.601 134.545 1.00 34.71 C
ATOM 14 N9 G B 7 56.697 92.872 135.080 1.00 32.72 N
ATOM 15 C8 G B 7 55.391 93.293 135.194 1.00 30.97 C
ATOM 16 N7 G B 7 55.255 94.442 135.744 1.00 30.00 N
ATOM 17 C5 G B 7 56.531 94.849 136.019 1.00 29.55 C
ATOM 18 C6 G B 7 57.015 96.067 136.644 1.00 29.13 C
ATOM 19 O6 G B 7 56.383 97.023 137.080 1.00 28.71 O
ATOM 20 N1 G B 7 58.409 96.059 136.727 1.00 30.31 N
ATOM 21 C2 G B 7 59.223 95.056 136.281 1.00 29.96 C
ATOM 22 N2 G B 7 60.566 95.212 136.437 1.00 32.13 N
ATOM 23 N3 G B 7 58.784 93.963 135.719 1.00 30.48 N
ATOM 24 C4 G B 7 57.434 93.890 135.606 1.00 28.75 C
ATOM 25 H5'1 G B 7 54.181 89.075 133.687 1.00 0.00 H
ATOM 26 H5'2 G B 7 54.488 88.232 135.229 1.00 0.00 H
ATOM 27 H4' G B 7 56.617 88.840 134.100 1.00 0.00 H
ATOM 28 H3' G B 7 55.934 90.368 136.650 1.00 0.00 H
ATOM 29 H1' G B 7 58.004 91.884 133.857 1.00 0.00 H
ATOM 30 H2' G B 7 58.176 91.272 136.488 1.00 0.00 H
ATOM 31 HO'2 G B 7 58.620 89.405 134.429 1.00 0.00 H
ATOM 32 H8 G B 7 54.580 92.688 134.844 1.00 0.00 H
ATOM 33 H1 G B 7 58.818 96.864 137.151 1.00 0.00 H
ATOM 34 H21 G B 7 61.186 94.500 136.122 1.00 0.00 H
ATOM 35 H22 G B 7 60.924 96.036 136.864 1.00 0.00 H
ATOM 36 P U B 8 57.043 88.416 138.234 1.00 34.47 P
ATOM 37 OP1 U B 8 57.546 87.070 138.591 1.00 39.78 O
ATOM 38 OP2 U B 8 55.684 88.615 138.782 1.00 31.97 O
ATOM 39 O5' U B 8 58.016 89.576 138.758 1.00 31.99 O
TER
ATOM 68 P C A1188 51.725 104.400 139.921 1.00 45.42 P
ATOM 69 OP1 C A1188 52.520 105.620 140.190 1.00 47.43 O
ATOM 70 OP2 C A1188 50.612 104.713 138.998 1.00 48.26 O
ATOM 71 O5' C A1188 52.618 103.197 139.353 1.00 44.83 O
ATOM 72 C5' C A1188 53.988 102.994 139.766 1.00 44.77 C
ATOM 73 C4' C A1188 54.587 101.750 139.096 1.00 47.19 C
ATOM 74 O4' C A1188 53.937 100.536 139.527 1.00 47.13 O
ATOM 75 C3' C A1188 54.413 101.783 137.580 1.00 48.59 C
ATOM 76 O3' C A1188 55.381 102.670 136.971 1.00 53.07 O
ATOM 77 C2' C A1188 54.660 100.314 137.249 1.00 47.04 C
ATOM 78 O2' C A1188 56.051 100.010 137.214 1.00 46.44 O
ATOM 79 C1' C A1188 53.965 99.597 138.416 1.00 47.11 C
ATOM 80 N1 C A1188 52.588 99.134 138.066 1.00 45.96 N
ATOM 81 C2 C A1188 52.434 97.898 137.398 1.00 46.39 C
ATOM 82 O2 C A1188 53.403 97.211 137.079 1.00 47.62 O
ATOM 83 N3 C A1188 51.161 97.479 137.107 1.00 46.29 N
ATOM 84 C4 C A1188 50.112 98.187 137.408 1.00 45.90 C
ATOM 85 N4 C A1188 48.893 97.674 137.080 1.00 46.31 N
ATOM 86 C5 C A1188 50.206 99.472 138.064 1.00 46.08 C
ATOM 87 C6 C A1188 51.456 99.889 138.357 1.00 46.09 C
ATOM 88 H5'1 C A1188 53.996 102.862 140.834 1.00 0.00 H
ATOM 89 H5'2 C A1188 54.548 103.862 139.465 1.00 0.00 H
ATOM 90 H4' C A1188 55.629 101.664 139.355 1.00 0.00 H
ATOM 91 H3' C A1188 53.416 102.064 137.295 1.00 0.00 H
ATOM 92 H1' C A1188 54.523 98.723 138.686 1.00 0.00 H
ATOM 93 H2' C A1188 54.262 100.032 136.290 1.00 0.00 H
ATOM 94 HO'2 C A1188 56.467 100.523 136.516 1.00 0.00 H
ATOM 95 H6 C A1188 51.605 100.837 138.834 1.00 0.00 H
ATOM 96 H41 C A1188 48.066 98.185 137.293 1.00 0.00 H
ATOM 97 H42 C A1188 48.835 96.789 136.628 1.00 0.00 H
ATOM 98 H5 C A1188 49.368 100.090 138.321 1.00 0.00 H
ATOM 99 P A A1189 55.315 103.114 135.431 1.00 55.56 P
ATOM 100 OP1 A A1189 54.726 102.072 134.560 1.00 55.36 O
ATOM 101 OP2 A A1189 56.667 103.480 134.956 1.00 53.25 O
ATOM 102 O5' A A1189 54.388 104.417 135.510 1.00 51.35 O
TER
ATOM 1 O3' G B 6 51.709 90.720 134.144 1.00 43.59 O
ATOM 2 P G B 7 52.196 90.046 135.509 1.00 44.30 P
ATOM 3 OP1 G B 7 51.725 88.645 135.584 1.00 44.72 O
ATOM 4 OP2 G B 7 51.699 90.815 136.671 1.00 43.65 O
ATOM 5 O5' G B 7 53.789 90.150 135.387 1.00 39.95 O
ATOM 6 C5' G B 7 54.570 89.157 134.687 1.00 37.03 C
ATOM 7 C4' G B 7 56.040 89.585 134.621 1.00 37.70 C
ATOM 8 O4' G B 7 56.186 90.830 133.900 1.00 36.54 O
ATOM 9 C3' G B 7 56.618 89.835 136.013 1.00 37.21 C
ATOM 10 O3' G B 7 57.051 88.606 136.642 1.00 36.35 O
ATOM 11 C2' G B 7 57.811 90.713 135.649 1.00 34.97 C
ATOM 12 O2' G B 7 58.915 89.958 135.156 1.00 35.30 O
ATOM 13 C1' G B 7 57.232 91.601 134.545 1.00 34.71 C
ATOM 14 N9 G B 7 56.697 92.872 135.080 1.00 32.72 N
ATOM 15 C8 G B 7 55.391 93.293 135.194 1.00 30.97 C
ATOM 16 N7 G B 7 55.255 94.442 135.744 1.00 30.00 N
ATOM 17 C5 G B 7 56.531 94.849 136.019 1.00 29.55 C
ATOM 18 C6 G B 7 57.015 96.067 136.644 1.00 29.13 C
ATOM 19 O6 G B 7 56.383 97.023 137.080 1.00 28.71 O
ATOM 20 N1 G B 7 58.409 96.059 136.727 1.00 30.31 N
ATOM 21 C2 G B 7 59.223 95.056 136.281 1.00 29.96 C
ATOM 22 N2 G B 7 60.566 95.212 136.437 1.00 32.13 N
ATOM 23 N3 G B 7 58.784 93.963 135.719 1.00 30.48 N
ATOM 24 C4 G B 7 57.434 93.890 135.606 1.00 28.75 C
ATOM 25 H5'1 G B 7 54.181 89.075 133.687 1.00 0.00 H
ATOM 26 H5'2 G B 7 54.488 88.232 135.229 1.00 0.00 H
ATOM 27 H4' G B 7 56.617 88.840 134.100 1.00 0.00 H
ATOM 28 H3' G B 7 55.934 90.368 136.650 1.00 0.00 H
ATOM 29 H1' G B 7 58.004 91.884 133.857 1.00 0.00 H
ATOM 30 H2' G B 7 58.176 91.272 136.488 1.00 0.00 H
ATOM 31 HO'2 G B 7 58.620 89.405 134.429 1.00 0.00 H
ATOM 32 H8 G B 7 54.580 92.688 134.844 1.00 0.00 H
ATOM 33 H1 G B 7 58.818 96.864 137.151 1.00 0.00 H
ATOM 34 H21 G B 7 61.186 94.500 136.122 1.00 0.00 H
ATOM 35 H22 G B 7 60.924 96.036 136.864 1.00 0.00 H
ATOM 36 P U B 8 57.043 88.416 138.234 1.00 34.47 P
ATOM 37 OP1 U B 8 57.546 87.070 138.591 1.00 39.78 O
ATOM 38 OP2 U B 8 55.684 88.615 138.782 1.00 31.97 O
ATOM 39 O5' U B 8 58.016 89.576 138.758 1.00 31.99 O
TER
Atoms:
OP1: (52.520,105.620,140.190)
OP2: (50.612,104.713,138.998)
O5': (52.618,103.197,139.353)
C3': (54.413,101.783,137.580)
C1': (53.965,99.597,138.416)
C5': (53.988,102.994,139.766)
H2': (54.262,100.032,136.290)
O2: (53.403,97.211,137.079)
H3': (53.416,102.064,137.295)
O4': (53.937,100.536,139.527)
C2: (52.434,97.898,137.398)
C6: (51.456,99.889,138.357)
C5: (50.206,99.472,138.064)
C4: (50.112,98.187,137.408)
HO'2: (56.467,100.523,136.516)
P: (51.725,104.400,139.921)
C4': (54.587,101.750,139.096)
H5'1: (53.996,102.862,140.834)
H5'2: (54.548,103.862,139.465)
O2': (56.051,100.010,137.214)
N1: (52.588,99.134,138.066)
N3: (51.161,97.479,137.107)
N4: (48.893,97.674,137.080)
H1': (54.523,98.723,138.686)
H4': (55.629,101.664,139.355)
H6: (51.605,100.837,138.834)
H5: (49.368,100.090,138.321)
H42: (48.835,96.789,136.628)
H41: (48.066,98.185,137.293)
O3': (55.381,102.670,136.971)
C2': (54.660,100.314,137.249)
OP2: (50.612,104.713,138.998)
O5': (52.618,103.197,139.353)
C3': (54.413,101.783,137.580)
C1': (53.965,99.597,138.416)
C5': (53.988,102.994,139.766)
H2': (54.262,100.032,136.290)
O2: (53.403,97.211,137.079)
H3': (53.416,102.064,137.295)
O4': (53.937,100.536,139.527)
C2: (52.434,97.898,137.398)
C6: (51.456,99.889,138.357)
C5: (50.206,99.472,138.064)
C4: (50.112,98.187,137.408)
HO'2: (56.467,100.523,136.516)
P: (51.725,104.400,139.921)
C4': (54.587,101.750,139.096)
H5'1: (53.996,102.862,140.834)
H5'2: (54.548,103.862,139.465)
O2': (56.051,100.010,137.214)
N1: (52.588,99.134,138.066)
N3: (51.161,97.479,137.107)
N4: (48.893,97.674,137.080)
H1': (54.523,98.723,138.686)
H4': (55.629,101.664,139.355)
H6: (51.605,100.837,138.834)
H5: (49.368,100.090,138.321)
H42: (48.835,96.789,136.628)
H41: (48.066,98.185,137.293)
O3': (55.381,102.670,136.971)
C2': (54.660,100.314,137.249)
OP1: (51.725,88.645,135.584)
OP2: (51.699,90.815,136.671)
C3': (56.618,89.835,136.013)
H21: (61.186,94.500,136.122)
H22: (60.924,96.036,136.864)
C5': (54.570,89.157,134.687)
O6: (56.383,97.023,137.080)
H2': (58.176,91.272,136.488)
H3': (55.934,90.368,136.650)
O4': (56.186,90.830,133.900)
C8: (55.391,93.293,135.194)
C2: (59.223,95.056,136.281)
N7: (55.255,94.442,135.744)
C6: (57.015,96.067,136.644)
C5: (56.531,94.849,136.019)
C4: (57.434,93.890,135.606)
C1': (57.232,91.601,134.545)
HO'2: (58.620,89.405,134.429)
N9: (56.697,92.872,135.080)
C4': (56.040,89.585,134.621)
C2': (57.811,90.713,135.649)
H5'2: (54.488,88.232,135.229)
O2': (58.915,89.958,135.156)
N1: (58.409,96.059,136.727)
N2: (60.566,95.212,136.437)
N3: (58.784,93.963,135.719)
H1': (58.004,91.884,133.857)
H4': (56.617,88.840,134.100)
H8: (54.580,92.688,134.844)
P: (52.196,90.046,135.509)
H1: (58.818,96.864,137.151)
O5': (53.789,90.150,135.387)
O3': (57.051,88.606,136.642)
H5'1: (54.181,89.075,133.687)
OP2: (51.699,90.815,136.671)
C3': (56.618,89.835,136.013)
H21: (61.186,94.500,136.122)
H22: (60.924,96.036,136.864)
C5': (54.570,89.157,134.687)
O6: (56.383,97.023,137.080)
H2': (58.176,91.272,136.488)
H3': (55.934,90.368,136.650)
O4': (56.186,90.830,133.900)
C8: (55.391,93.293,135.194)
C2: (59.223,95.056,136.281)
N7: (55.255,94.442,135.744)
C6: (57.015,96.067,136.644)
C5: (56.531,94.849,136.019)
C4: (57.434,93.890,135.606)
C1': (57.232,91.601,134.545)
HO'2: (58.620,89.405,134.429)
N9: (56.697,92.872,135.080)
C4': (56.040,89.585,134.621)
C2': (57.811,90.713,135.649)
H5'2: (54.488,88.232,135.229)
O2': (58.915,89.958,135.156)
N1: (58.409,96.059,136.727)
N2: (60.566,95.212,136.437)
N3: (58.784,93.963,135.719)
H1': (58.004,91.884,133.857)
H4': (56.617,88.840,134.100)
H8: (54.580,92.688,134.844)
P: (52.196,90.046,135.509)
H1: (58.818,96.864,137.151)
O5': (53.789,90.150,135.387)
O3': (57.051,88.606,136.642)
H5'1: (54.181,89.075,133.687)
Image (generated by PyMOL):