Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D0U:A21:A63
Extra
PDB:
ATOM 1 O3' U A 20 0.662 17.656 6.387 1.00 42.20 O
ATOM 2 P G A 21 -0.411 17.458 5.214 1.00 45.82 P
ATOM 3 OP1 G A 21 -1.744 17.491 5.858 1.00 42.35 O
ATOM 4 OP2 G A 21 -0.013 16.288 4.400 1.00 46.66 O
ATOM 5 O5' G A 21 -0.194 18.723 4.258 1.00 42.70 O
ATOM 6 C5' G A 21 -0.197 20.043 4.767 1.00 43.00 C
ATOM 7 C4' G A 21 0.224 20.989 3.664 1.00 43.16 C
ATOM 8 O4' G A 21 1.596 20.726 3.291 1.00 41.27 O
ATOM 9 C3' G A 21 -0.545 20.817 2.369 1.00 44.71 C
ATOM 10 O3' G A 21 -1.752 21.556 2.457 1.00 47.38 O
ATOM 11 C2' G A 21 0.430 21.437 1.378 1.00 43.35 C
ATOM 12 O2' G A 21 0.420 22.847 1.445 1.00 45.90 O
ATOM 13 C1' G A 21 1.766 20.930 1.902 1.00 40.59 C
ATOM 14 N9 G A 21 2.187 19.669 1.302 1.00 40.11 N
ATOM 15 C8 G A 21 1.788 18.412 1.684 1.00 40.97 C
ATOM 16 N7 G A 21 2.322 17.463 0.968 1.00 40.41 N
ATOM 17 C5 G A 21 3.131 18.131 0.058 1.00 38.25 C
ATOM 18 C6 G A 21 3.955 17.618 -0.969 1.00 39.11 C
ATOM 19 O6 G A 21 4.154 16.435 -1.293 1.00 39.55 O
ATOM 20 N1 G A 21 4.598 18.633 -1.662 1.00 37.16 N
ATOM 21 C2 G A 21 4.463 19.966 -1.392 1.00 36.39 C
ATOM 22 N2 G A 21 5.175 20.779 -2.181 1.00 39.05 N
ATOM 23 N3 G A 21 3.694 20.464 -0.433 1.00 35.41 N
ATOM 24 C4 G A 21 3.060 19.489 0.251 1.00 37.53 C
ATOM 25 P A A 22 -3.077 21.072 1.708 1.00 45.49 P
ATOM 26 OP1 A A 22 -2.845 21.273 0.257 1.00 44.07 O
ATOM 27 OP2 A A 22 -4.232 21.696 2.398 1.00 45.55 O
ATOM 28 O5' A A 22 -3.106 19.503 2.001 1.00 46.23 O
TER
ATOM 1 O3' A B 62 8.000 21.609 -7.001 1.00 47.77 O
ATOM 2 P A B 63 8.984 21.942 -5.788 1.00 53.02 P
ATOM 3 OP1 A B 63 10.319 22.044 -6.432 1.00 50.15 O
ATOM 4 OP2 A B 63 8.735 21.004 -4.661 1.00 46.00 O
ATOM 5 O5' A B 63 8.508 23.389 -5.291 1.00 46.38 O
ATOM 6 C5' A B 63 8.810 24.516 -6.097 1.00 45.37 C
ATOM 7 C4' A B 63 8.265 25.782 -5.474 1.00 42.80 C
ATOM 8 O4' A B 63 6.824 25.690 -5.385 1.00 41.49 O
ATOM 9 C3' A B 63 8.695 26.036 -4.041 1.00 42.56 C
ATOM 10 O3' A B 63 10.007 26.598 -3.992 1.00 40.69 O
ATOM 11 C2' A B 63 7.628 27.045 -3.631 1.00 42.72 C
ATOM 12 O2' A B 63 7.870 28.317 -4.196 1.00 42.58 O
ATOM 13 C1' A B 63 6.381 26.443 -4.271 1.00 40.41 C
ATOM 14 N9 A B 63 5.644 25.549 -3.392 1.00 38.28 N
ATOM 15 C8 A B 63 5.820 24.203 -3.275 1.00 40.96 C
ATOM 16 N7 A B 63 5.014 23.642 -2.404 1.00 39.86 N
ATOM 17 C5 A B 63 4.258 24.690 -1.921 1.00 37.02 C
ATOM 18 C6 A B 63 3.223 24.747 -0.970 1.00 39.25 C
ATOM 19 N6 A B 63 2.762 23.674 -0.314 1.00 37.08 N
ATOM 20 N1 A B 63 2.677 25.955 -0.722 1.00 40.25 N
ATOM 21 C2 A B 63 3.148 27.016 -1.382 1.00 38.32 C
ATOM 22 N3 A B 63 4.115 27.082 -2.296 1.00 38.75 N
ATOM 23 C4 A B 63 4.634 25.872 -2.521 1.00 37.33 C
ATOM 24 P G B 64 10.833 26.551 -2.619 1.00 45.94 P
ATOM 25 OP1 G B 64 12.231 26.949 -2.919 1.00 39.78 O
ATOM 26 OP2 G B 64 10.560 25.278 -1.911 1.00 42.33 O
ATOM 27 O5' G B 64 10.108 27.669 -1.749 1.00 38.40 O
TER
ATOM 2 P G A 21 -0.411 17.458 5.214 1.00 45.82 P
ATOM 3 OP1 G A 21 -1.744 17.491 5.858 1.00 42.35 O
ATOM 4 OP2 G A 21 -0.013 16.288 4.400 1.00 46.66 O
ATOM 5 O5' G A 21 -0.194 18.723 4.258 1.00 42.70 O
ATOM 6 C5' G A 21 -0.197 20.043 4.767 1.00 43.00 C
ATOM 7 C4' G A 21 0.224 20.989 3.664 1.00 43.16 C
ATOM 8 O4' G A 21 1.596 20.726 3.291 1.00 41.27 O
ATOM 9 C3' G A 21 -0.545 20.817 2.369 1.00 44.71 C
ATOM 10 O3' G A 21 -1.752 21.556 2.457 1.00 47.38 O
ATOM 11 C2' G A 21 0.430 21.437 1.378 1.00 43.35 C
ATOM 12 O2' G A 21 0.420 22.847 1.445 1.00 45.90 O
ATOM 13 C1' G A 21 1.766 20.930 1.902 1.00 40.59 C
ATOM 14 N9 G A 21 2.187 19.669 1.302 1.00 40.11 N
ATOM 15 C8 G A 21 1.788 18.412 1.684 1.00 40.97 C
ATOM 16 N7 G A 21 2.322 17.463 0.968 1.00 40.41 N
ATOM 17 C5 G A 21 3.131 18.131 0.058 1.00 38.25 C
ATOM 18 C6 G A 21 3.955 17.618 -0.969 1.00 39.11 C
ATOM 19 O6 G A 21 4.154 16.435 -1.293 1.00 39.55 O
ATOM 20 N1 G A 21 4.598 18.633 -1.662 1.00 37.16 N
ATOM 21 C2 G A 21 4.463 19.966 -1.392 1.00 36.39 C
ATOM 22 N2 G A 21 5.175 20.779 -2.181 1.00 39.05 N
ATOM 23 N3 G A 21 3.694 20.464 -0.433 1.00 35.41 N
ATOM 24 C4 G A 21 3.060 19.489 0.251 1.00 37.53 C
ATOM 25 P A A 22 -3.077 21.072 1.708 1.00 45.49 P
ATOM 26 OP1 A A 22 -2.845 21.273 0.257 1.00 44.07 O
ATOM 27 OP2 A A 22 -4.232 21.696 2.398 1.00 45.55 O
ATOM 28 O5' A A 22 -3.106 19.503 2.001 1.00 46.23 O
TER
ATOM 1 O3' A B 62 8.000 21.609 -7.001 1.00 47.77 O
ATOM 2 P A B 63 8.984 21.942 -5.788 1.00 53.02 P
ATOM 3 OP1 A B 63 10.319 22.044 -6.432 1.00 50.15 O
ATOM 4 OP2 A B 63 8.735 21.004 -4.661 1.00 46.00 O
ATOM 5 O5' A B 63 8.508 23.389 -5.291 1.00 46.38 O
ATOM 6 C5' A B 63 8.810 24.516 -6.097 1.00 45.37 C
ATOM 7 C4' A B 63 8.265 25.782 -5.474 1.00 42.80 C
ATOM 8 O4' A B 63 6.824 25.690 -5.385 1.00 41.49 O
ATOM 9 C3' A B 63 8.695 26.036 -4.041 1.00 42.56 C
ATOM 10 O3' A B 63 10.007 26.598 -3.992 1.00 40.69 O
ATOM 11 C2' A B 63 7.628 27.045 -3.631 1.00 42.72 C
ATOM 12 O2' A B 63 7.870 28.317 -4.196 1.00 42.58 O
ATOM 13 C1' A B 63 6.381 26.443 -4.271 1.00 40.41 C
ATOM 14 N9 A B 63 5.644 25.549 -3.392 1.00 38.28 N
ATOM 15 C8 A B 63 5.820 24.203 -3.275 1.00 40.96 C
ATOM 16 N7 A B 63 5.014 23.642 -2.404 1.00 39.86 N
ATOM 17 C5 A B 63 4.258 24.690 -1.921 1.00 37.02 C
ATOM 18 C6 A B 63 3.223 24.747 -0.970 1.00 39.25 C
ATOM 19 N6 A B 63 2.762 23.674 -0.314 1.00 37.08 N
ATOM 20 N1 A B 63 2.677 25.955 -0.722 1.00 40.25 N
ATOM 21 C2 A B 63 3.148 27.016 -1.382 1.00 38.32 C
ATOM 22 N3 A B 63 4.115 27.082 -2.296 1.00 38.75 N
ATOM 23 C4 A B 63 4.634 25.872 -2.521 1.00 37.33 C
ATOM 24 P G B 64 10.833 26.551 -2.619 1.00 45.94 P
ATOM 25 OP1 G B 64 12.231 26.949 -2.919 1.00 39.78 O
ATOM 26 OP2 G B 64 10.560 25.278 -1.911 1.00 42.33 O
ATOM 27 O5' G B 64 10.108 27.669 -1.749 1.00 38.40 O
TER
Atoms:
OP1: (-1.744,17.491,5.858)
OP2: (-0.013,16.288,4.400)
C3': (-0.545,20.817,2.369)
C1': (1.766,20.930,1.902)
C5': (-0.197,20.043,4.767)
O6: (4.154,16.435,-1.293)
O4': (1.596,20.726,3.291)
C8: (1.788,18.412,1.684)
C2: (4.463,19.966,-1.392)
C6: (3.955,17.618,-0.969)
C5: (3.131,18.131,0.058)
C4: (3.060,19.489,0.251)
P: (-0.411,17.458,5.214)
C4': (0.224,20.989,3.664)
C2': (0.430,21.437,1.378)
O2': (0.420,22.847,1.445)
N1: (4.598,18.633,-1.662)
N2: (5.175,20.779,-2.181)
N3: (3.694,20.464,-0.433)
N7: (2.322,17.463,0.968)
N9: (2.187,19.669,1.302)
O5': (-0.194,18.723,4.258)
O3': (-1.752,21.556,2.457)
OP2: (-0.013,16.288,4.400)
C3': (-0.545,20.817,2.369)
C1': (1.766,20.930,1.902)
C5': (-0.197,20.043,4.767)
O6: (4.154,16.435,-1.293)
O4': (1.596,20.726,3.291)
C8: (1.788,18.412,1.684)
C2: (4.463,19.966,-1.392)
C6: (3.955,17.618,-0.969)
C5: (3.131,18.131,0.058)
C4: (3.060,19.489,0.251)
P: (-0.411,17.458,5.214)
C4': (0.224,20.989,3.664)
C2': (0.430,21.437,1.378)
O2': (0.420,22.847,1.445)
N1: (4.598,18.633,-1.662)
N2: (5.175,20.779,-2.181)
N3: (3.694,20.464,-0.433)
N7: (2.322,17.463,0.968)
N9: (2.187,19.669,1.302)
O5': (-0.194,18.723,4.258)
O3': (-1.752,21.556,2.457)
OP1: (10.319,22.044,-6.432)
OP2: (8.735,21.004,-4.661)
C3': (8.695,26.036,-4.041)
C1': (6.381,26.443,-4.271)
C5': (8.810,24.516,-6.097)
O4': (6.824,25.690,-5.385)
C8: (5.820,24.203,-3.275)
O2': (7.870,28.317,-4.196)
C6: (3.223,24.747,-0.970)
C5: (4.258,24.690,-1.921)
C4: (4.634,25.872,-2.521)
P: (8.984,21.942,-5.788)
C4': (8.265,25.782,-5.474)
C2': (7.628,27.045,-3.631)
C2: (3.148,27.016,-1.382)
N1: (2.677,25.955,-0.722)
N3: (4.115,27.082,-2.296)
N6: (2.762,23.674,-0.314)
N7: (5.014,23.642,-2.404)
N9: (5.644,25.549,-3.392)
O5': (8.508,23.389,-5.291)
O3': (10.007,26.598,-3.992)
OP2: (8.735,21.004,-4.661)
C3': (8.695,26.036,-4.041)
C1': (6.381,26.443,-4.271)
C5': (8.810,24.516,-6.097)
O4': (6.824,25.690,-5.385)
C8: (5.820,24.203,-3.275)
O2': (7.870,28.317,-4.196)
C6: (3.223,24.747,-0.970)
C5: (4.258,24.690,-1.921)
C4: (4.634,25.872,-2.521)
P: (8.984,21.942,-5.788)
C4': (8.265,25.782,-5.474)
C2': (7.628,27.045,-3.631)
C2: (3.148,27.016,-1.382)
N1: (2.677,25.955,-0.722)
N3: (4.115,27.082,-2.296)
N6: (2.762,23.674,-0.314)
N7: (5.014,23.642,-2.404)
N9: (5.644,25.549,-3.392)
O5': (8.508,23.389,-5.291)
O3': (10.007,26.598,-3.992)
Image (generated by PyMOL):