ClaRNA

Doublet info:

Details

Nucleotide types: GA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1M90:A556:A578

Extra

PDB:
ATOM 1 O3' U A 555 3.911 92.633 107.558 1.00 43.02 O
ATOM 2 P G A 556 3.395 91.915 108.903 1.00 42.90 P
ATOM 3 OP1 G A 556 4.411 92.164 109.965 1.00 42.91 O
ATOM 4 OP2 G A 556 3.044 90.514 108.550 1.00 38.99 O
ATOM 5 O5' G A 556 2.078 92.739 109.273 1.00 41.42 O
ATOM 6 C5' G A 556 2.152 94.121 109.689 1.00 41.97 C
ATOM 7 C4' G A 556 0.762 94.667 109.939 1.00 46.81 C
ATOM 8 O4' G A 556 0.060 94.835 108.674 1.00 47.54 O
ATOM 9 C3' G A 556 -0.163 93.767 110.748 1.00 47.72 C
ATOM 10 O3' G A 556 0.065 93.819 112.149 1.00 47.56 O
ATOM 11 C2' G A 556 -1.541 94.267 110.337 1.00 47.19 C
ATOM 12 O2' G A 556 -1.917 95.470 110.981 1.00 46.36 O
ATOM 13 C1' G A 556 -1.318 94.524 108.847 1.00 46.31 C
ATOM 14 N9 G A 556 -1.622 93.349 108.038 1.00 45.56 N
ATOM 15 C8 G A 556 -0.754 92.350 107.661 1.00 45.25 C
ATOM 16 N7 G A 556 -1.315 91.438 106.914 1.00 45.13 N
ATOM 17 C5 G A 556 -2.633 91.857 106.795 1.00 45.78 C
ATOM 18 C6 G A 556 -3.719 91.277 106.098 1.00 46.16 C
ATOM 19 O6 G A 556 -3.729 90.254 105.403 1.00 48.28 O
ATOM 20 N1 G A 556 -4.885 92.019 106.256 1.00 44.36 N
ATOM 21 C2 G A 556 -4.989 93.179 106.980 1.00 45.29 C
ATOM 22 N2 G A 556 -6.196 93.756 107.002 1.00 46.34 N
ATOM 23 N3 G A 556 -3.983 93.737 107.631 1.00 45.83 N
ATOM 24 C4 G A 556 -2.841 93.028 107.494 1.00 46.28 C
ATOM 25 P A A 557 -0.448 92.612 113.072 1.00 48.80 P
ATOM 26 OP1 A A 557 0.217 92.756 114.387 1.00 50.11 O
ATOM 27 OP2 A A 557 -0.322 91.333 112.329 1.00 46.59 O
ATOM 28 O5' A A 557 -1.998 92.934 113.241 1.00 50.31 O
TER

ATOM 1 O3' U B 577 -12.144 93.735 106.599 1.00 66.41 O
ATOM 2 P A B 578 -11.753 95.119 105.878 1.00 67.92 P
ATOM 3 OP1 A B 578 -12.939 95.663 105.175 1.00 68.08 O
ATOM 4 OP2 A B 578 -10.488 94.908 105.123 1.00 70.12 O
ATOM 5 O5' A B 578 -11.435 96.088 107.093 1.00 64.40 O
ATOM 6 C5' A B 578 -12.490 96.655 107.855 1.00 62.01 C
ATOM 7 C4' A B 578 -11.942 97.687 108.791 1.00 61.16 C
ATOM 8 O4' A B 578 -11.122 97.035 109.794 1.00 59.85 O
ATOM 9 C3' A B 578 -10.996 98.687 108.160 1.00 61.67 C
ATOM 10 O3' A B 578 -11.655 99.722 107.443 1.00 64.14 O
ATOM 11 C2' A B 578 -10.238 99.191 109.374 1.00 61.57 C
ATOM 12 O2' A B 578 -11.011 100.095 110.140 1.00 61.12 O
ATOM 13 C1' A B 578 -10.036 97.883 110.142 1.00 59.62 C
ATOM 14 N9 A B 578 -8.786 97.198 109.790 1.00 57.99 N
ATOM 15 C8 A B 578 -8.627 96.070 109.013 1.00 56.48 C
ATOM 16 N7 A B 578 -7.384 95.673 108.906 1.00 55.19 N
ATOM 17 C5 A B 578 -6.672 96.600 109.655 1.00 54.63 C
ATOM 18 C6 A B 578 -5.307 96.719 109.950 1.00 54.09 C
ATOM 19 N6 A B 578 -4.380 95.858 109.514 1.00 52.24 N
ATOM 20 N1 A B 578 -4.920 97.759 110.721 1.00 53.71 N
ATOM 21 C2 A B 578 -5.856 98.614 111.164 1.00 53.51 C
ATOM 22 N3 A B 578 -7.169 98.602 110.962 1.00 52.94 N
ATOM 23 C4 A B 578 -7.519 97.555 110.192 1.00 55.40 C
ATOM 24 P A B 579 -11.095 100.162 105.996 1.00 66.56 P
ATOM 25 OP1 A B 579 -11.797 101.421 105.629 1.00 65.66 O
ATOM 26 OP2 A B 579 -11.179 98.977 105.081 1.00 64.12 O
ATOM 27 O5' A B 579 -9.555 100.511 106.267 1.00 65.38 O
TER

Atoms:
OP1: (4.411,92.164,109.965)
OP2: (3.044,90.514,108.550)
C3': (-0.163,93.767,110.748)
C1': (-1.318,94.524,108.847)
C5': (2.152,94.121,109.689)
O6: (-3.729,90.254,105.403)
O4': (0.060,94.835,108.674)
C8: (-0.754,92.350,107.661)
C2: (-4.989,93.179,106.980)
C6: (-3.719,91.277,106.098)
C5: (-2.633,91.857,106.795)
C4: (-2.841,93.028,107.494)
P: (3.395,91.915,108.903)
C4': (0.762,94.667,109.939)
C2': (-1.541,94.267,110.337)
O2': (-1.917,95.470,110.981)
N1: (-4.885,92.019,106.256)
N2: (-6.196,93.756,107.002)
N3: (-3.983,93.737,107.631)
N7: (-1.315,91.438,106.914)
N9: (-1.622,93.349,108.038)
O5': (2.078,92.739,109.273)
O3': (0.065,93.819,112.149)
OP1: (-12.939,95.663,105.175)
OP2: (-10.488,94.908,105.123)
C3': (-10.996,98.687,108.160)
C1': (-10.036,97.883,110.142)
C5': (-12.490,96.655,107.855)
O4': (-11.122,97.035,109.794)
C8: (-8.627,96.070,109.013)
O2': (-11.011,100.095,110.140)
C6: (-5.307,96.719,109.950)
C5: (-6.672,96.600,109.655)
C4: (-7.519,97.555,110.192)
P: (-11.753,95.119,105.878)
C4': (-11.942,97.687,108.791)
C2': (-10.238,99.191,109.374)
C2: (-5.856,98.614,111.164)
N1: (-4.920,97.759,110.721)
N3: (-7.169,98.602,110.962)
N6: (-4.380,95.858,109.514)
N7: (-7.384,95.673,108.906)
N9: (-8.786,97.198,109.790)
O5': (-11.435,96.088,107.093)
O3': (-11.655,99.722,107.443)
Image (generated by PyMOL):
PyMOL image
show in jmol