Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0257:0230
Extra
PDB:
ATOM 1 O3' U A 256 80.573 108.508 -4.187 1.00 67.98 O
ATOM 2 P G A 257 79.287 108.127 -3.308 1.00 69.24 P
ATOM 3 OP1 G A 257 78.421 107.234 -4.131 1.00 68.77 O
ATOM 4 OP2 G A 257 78.727 109.395 -2.766 1.00 69.81 O
ATOM 5 O5' G A 257 79.892 107.294 -2.093 1.00 66.88 O
ATOM 6 C5' G A 257 80.722 106.144 -2.323 1.00 66.22 C
ATOM 7 C4' G A 257 81.413 105.748 -1.042 1.00 66.71 C
ATOM 8 O4' G A 257 82.438 106.722 -0.708 1.00 65.20 O
ATOM 9 C3' G A 257 80.503 105.714 0.175 1.00 66.33 C
ATOM 10 O3' G A 257 79.786 104.489 0.255 1.00 69.73 O
ATOM 11 C2' G A 257 81.485 105.930 1.317 1.00 64.06 C
ATOM 12 O2' G A 257 82.211 104.755 1.621 1.00 62.47 O
ATOM 13 C1' G A 257 82.432 106.963 0.695 1.00 61.69 C
ATOM 14 N9 G A 257 82.033 108.358 0.908 1.00 56.46 N
ATOM 15 C8 G A 257 80.916 108.986 0.406 1.00 54.16 C
ATOM 16 N7 G A 257 80.841 110.245 0.744 1.00 52.19 N
ATOM 17 C5 G A 257 81.970 110.462 1.521 1.00 50.97 C
ATOM 18 C6 G A 257 82.429 111.640 2.167 1.00 49.58 C
ATOM 19 O6 G A 257 81.917 112.766 2.175 1.00 48.22 O
ATOM 20 N1 G A 257 83.615 111.415 2.850 1.00 48.40 N
ATOM 21 C2 G A 257 84.280 110.218 2.902 1.00 50.35 C
ATOM 22 N2 G A 257 85.413 110.198 3.616 1.00 52.16 N
ATOM 23 N3 G A 257 83.869 109.117 2.302 1.00 51.04 N
ATOM 24 C4 G A 257 82.715 109.308 1.636 1.00 52.27 C
ATOM 25 P U A 258 78.246 104.493 0.724 1.00 71.50 P
ATOM 26 OP1 U A 258 77.574 103.333 0.079 1.00 72.26 O
ATOM 27 OP2 U A 258 77.694 105.865 0.522 1.00 71.26 O
ATOM 28 O5' U A 258 78.346 104.208 2.290 1.00 72.01 O
TER
ATOM 1 O3' A B 229 89.927 111.827 7.163 1.00 59.08 O
ATOM 2 P A B 230 90.400 111.855 5.630 1.00 60.26 P
ATOM 3 OP1 A B 230 91.632 112.682 5.576 1.00 58.16 O
ATOM 4 OP2 A B 230 89.224 112.228 4.796 1.00 59.75 O
ATOM 5 O5' A B 230 90.768 110.334 5.324 1.00 59.00 O
ATOM 6 C5' A B 230 91.856 109.682 6.013 1.00 59.95 C
ATOM 7 C4' A B 230 91.819 108.187 5.767 1.00 61.17 C
ATOM 8 O4' A B 230 90.565 107.657 6.260 1.00 60.86 O
ATOM 9 C3' A B 230 91.849 107.725 4.318 1.00 62.63 C
ATOM 10 O3' A B 230 93.172 107.713 3.787 1.00 66.26 O
ATOM 11 C2' A B 230 91.256 106.328 4.423 1.00 60.62 C
ATOM 12 O2' A B 230 92.168 105.383 4.948 1.00 60.61 O
ATOM 13 C1' A B 230 90.163 106.556 5.461 1.00 58.76 C
ATOM 14 N9 A B 230 88.847 106.851 4.894 1.00 56.59 N
ATOM 15 C8 A B 230 88.282 108.074 4.611 1.00 56.28 C
ATOM 16 N7 A B 230 87.053 107.997 4.153 1.00 54.17 N
ATOM 17 C5 A B 230 86.797 106.634 4.117 1.00 54.27 C
ATOM 18 C6 A B 230 85.665 105.893 3.726 1.00 52.85 C
ATOM 19 N6 A B 230 84.545 106.442 3.259 1.00 52.03 N
ATOM 20 N1 A B 230 85.731 104.547 3.826 1.00 52.55 N
ATOM 21 C2 A B 230 86.868 103.990 4.279 1.00 54.85 C
ATOM 22 N3 A B 230 88.002 104.578 4.667 1.00 54.50 N
ATOM 23 C4 A B 230 87.898 105.915 4.563 1.00 55.55 C
ATOM 24 P A B 231 93.423 108.130 2.250 1.00 69.50 P
ATOM 25 OP1 A B 231 94.877 108.424 2.152 1.00 69.58 O
ATOM 26 OP2 A B 231 92.429 109.163 1.810 1.00 66.91 O
ATOM 27 O5' A B 231 93.113 106.793 1.441 1.00 68.58 O
TER
ATOM 2 P G A 257 79.287 108.127 -3.308 1.00 69.24 P
ATOM 3 OP1 G A 257 78.421 107.234 -4.131 1.00 68.77 O
ATOM 4 OP2 G A 257 78.727 109.395 -2.766 1.00 69.81 O
ATOM 5 O5' G A 257 79.892 107.294 -2.093 1.00 66.88 O
ATOM 6 C5' G A 257 80.722 106.144 -2.323 1.00 66.22 C
ATOM 7 C4' G A 257 81.413 105.748 -1.042 1.00 66.71 C
ATOM 8 O4' G A 257 82.438 106.722 -0.708 1.00 65.20 O
ATOM 9 C3' G A 257 80.503 105.714 0.175 1.00 66.33 C
ATOM 10 O3' G A 257 79.786 104.489 0.255 1.00 69.73 O
ATOM 11 C2' G A 257 81.485 105.930 1.317 1.00 64.06 C
ATOM 12 O2' G A 257 82.211 104.755 1.621 1.00 62.47 O
ATOM 13 C1' G A 257 82.432 106.963 0.695 1.00 61.69 C
ATOM 14 N9 G A 257 82.033 108.358 0.908 1.00 56.46 N
ATOM 15 C8 G A 257 80.916 108.986 0.406 1.00 54.16 C
ATOM 16 N7 G A 257 80.841 110.245 0.744 1.00 52.19 N
ATOM 17 C5 G A 257 81.970 110.462 1.521 1.00 50.97 C
ATOM 18 C6 G A 257 82.429 111.640 2.167 1.00 49.58 C
ATOM 19 O6 G A 257 81.917 112.766 2.175 1.00 48.22 O
ATOM 20 N1 G A 257 83.615 111.415 2.850 1.00 48.40 N
ATOM 21 C2 G A 257 84.280 110.218 2.902 1.00 50.35 C
ATOM 22 N2 G A 257 85.413 110.198 3.616 1.00 52.16 N
ATOM 23 N3 G A 257 83.869 109.117 2.302 1.00 51.04 N
ATOM 24 C4 G A 257 82.715 109.308 1.636 1.00 52.27 C
ATOM 25 P U A 258 78.246 104.493 0.724 1.00 71.50 P
ATOM 26 OP1 U A 258 77.574 103.333 0.079 1.00 72.26 O
ATOM 27 OP2 U A 258 77.694 105.865 0.522 1.00 71.26 O
ATOM 28 O5' U A 258 78.346 104.208 2.290 1.00 72.01 O
TER
ATOM 1 O3' A B 229 89.927 111.827 7.163 1.00 59.08 O
ATOM 2 P A B 230 90.400 111.855 5.630 1.00 60.26 P
ATOM 3 OP1 A B 230 91.632 112.682 5.576 1.00 58.16 O
ATOM 4 OP2 A B 230 89.224 112.228 4.796 1.00 59.75 O
ATOM 5 O5' A B 230 90.768 110.334 5.324 1.00 59.00 O
ATOM 6 C5' A B 230 91.856 109.682 6.013 1.00 59.95 C
ATOM 7 C4' A B 230 91.819 108.187 5.767 1.00 61.17 C
ATOM 8 O4' A B 230 90.565 107.657 6.260 1.00 60.86 O
ATOM 9 C3' A B 230 91.849 107.725 4.318 1.00 62.63 C
ATOM 10 O3' A B 230 93.172 107.713 3.787 1.00 66.26 O
ATOM 11 C2' A B 230 91.256 106.328 4.423 1.00 60.62 C
ATOM 12 O2' A B 230 92.168 105.383 4.948 1.00 60.61 O
ATOM 13 C1' A B 230 90.163 106.556 5.461 1.00 58.76 C
ATOM 14 N9 A B 230 88.847 106.851 4.894 1.00 56.59 N
ATOM 15 C8 A B 230 88.282 108.074 4.611 1.00 56.28 C
ATOM 16 N7 A B 230 87.053 107.997 4.153 1.00 54.17 N
ATOM 17 C5 A B 230 86.797 106.634 4.117 1.00 54.27 C
ATOM 18 C6 A B 230 85.665 105.893 3.726 1.00 52.85 C
ATOM 19 N6 A B 230 84.545 106.442 3.259 1.00 52.03 N
ATOM 20 N1 A B 230 85.731 104.547 3.826 1.00 52.55 N
ATOM 21 C2 A B 230 86.868 103.990 4.279 1.00 54.85 C
ATOM 22 N3 A B 230 88.002 104.578 4.667 1.00 54.50 N
ATOM 23 C4 A B 230 87.898 105.915 4.563 1.00 55.55 C
ATOM 24 P A B 231 93.423 108.130 2.250 1.00 69.50 P
ATOM 25 OP1 A B 231 94.877 108.424 2.152 1.00 69.58 O
ATOM 26 OP2 A B 231 92.429 109.163 1.810 1.00 66.91 O
ATOM 27 O5' A B 231 93.113 106.793 1.441 1.00 68.58 O
TER
Atoms:
OP1: (78.421,107.234,-4.131)
OP2: (78.727,109.395,-2.766)
C3': (80.503,105.714,0.175)
C1': (82.432,106.963,0.695)
C5': (80.722,106.144,-2.323)
O6: (81.917,112.766,2.175)
O4': (82.438,106.722,-0.708)
C8: (80.916,108.986,0.406)
C2: (84.280,110.218,2.902)
C6: (82.429,111.640,2.167)
C5: (81.970,110.462,1.521)
C4: (82.715,109.308,1.636)
P: (79.287,108.127,-3.308)
C4': (81.413,105.748,-1.042)
C2': (81.485,105.930,1.317)
O2': (82.211,104.755,1.621)
N1: (83.615,111.415,2.850)
N2: (85.413,110.198,3.616)
N3: (83.869,109.117,2.302)
N7: (80.841,110.245,0.744)
N9: (82.033,108.358,0.908)
O5': (79.892,107.294,-2.093)
O3': (79.786,104.489,0.255)
OP2: (78.727,109.395,-2.766)
C3': (80.503,105.714,0.175)
C1': (82.432,106.963,0.695)
C5': (80.722,106.144,-2.323)
O6: (81.917,112.766,2.175)
O4': (82.438,106.722,-0.708)
C8: (80.916,108.986,0.406)
C2: (84.280,110.218,2.902)
C6: (82.429,111.640,2.167)
C5: (81.970,110.462,1.521)
C4: (82.715,109.308,1.636)
P: (79.287,108.127,-3.308)
C4': (81.413,105.748,-1.042)
C2': (81.485,105.930,1.317)
O2': (82.211,104.755,1.621)
N1: (83.615,111.415,2.850)
N2: (85.413,110.198,3.616)
N3: (83.869,109.117,2.302)
N7: (80.841,110.245,0.744)
N9: (82.033,108.358,0.908)
O5': (79.892,107.294,-2.093)
O3': (79.786,104.489,0.255)
OP1: (91.632,112.682,5.576)
OP2: (89.224,112.228,4.796)
C3': (91.849,107.725,4.318)
C1': (90.163,106.556,5.461)
C5': (91.856,109.682,6.013)
O4': (90.565,107.657,6.260)
C8: (88.282,108.074,4.611)
O2': (92.168,105.383,4.948)
C6: (85.665,105.893,3.726)
C5: (86.797,106.634,4.117)
C4: (87.898,105.915,4.563)
P: (90.400,111.855,5.630)
C4': (91.819,108.187,5.767)
C2': (91.256,106.328,4.423)
C2: (86.868,103.990,4.279)
N1: (85.731,104.547,3.826)
N3: (88.002,104.578,4.667)
N6: (84.545,106.442,3.259)
N7: (87.053,107.997,4.153)
N9: (88.847,106.851,4.894)
O5': (90.768,110.334,5.324)
O3': (93.172,107.713,3.787)
OP2: (89.224,112.228,4.796)
C3': (91.849,107.725,4.318)
C1': (90.163,106.556,5.461)
C5': (91.856,109.682,6.013)
O4': (90.565,107.657,6.260)
C8: (88.282,108.074,4.611)
O2': (92.168,105.383,4.948)
C6: (85.665,105.893,3.726)
C5: (86.797,106.634,4.117)
C4: (87.898,105.915,4.563)
P: (90.400,111.855,5.630)
C4': (91.819,108.187,5.767)
C2': (91.256,106.328,4.423)
C2: (86.868,103.990,4.279)
N1: (85.731,104.547,3.826)
N3: (88.002,104.578,4.667)
N6: (84.545,106.442,3.259)
N7: (87.053,107.997,4.153)
N9: (88.847,106.851,4.894)
O5': (90.768,110.334,5.324)
O3': (93.172,107.713,3.787)
Image (generated by PyMOL):