ClaRNA

Doublet info:

Details

Nucleotide types: GA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 2VPL:B9:B37

Extra

PDB:
ATOM 1 O3' G A 8 13.272 20.263 6.510 1.00 32.99 O
ATOM 2 P G A 9 13.089 21.841 6.632 1.00 35.18 P
ATOM 3 OP1 G A 9 11.755 22.061 7.227 1.00 46.19 O
ATOM 4 OP2 G A 9 13.462 22.483 5.359 1.00 36.41 O
ATOM 5 O5' G A 9 14.210 22.248 7.697 1.00 42.74 O
ATOM 6 C5' G A 9 14.118 21.916 9.082 1.00 22.00 C
ATOM 7 C4' G A 9 15.461 22.268 9.700 1.00 31.88 C
ATOM 8 O4' G A 9 16.519 21.619 8.950 1.00 33.09 O
ATOM 9 C3' G A 9 15.847 23.735 9.631 1.00 35.33 C
ATOM 10 O3' G A 9 15.254 24.414 10.709 1.00 29.58 O
ATOM 11 C2' G A 9 17.364 23.642 9.775 1.00 29.55 C
ATOM 12 O2' G A 9 17.761 23.402 11.110 1.00 39.89 O
ATOM 13 C1' G A 9 17.688 22.419 8.931 1.00 28.54 C
ATOM 14 N9 G A 9 18.057 22.779 7.560 1.00 35.24 N
ATOM 15 C8 G A 9 17.241 22.864 6.454 1.00 18.91 C
ATOM 16 N7 G A 9 17.861 23.234 5.371 1.00 30.26 N
ATOM 17 C5 G A 9 19.175 23.406 5.782 1.00 20.19 C
ATOM 18 C6 G A 9 20.310 23.796 5.039 1.00 25.00 C
ATOM 19 O6 G A 9 20.372 24.061 3.832 1.00 28.07 O
ATOM 20 N1 G A 9 21.461 23.838 5.826 1.00 23.54 N
ATOM 21 C2 G A 9 21.504 23.547 7.168 1.00 31.11 C
ATOM 22 N2 G A 9 22.712 23.626 7.741 1.00 30.30 N
ATOM 23 N3 G A 9 20.445 23.180 7.882 1.00 31.56 N
ATOM 24 C4 G A 9 19.316 23.130 7.125 1.00 25.76 C
ATOM 25 P A A 10 14.264 25.635 10.473 1.00 36.75 P
ATOM 26 OP1 A A 10 12.879 25.123 10.386 1.00 33.11 O
ATOM 27 OP2 A A 10 14.823 26.481 9.403 1.00 33.24 O
ATOM 28 O5' A A 10 14.393 26.426 11.850 1.00 38.80 O
TER

ATOM 1 O3' A B 36 29.117 22.364 7.094 1.00 40.09 O
ATOM 2 P A B 37 28.664 21.105 7.953 1.00 37.76 P
ATOM 3 OP1 A B 37 29.857 20.236 8.065 1.00 33.12 O
ATOM 4 OP2 A B 37 27.411 20.576 7.372 1.00 46.42 O
ATOM 5 O5' A B 37 28.301 21.719 9.393 1.00 32.24 O
ATOM 6 C5' A B 37 29.321 21.842 10.385 1.00 33.94 C
ATOM 7 C4' A B 37 28.767 22.335 11.713 1.00 29.49 C
ATOM 8 O4' A B 37 27.759 23.361 11.531 1.00 19.83 O
ATOM 9 C3' A B 37 28.018 21.273 12.485 1.00 25.79 C
ATOM 10 O3' A B 37 28.899 20.440 13.223 1.00 26.55 O
ATOM 11 C2' A B 37 27.123 22.087 13.407 1.00 34.04 C
ATOM 12 O2' A B 37 27.854 22.621 14.493 1.00 29.84 O
ATOM 13 C1' A B 37 26.707 23.222 12.481 1.00 30.05 C
ATOM 14 N9 A B 37 25.388 23.147 11.834 1.00 26.60 N
ATOM 15 C8 A B 37 25.160 23.157 10.479 1.00 15.06 C
ATOM 16 N7 A B 37 23.887 23.104 10.153 1.00 22.36 N
ATOM 17 C5 A B 37 23.219 23.107 11.370 1.00 16.05 C
ATOM 18 C6 A B 37 21.846 23.055 11.699 1.00 31.53 C
ATOM 19 N6 A B 37 20.869 23.025 10.788 1.00 37.30 N
ATOM 20 N1 A B 37 21.507 23.044 13.005 1.00 23.84 N
ATOM 21 C2 A B 37 22.490 23.070 13.919 1.00 19.62 C
ATOM 22 N3 A B 37 23.807 23.124 13.730 1.00 37.26 N
ATOM 23 C4 A B 37 24.124 23.129 12.421 1.00 10.83 C
ATOM 24 P C B 38 28.919 18.856 12.989 1.00 31.96 P
ATOM 25 OP1 C B 38 29.860 18.285 13.979 1.00 42.39 O
ATOM 26 OP2 C B 38 29.105 18.605 11.538 1.00 36.57 O
ATOM 27 O5' C B 38 27.439 18.385 13.353 1.00 28.40 O
TER

Atoms:
OP1: (11.755,22.061,7.227)
OP2: (13.462,22.483,5.359)
C3': (15.847,23.735,9.631)
C1': (17.688,22.419,8.931)
C5': (14.118,21.916,9.082)
O6: (20.372,24.061,3.832)
O4': (16.519,21.619,8.950)
C8: (17.241,22.864,6.454)
C2: (21.504,23.547,7.168)
C6: (20.310,23.796,5.039)
C5: (19.175,23.406,5.782)
C4: (19.316,23.130,7.125)
P: (13.089,21.841,6.632)
C4': (15.461,22.268,9.700)
C2': (17.364,23.642,9.775)
O2': (17.761,23.402,11.110)
N1: (21.461,23.838,5.826)
N2: (22.712,23.626,7.741)
N3: (20.445,23.180,7.882)
N7: (17.861,23.234,5.371)
N9: (18.057,22.779,7.560)
O5': (14.210,22.248,7.697)
O3': (15.254,24.414,10.709)
OP1: (29.857,20.236,8.065)
OP2: (27.411,20.576,7.372)
C3': (28.018,21.273,12.485)
C1': (26.707,23.222,12.481)
C5': (29.321,21.842,10.385)
O4': (27.759,23.361,11.531)
C8: (25.160,23.157,10.479)
O2': (27.854,22.621,14.493)
C6: (21.846,23.055,11.699)
C5: (23.219,23.107,11.370)
C4: (24.124,23.129,12.421)
P: (28.664,21.105,7.953)
C4': (28.767,22.335,11.713)
C2': (27.123,22.087,13.407)
C2: (22.490,23.070,13.919)
N1: (21.507,23.044,13.005)
N3: (23.807,23.124,13.730)
N6: (20.869,23.025,10.788)
N7: (23.887,23.104,10.153)
N9: (25.388,23.147,11.834)
O5': (28.301,21.719,9.393)
O3': (28.899,20.440,13.223)
Image (generated by PyMOL):
PyMOL image
show in jmol