Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12504:12469
Extra
PDB:
ATOM 1 O3' G A2503 27.325 -69.520 54.340 1.00 52.94 O
ATOM 2 P U A2504 28.656 -68.737 54.841 1.00 56.45 P
ATOM 3 OP1 U A2504 28.854 -67.614 53.898 1.00 56.12 O
ATOM 4 OP2 U A2504 29.734 -69.721 55.011 1.00 56.76 O
ATOM 5 O5' U A2504 28.235 -68.161 56.239 1.00 56.13 O
ATOM 6 C5' U A2504 28.275 -68.943 57.402 1.00 56.32 C
ATOM 7 C4' U A2504 28.525 -68.065 58.581 1.00 55.89 C
ATOM 8 O4' U A2504 29.369 -68.789 59.507 1.00 56.05 O
ATOM 9 C3' U A2504 29.311 -66.828 58.237 1.00 55.42 C
ATOM 10 O3' U A2504 29.246 -65.926 59.343 1.00 55.02 O
ATOM 11 C2' U A2504 30.707 -67.427 58.152 1.00 55.59 C
ATOM 12 O2' U A2504 31.755 -66.493 58.189 1.00 55.21 O
ATOM 13 C1' U A2504 30.696 -68.346 59.381 1.00 55.84 C
ATOM 14 N1 U A2504 31.532 -69.534 59.259 1.00 56.26 N
ATOM 15 C2 U A2504 32.055 -69.998 60.456 1.00 56.35 C
ATOM 16 O2 U A2504 31.877 -69.492 61.553 1.00 56.10 O
ATOM 17 N3 U A2504 32.830 -71.101 60.381 1.00 56.76 N
ATOM 18 C4 U A2504 33.096 -71.778 59.250 1.00 57.09 C
ATOM 19 O4 U A2504 33.809 -72.746 59.421 1.00 57.45 O
ATOM 20 C5 U A2504 32.523 -71.258 58.038 1.00 56.99 C
ATOM 21 C6 U A2504 31.765 -70.164 58.076 1.00 56.58 C
ATOM 22 P G A2505 28.871 -64.379 59.147 1.00 53.21 P
ATOM 23 OP1 G A2505 29.957 -63.775 58.397 1.00 53.00 O
ATOM 24 OP2 G A2505 28.541 -63.835 60.502 1.00 52.95 O
ATOM 25 O5' G A2505 27.579 -64.429 58.236 1.00 53.36 O
TER
ATOM 1 O3' U B2468 27.922 -69.509 68.214 1.00 50.42 O
ATOM 2 P U B2469 29.244 -68.674 68.524 1.00 57.94 P
ATOM 3 OP1 U B2469 29.070 -68.091 69.870 1.00 57.72 O
ATOM 4 OP2 U B2469 29.469 -67.770 67.376 1.00 57.62 O
ATOM 5 O5' U B2469 30.347 -69.803 68.573 1.00 58.33 O
ATOM 6 C5' U B2469 30.274 -70.794 69.575 1.00 58.70 C
ATOM 7 C4' U B2469 31.509 -71.623 69.618 1.00 58.98 C
ATOM 8 O4' U B2469 31.534 -72.515 68.491 1.00 59.34 O
ATOM 9 C3' U B2469 32.802 -70.876 69.500 1.00 58.67 C
ATOM 10 O3' U B2469 33.164 -70.228 70.708 1.00 58.41 O
ATOM 11 C2' U B2469 33.755 -71.979 69.070 1.00 59.08 C
ATOM 12 O2' U B2469 34.092 -72.789 70.176 1.00 59.39 O
ATOM 13 C1' U B2469 32.860 -72.812 68.158 1.00 59.43 C
ATOM 14 N1 U B2469 33.065 -72.524 66.734 1.00 59.34 N
ATOM 15 C2 U B2469 34.173 -73.093 66.188 1.00 59.56 C
ATOM 16 O2 U B2469 34.939 -73.768 66.856 1.00 59.81 O
ATOM 17 N3 U B2469 34.348 -72.822 64.865 1.00 59.48 N
ATOM 18 C4 U B2469 33.538 -72.047 64.073 1.00 59.22 C
ATOM 19 O4 U B2469 33.839 -71.892 62.893 1.00 59.20 O
ATOM 20 C5 U B2469 32.400 -71.484 64.715 1.00 59.00 C
ATOM 21 C6 U B2469 32.205 -71.749 66.000 1.00 59.07 C
ATOM 22 P U B2470 34.038 -68.870 70.682 1.00 56.05 P
ATOM 23 OP1 U B2470 34.104 -68.369 72.076 1.00 55.87 O
ATOM 24 OP2 U B2470 33.475 -67.973 69.629 1.00 55.72 O
ATOM 25 O5' U B2470 35.455 -69.397 70.226 1.00 56.23 O
TER
ATOM 2 P U A2504 28.656 -68.737 54.841 1.00 56.45 P
ATOM 3 OP1 U A2504 28.854 -67.614 53.898 1.00 56.12 O
ATOM 4 OP2 U A2504 29.734 -69.721 55.011 1.00 56.76 O
ATOM 5 O5' U A2504 28.235 -68.161 56.239 1.00 56.13 O
ATOM 6 C5' U A2504 28.275 -68.943 57.402 1.00 56.32 C
ATOM 7 C4' U A2504 28.525 -68.065 58.581 1.00 55.89 C
ATOM 8 O4' U A2504 29.369 -68.789 59.507 1.00 56.05 O
ATOM 9 C3' U A2504 29.311 -66.828 58.237 1.00 55.42 C
ATOM 10 O3' U A2504 29.246 -65.926 59.343 1.00 55.02 O
ATOM 11 C2' U A2504 30.707 -67.427 58.152 1.00 55.59 C
ATOM 12 O2' U A2504 31.755 -66.493 58.189 1.00 55.21 O
ATOM 13 C1' U A2504 30.696 -68.346 59.381 1.00 55.84 C
ATOM 14 N1 U A2504 31.532 -69.534 59.259 1.00 56.26 N
ATOM 15 C2 U A2504 32.055 -69.998 60.456 1.00 56.35 C
ATOM 16 O2 U A2504 31.877 -69.492 61.553 1.00 56.10 O
ATOM 17 N3 U A2504 32.830 -71.101 60.381 1.00 56.76 N
ATOM 18 C4 U A2504 33.096 -71.778 59.250 1.00 57.09 C
ATOM 19 O4 U A2504 33.809 -72.746 59.421 1.00 57.45 O
ATOM 20 C5 U A2504 32.523 -71.258 58.038 1.00 56.99 C
ATOM 21 C6 U A2504 31.765 -70.164 58.076 1.00 56.58 C
ATOM 22 P G A2505 28.871 -64.379 59.147 1.00 53.21 P
ATOM 23 OP1 G A2505 29.957 -63.775 58.397 1.00 53.00 O
ATOM 24 OP2 G A2505 28.541 -63.835 60.502 1.00 52.95 O
ATOM 25 O5' G A2505 27.579 -64.429 58.236 1.00 53.36 O
TER
ATOM 1 O3' U B2468 27.922 -69.509 68.214 1.00 50.42 O
ATOM 2 P U B2469 29.244 -68.674 68.524 1.00 57.94 P
ATOM 3 OP1 U B2469 29.070 -68.091 69.870 1.00 57.72 O
ATOM 4 OP2 U B2469 29.469 -67.770 67.376 1.00 57.62 O
ATOM 5 O5' U B2469 30.347 -69.803 68.573 1.00 58.33 O
ATOM 6 C5' U B2469 30.274 -70.794 69.575 1.00 58.70 C
ATOM 7 C4' U B2469 31.509 -71.623 69.618 1.00 58.98 C
ATOM 8 O4' U B2469 31.534 -72.515 68.491 1.00 59.34 O
ATOM 9 C3' U B2469 32.802 -70.876 69.500 1.00 58.67 C
ATOM 10 O3' U B2469 33.164 -70.228 70.708 1.00 58.41 O
ATOM 11 C2' U B2469 33.755 -71.979 69.070 1.00 59.08 C
ATOM 12 O2' U B2469 34.092 -72.789 70.176 1.00 59.39 O
ATOM 13 C1' U B2469 32.860 -72.812 68.158 1.00 59.43 C
ATOM 14 N1 U B2469 33.065 -72.524 66.734 1.00 59.34 N
ATOM 15 C2 U B2469 34.173 -73.093 66.188 1.00 59.56 C
ATOM 16 O2 U B2469 34.939 -73.768 66.856 1.00 59.81 O
ATOM 17 N3 U B2469 34.348 -72.822 64.865 1.00 59.48 N
ATOM 18 C4 U B2469 33.538 -72.047 64.073 1.00 59.22 C
ATOM 19 O4 U B2469 33.839 -71.892 62.893 1.00 59.20 O
ATOM 20 C5 U B2469 32.400 -71.484 64.715 1.00 59.00 C
ATOM 21 C6 U B2469 32.205 -71.749 66.000 1.00 59.07 C
ATOM 22 P U B2470 34.038 -68.870 70.682 1.00 56.05 P
ATOM 23 OP1 U B2470 34.104 -68.369 72.076 1.00 55.87 O
ATOM 24 OP2 U B2470 33.475 -67.973 69.629 1.00 55.72 O
ATOM 25 O5' U B2470 35.455 -69.397 70.226 1.00 56.23 O
TER
Atoms:
C4: (33.096,-71.778,59.250)
N3: (32.830,-71.101,60.381)
OP1: (28.854,-67.614,53.898)
OP2: (29.734,-69.721,55.011)
C2: (32.055,-69.998,60.456)
C1': (30.696,-68.346,59.381)
C3': (29.311,-66.828,58.237)
O5': (28.235,-68.161,56.239)
O4': (29.369,-68.789,59.507)
C5': (28.275,-68.943,57.402)
P: (28.656,-68.737,54.841)
C4': (28.525,-68.065,58.581)
C2': (30.707,-67.427,58.152)
O2': (31.755,-66.493,58.189)
N1: (31.532,-69.534,59.259)
O4: (33.809,-72.746,59.421)
O2: (31.877,-69.492,61.553)
C6: (31.765,-70.164,58.076)
C5: (32.523,-71.258,58.038)
O3': (29.246,-65.926,59.343)
N3: (32.830,-71.101,60.381)
OP1: (28.854,-67.614,53.898)
OP2: (29.734,-69.721,55.011)
C2: (32.055,-69.998,60.456)
C1': (30.696,-68.346,59.381)
C3': (29.311,-66.828,58.237)
O5': (28.235,-68.161,56.239)
O4': (29.369,-68.789,59.507)
C5': (28.275,-68.943,57.402)
P: (28.656,-68.737,54.841)
C4': (28.525,-68.065,58.581)
C2': (30.707,-67.427,58.152)
O2': (31.755,-66.493,58.189)
N1: (31.532,-69.534,59.259)
O4: (33.809,-72.746,59.421)
O2: (31.877,-69.492,61.553)
C6: (31.765,-70.164,58.076)
C5: (32.523,-71.258,58.038)
O3': (29.246,-65.926,59.343)
C4: (33.538,-72.047,64.073)
N3: (34.348,-72.822,64.865)
OP1: (29.070,-68.091,69.870)
OP2: (29.469,-67.770,67.376)
C2: (34.173,-73.093,66.188)
C1': (32.860,-72.812,68.158)
C3': (32.802,-70.876,69.500)
O5': (30.347,-69.803,68.573)
O4': (31.534,-72.515,68.491)
C5': (30.274,-70.794,69.575)
P: (29.244,-68.674,68.524)
C4': (31.509,-71.623,69.618)
C2': (33.755,-71.979,69.070)
O2': (34.092,-72.789,70.176)
N1: (33.065,-72.524,66.734)
O4: (33.839,-71.892,62.893)
O2: (34.939,-73.768,66.856)
C6: (32.205,-71.749,66.000)
C5: (32.400,-71.484,64.715)
O3': (33.164,-70.228,70.708)
N3: (34.348,-72.822,64.865)
OP1: (29.070,-68.091,69.870)
OP2: (29.469,-67.770,67.376)
C2: (34.173,-73.093,66.188)
C1': (32.860,-72.812,68.158)
C3': (32.802,-70.876,69.500)
O5': (30.347,-69.803,68.573)
O4': (31.534,-72.515,68.491)
C5': (30.274,-70.794,69.575)
P: (29.244,-68.674,68.524)
C4': (31.509,-71.623,69.618)
C2': (33.755,-71.979,69.070)
O2': (34.092,-72.789,70.176)
N1: (33.065,-72.524,66.734)
O4: (33.839,-71.892,62.893)
O2: (34.939,-73.768,66.856)
C6: (32.205,-71.749,66.000)
C5: (32.400,-71.484,64.715)
O3': (33.164,-70.228,70.708)
Image (generated by PyMOL):