Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQ6:0580:0554
Extra
PDB:
ATOM 1 O3' A A 579 -6.429 103.573 106.133 1.00 73.44 O
ATOM 2 P G A 580 -6.367 104.064 104.604 1.00 72.82 P
ATOM 3 OP1 G A 580 -5.955 105.493 104.637 1.00 70.35 O
ATOM 4 OP2 G A 580 -7.625 103.669 103.916 1.00 72.44 O
ATOM 5 O5' G A 580 -5.207 103.181 103.962 1.00 73.38 O
ATOM 6 C5' G A 580 -3.826 103.389 104.314 1.00 70.17 C
ATOM 7 C4' G A 580 -2.957 102.397 103.588 1.00 68.98 C
ATOM 8 O4' G A 580 -3.297 101.057 104.024 1.00 68.63 O
ATOM 9 C3' G A 580 -3.137 102.347 102.081 1.00 68.30 C
ATOM 10 O3' G A 580 -2.356 103.334 101.431 1.00 70.50 O
ATOM 11 C2' G A 580 -2.623 100.955 101.743 1.00 68.29 C
ATOM 12 O2' G A 580 -1.217 100.883 101.671 1.00 68.78 O
ATOM 13 C1' G A 580 -3.119 100.149 102.946 1.00 68.22 C
ATOM 14 N9 G A 580 -4.397 99.508 102.667 1.00 67.93 N
ATOM 15 C8 G A 580 -5.653 100.023 102.889 1.00 68.56 C
ATOM 16 N7 G A 580 -6.608 99.228 102.491 1.00 69.05 N
ATOM 17 C5 G A 580 -5.942 98.119 101.989 1.00 66.65 C
ATOM 18 C6 G A 580 -6.449 96.933 101.421 1.00 66.50 C
ATOM 19 O6 G A 580 -7.624 96.607 101.246 1.00 70.28 O
ATOM 20 N1 G A 580 -5.430 96.074 101.036 1.00 66.53 N
ATOM 21 C2 G A 580 -4.092 96.324 101.182 1.00 66.91 C
ATOM 22 N2 G A 580 -3.265 95.372 100.735 1.00 66.52 N
ATOM 23 N3 G A 580 -3.602 97.427 101.722 1.00 66.23 N
ATOM 24 C4 G A 580 -4.578 98.275 102.098 1.00 66.56 C
ATOM 25 P A A 581 -3.040 104.692 100.911 1.00 72.67 P
ATOM 26 OP1 A A 581 -2.995 105.665 102.037 1.00 71.61 O
ATOM 27 OP2 A A 581 -4.334 104.389 100.253 1.00 73.08 O
ATOM 28 O5' A A 581 -2.035 105.201 99.786 1.00 74.19 O
TER
ATOM 1 O3' A B 553 -1.044 91.278 97.644 1.00 63.05 O
ATOM 2 P A B 554 -1.171 90.729 99.146 1.00 62.67 P
ATOM 3 OP1 A B 554 -1.340 89.249 99.050 1.00 60.79 O
ATOM 4 OP2 A B 554 -2.189 91.553 99.851 1.00 61.89 O
ATOM 5 O5' A B 554 0.240 91.057 99.819 1.00 64.87 O
ATOM 6 C5' A B 554 1.466 90.430 99.356 1.00 62.97 C
ATOM 7 C4' A B 554 2.667 91.244 99.787 1.00 60.22 C
ATOM 8 O4' A B 554 2.565 92.580 99.225 1.00 60.23 O
ATOM 9 C3' A B 554 2.771 91.495 101.279 1.00 59.91 C
ATOM 10 O3' A B 554 3.352 90.398 101.959 1.00 59.63 O
ATOM 11 C2' A B 554 3.627 92.749 101.339 1.00 58.82 C
ATOM 12 O2' A B 554 5.000 92.486 101.127 1.00 58.49 O
ATOM 13 C1' A B 554 3.074 93.531 100.148 1.00 58.76 C
ATOM 14 N9 A B 554 1.989 94.435 100.531 1.00 56.53 N
ATOM 15 C8 A B 554 0.651 94.156 100.635 1.00 57.26 C
ATOM 16 N7 A B 554 -0.072 95.172 101.043 1.00 56.74 N
ATOM 17 C5 A B 554 0.851 96.192 101.205 1.00 56.81 C
ATOM 18 C6 A B 554 0.720 97.534 101.618 1.00 56.34 C
ATOM 19 N6 A B 554 -0.440 98.099 101.951 1.00 57.66 N
ATOM 20 N1 A B 554 1.838 98.284 101.675 1.00 54.75 N
ATOM 21 C2 A B 554 3.004 97.718 101.338 1.00 56.69 C
ATOM 22 N3 A B 554 3.255 96.473 100.935 1.00 56.65 N
ATOM 23 C4 A B 554 2.124 95.753 100.888 1.00 56.44 C
ATOM 24 P U B 555 2.710 89.906 103.343 1.00 58.09 P
ATOM 25 OP1 U B 555 3.591 88.844 103.875 1.00 55.73 O
ATOM 26 OP2 U B 555 1.280 89.608 103.083 1.00 59.59 O
ATOM 27 O5' U B 555 2.779 91.195 104.282 1.00 55.88 O
TER
ATOM 2 P G A 580 -6.367 104.064 104.604 1.00 72.82 P
ATOM 3 OP1 G A 580 -5.955 105.493 104.637 1.00 70.35 O
ATOM 4 OP2 G A 580 -7.625 103.669 103.916 1.00 72.44 O
ATOM 5 O5' G A 580 -5.207 103.181 103.962 1.00 73.38 O
ATOM 6 C5' G A 580 -3.826 103.389 104.314 1.00 70.17 C
ATOM 7 C4' G A 580 -2.957 102.397 103.588 1.00 68.98 C
ATOM 8 O4' G A 580 -3.297 101.057 104.024 1.00 68.63 O
ATOM 9 C3' G A 580 -3.137 102.347 102.081 1.00 68.30 C
ATOM 10 O3' G A 580 -2.356 103.334 101.431 1.00 70.50 O
ATOM 11 C2' G A 580 -2.623 100.955 101.743 1.00 68.29 C
ATOM 12 O2' G A 580 -1.217 100.883 101.671 1.00 68.78 O
ATOM 13 C1' G A 580 -3.119 100.149 102.946 1.00 68.22 C
ATOM 14 N9 G A 580 -4.397 99.508 102.667 1.00 67.93 N
ATOM 15 C8 G A 580 -5.653 100.023 102.889 1.00 68.56 C
ATOM 16 N7 G A 580 -6.608 99.228 102.491 1.00 69.05 N
ATOM 17 C5 G A 580 -5.942 98.119 101.989 1.00 66.65 C
ATOM 18 C6 G A 580 -6.449 96.933 101.421 1.00 66.50 C
ATOM 19 O6 G A 580 -7.624 96.607 101.246 1.00 70.28 O
ATOM 20 N1 G A 580 -5.430 96.074 101.036 1.00 66.53 N
ATOM 21 C2 G A 580 -4.092 96.324 101.182 1.00 66.91 C
ATOM 22 N2 G A 580 -3.265 95.372 100.735 1.00 66.52 N
ATOM 23 N3 G A 580 -3.602 97.427 101.722 1.00 66.23 N
ATOM 24 C4 G A 580 -4.578 98.275 102.098 1.00 66.56 C
ATOM 25 P A A 581 -3.040 104.692 100.911 1.00 72.67 P
ATOM 26 OP1 A A 581 -2.995 105.665 102.037 1.00 71.61 O
ATOM 27 OP2 A A 581 -4.334 104.389 100.253 1.00 73.08 O
ATOM 28 O5' A A 581 -2.035 105.201 99.786 1.00 74.19 O
TER
ATOM 1 O3' A B 553 -1.044 91.278 97.644 1.00 63.05 O
ATOM 2 P A B 554 -1.171 90.729 99.146 1.00 62.67 P
ATOM 3 OP1 A B 554 -1.340 89.249 99.050 1.00 60.79 O
ATOM 4 OP2 A B 554 -2.189 91.553 99.851 1.00 61.89 O
ATOM 5 O5' A B 554 0.240 91.057 99.819 1.00 64.87 O
ATOM 6 C5' A B 554 1.466 90.430 99.356 1.00 62.97 C
ATOM 7 C4' A B 554 2.667 91.244 99.787 1.00 60.22 C
ATOM 8 O4' A B 554 2.565 92.580 99.225 1.00 60.23 O
ATOM 9 C3' A B 554 2.771 91.495 101.279 1.00 59.91 C
ATOM 10 O3' A B 554 3.352 90.398 101.959 1.00 59.63 O
ATOM 11 C2' A B 554 3.627 92.749 101.339 1.00 58.82 C
ATOM 12 O2' A B 554 5.000 92.486 101.127 1.00 58.49 O
ATOM 13 C1' A B 554 3.074 93.531 100.148 1.00 58.76 C
ATOM 14 N9 A B 554 1.989 94.435 100.531 1.00 56.53 N
ATOM 15 C8 A B 554 0.651 94.156 100.635 1.00 57.26 C
ATOM 16 N7 A B 554 -0.072 95.172 101.043 1.00 56.74 N
ATOM 17 C5 A B 554 0.851 96.192 101.205 1.00 56.81 C
ATOM 18 C6 A B 554 0.720 97.534 101.618 1.00 56.34 C
ATOM 19 N6 A B 554 -0.440 98.099 101.951 1.00 57.66 N
ATOM 20 N1 A B 554 1.838 98.284 101.675 1.00 54.75 N
ATOM 21 C2 A B 554 3.004 97.718 101.338 1.00 56.69 C
ATOM 22 N3 A B 554 3.255 96.473 100.935 1.00 56.65 N
ATOM 23 C4 A B 554 2.124 95.753 100.888 1.00 56.44 C
ATOM 24 P U B 555 2.710 89.906 103.343 1.00 58.09 P
ATOM 25 OP1 U B 555 3.591 88.844 103.875 1.00 55.73 O
ATOM 26 OP2 U B 555 1.280 89.608 103.083 1.00 59.59 O
ATOM 27 O5' U B 555 2.779 91.195 104.282 1.00 55.88 O
TER
Atoms:
OP1: (-5.955,105.493,104.637)
OP2: (-7.625,103.669,103.916)
C3': (-3.137,102.347,102.081)
C1': (-3.119,100.149,102.946)
C5': (-3.826,103.389,104.314)
O6: (-7.624,96.607,101.246)
O4': (-3.297,101.057,104.024)
C8: (-5.653,100.023,102.889)
C2: (-4.092,96.324,101.182)
C6: (-6.449,96.933,101.421)
C5: (-5.942,98.119,101.989)
C4: (-4.578,98.275,102.098)
P: (-6.367,104.064,104.604)
C4': (-2.957,102.397,103.588)
C2': (-2.623,100.955,101.743)
O2': (-1.217,100.883,101.671)
N1: (-5.430,96.074,101.036)
N2: (-3.265,95.372,100.735)
N3: (-3.602,97.427,101.722)
N7: (-6.608,99.228,102.491)
N9: (-4.397,99.508,102.667)
O5': (-5.207,103.181,103.962)
O3': (-2.356,103.334,101.431)
OP2: (-7.625,103.669,103.916)
C3': (-3.137,102.347,102.081)
C1': (-3.119,100.149,102.946)
C5': (-3.826,103.389,104.314)
O6: (-7.624,96.607,101.246)
O4': (-3.297,101.057,104.024)
C8: (-5.653,100.023,102.889)
C2: (-4.092,96.324,101.182)
C6: (-6.449,96.933,101.421)
C5: (-5.942,98.119,101.989)
C4: (-4.578,98.275,102.098)
P: (-6.367,104.064,104.604)
C4': (-2.957,102.397,103.588)
C2': (-2.623,100.955,101.743)
O2': (-1.217,100.883,101.671)
N1: (-5.430,96.074,101.036)
N2: (-3.265,95.372,100.735)
N3: (-3.602,97.427,101.722)
N7: (-6.608,99.228,102.491)
N9: (-4.397,99.508,102.667)
O5': (-5.207,103.181,103.962)
O3': (-2.356,103.334,101.431)
OP1: (-1.340,89.249,99.050)
OP2: (-2.189,91.553,99.851)
C3': (2.771,91.495,101.279)
C1': (3.074,93.531,100.148)
C5': (1.466,90.430,99.356)
O4': (2.565,92.580,99.225)
C8: (0.651,94.156,100.635)
O2': (5.000,92.486,101.127)
C6: (0.720,97.534,101.618)
C5: (0.851,96.192,101.205)
C4: (2.124,95.753,100.888)
P: (-1.171,90.729,99.146)
C4': (2.667,91.244,99.787)
C2': (3.627,92.749,101.339)
C2: (3.004,97.718,101.338)
N1: (1.838,98.284,101.675)
N3: (3.255,96.473,100.935)
N6: (-0.440,98.099,101.951)
N7: (-0.072,95.172,101.043)
N9: (1.989,94.435,100.531)
O5': (0.240,91.057,99.819)
O3': (3.352,90.398,101.959)
OP2: (-2.189,91.553,99.851)
C3': (2.771,91.495,101.279)
C1': (3.074,93.531,100.148)
C5': (1.466,90.430,99.356)
O4': (2.565,92.580,99.225)
C8: (0.651,94.156,100.635)
O2': (5.000,92.486,101.127)
C6: (0.720,97.534,101.618)
C5: (0.851,96.192,101.205)
C4: (2.124,95.753,100.888)
P: (-1.171,90.729,99.146)
C4': (2.667,91.244,99.787)
C2': (3.627,92.749,101.339)
C2: (3.004,97.718,101.338)
N1: (1.838,98.284,101.675)
N3: (3.255,96.473,100.935)
N6: (-0.440,98.099,101.951)
N7: (-0.072,95.172,101.043)
N9: (1.989,94.435,100.531)
O5': (0.240,91.057,99.819)
O3': (3.352,90.398,101.959)
Image (generated by PyMOL):