Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3KNI:A2608:A1409
Extra
PDB:
ATOM 1 O3' U A2607 10.565 -53.292 22.308 1.00 58.00 O
ATOM 2 P C A2608 10.096 -52.314 21.113 1.00 53.61 P
ATOM 3 OP1 C A2608 9.669 -53.087 19.914 1.00 43.76 O
ATOM 4 OP2 C A2608 11.158 -51.285 20.977 1.00 70.76 O
ATOM 5 O5' C A2608 8.775 -51.652 21.723 1.00 57.56 O
ATOM 6 C5' C A2608 8.542 -50.245 21.663 1.00 59.45 C
ATOM 7 C4' C A2608 7.982 -49.724 22.973 1.00 54.38 C
ATOM 8 O4' C A2608 6.850 -50.524 23.405 1.00 52.64 O
ATOM 9 C3' C A2608 8.903 -49.745 24.176 1.00 60.19 C
ATOM 10 O3' C A2608 9.796 -48.636 24.137 1.00 67.32 O
ATOM 11 C2' C A2608 7.912 -49.653 25.329 1.00 51.90 C
ATOM 12 O2' C A2608 7.415 -48.335 25.466 1.00 56.45 O
ATOM 13 C1' C A2608 6.761 -50.510 24.820 1.00 52.10 C
ATOM 14 N1 C A2608 6.813 -51.892 25.315 1.00 51.06 N
ATOM 15 C2 C A2608 6.465 -52.175 26.657 1.00 52.38 C
ATOM 16 O2 C A2608 6.107 -51.255 27.397 1.00 47.60 O
ATOM 17 N3 C A2608 6.526 -53.454 27.095 1.00 57.55 N
ATOM 18 C4 C A2608 6.903 -54.427 26.254 1.00 53.03 C
ATOM 19 N4 C A2608 6.924 -55.685 26.699 1.00 48.09 N
ATOM 20 C5 C A2608 7.264 -54.159 24.903 1.00 49.48 C
ATOM 21 C6 C A2608 7.201 -52.895 24.481 1.00 52.62 C
ATOM 22 P C A2609 11.254 -48.760 24.825 1.00 71.52 P
ATOM 23 OP1 C A2609 12.019 -47.543 24.430 1.00 71.29 O
ATOM 24 OP2 C A2609 11.798 -50.122 24.529 1.00 54.87 O
ATOM 25 O5' C A2609 10.985 -48.655 26.393 1.00 62.59 O
TER
ATOM 1 O3' C B1408 2.432 -59.631 27.222 1.00 77.55 O
ATOM 2 P A B1409 2.039 -60.082 28.718 1.00 82.36 P
ATOM 3 OP1 A B1409 0.630 -60.589 28.734 1.00 65.42 O
ATOM 4 OP2 A B1409 2.443 -58.988 29.662 1.00 66.75 O
ATOM 5 O5' A B1409 3.039 -61.298 28.965 1.00 76.19 O
ATOM 6 C5' A B1409 2.916 -62.516 28.224 1.00 71.32 C
ATOM 7 C4' A B1409 4.250 -62.951 27.614 1.00 69.42 C
ATOM 8 O4' A B1409 4.575 -62.200 26.408 1.00 71.82 O
ATOM 9 C3' A B1409 5.511 -62.966 28.467 1.00 63.34 C
ATOM 10 O3' A B1409 6.275 -64.113 28.133 1.00 54.02 O
ATOM 11 C2' A B1409 6.295 -61.777 27.941 1.00 59.83 C
ATOM 12 O2' A B1409 7.685 -61.902 28.153 1.00 60.35 O
ATOM 13 C1' A B1409 5.930 -61.797 26.451 1.00 58.00 C
ATOM 14 N9 A B1409 6.030 -60.484 25.804 1.00 54.93 N
ATOM 15 C8 A B1409 6.146 -59.275 26.448 1.00 60.76 C
ATOM 16 N7 A B1409 6.163 -58.242 25.644 1.00 59.93 N
ATOM 17 C5 A B1409 6.060 -58.802 24.380 1.00 55.37 C
ATOM 18 C6 A B1409 6.000 -58.222 23.103 1.00 55.23 C
ATOM 19 N6 A B1409 6.009 -56.903 22.886 1.00 62.20 N
ATOM 20 N1 A B1409 5.911 -59.049 22.043 1.00 53.59 N
ATOM 21 C2 A B1409 5.870 -60.370 22.263 1.00 54.54 C
ATOM 22 N3 A B1409 5.904 -61.039 23.421 1.00 58.93 N
ATOM 23 C4 A B1409 5.999 -60.186 24.457 1.00 55.88 C
ATOM 24 P U B1410 6.940 -64.987 29.294 1.00 57.47 P
ATOM 25 OP1 U B1410 8.072 -65.803 28.778 1.00 54.75 O
ATOM 26 OP2 U B1410 5.790 -65.660 29.955 1.00 68.50 O
ATOM 27 O5' U B1410 7.559 -63.906 30.290 1.00 58.08 O
TER
ATOM 2 P C A2608 10.096 -52.314 21.113 1.00 53.61 P
ATOM 3 OP1 C A2608 9.669 -53.087 19.914 1.00 43.76 O
ATOM 4 OP2 C A2608 11.158 -51.285 20.977 1.00 70.76 O
ATOM 5 O5' C A2608 8.775 -51.652 21.723 1.00 57.56 O
ATOM 6 C5' C A2608 8.542 -50.245 21.663 1.00 59.45 C
ATOM 7 C4' C A2608 7.982 -49.724 22.973 1.00 54.38 C
ATOM 8 O4' C A2608 6.850 -50.524 23.405 1.00 52.64 O
ATOM 9 C3' C A2608 8.903 -49.745 24.176 1.00 60.19 C
ATOM 10 O3' C A2608 9.796 -48.636 24.137 1.00 67.32 O
ATOM 11 C2' C A2608 7.912 -49.653 25.329 1.00 51.90 C
ATOM 12 O2' C A2608 7.415 -48.335 25.466 1.00 56.45 O
ATOM 13 C1' C A2608 6.761 -50.510 24.820 1.00 52.10 C
ATOM 14 N1 C A2608 6.813 -51.892 25.315 1.00 51.06 N
ATOM 15 C2 C A2608 6.465 -52.175 26.657 1.00 52.38 C
ATOM 16 O2 C A2608 6.107 -51.255 27.397 1.00 47.60 O
ATOM 17 N3 C A2608 6.526 -53.454 27.095 1.00 57.55 N
ATOM 18 C4 C A2608 6.903 -54.427 26.254 1.00 53.03 C
ATOM 19 N4 C A2608 6.924 -55.685 26.699 1.00 48.09 N
ATOM 20 C5 C A2608 7.264 -54.159 24.903 1.00 49.48 C
ATOM 21 C6 C A2608 7.201 -52.895 24.481 1.00 52.62 C
ATOM 22 P C A2609 11.254 -48.760 24.825 1.00 71.52 P
ATOM 23 OP1 C A2609 12.019 -47.543 24.430 1.00 71.29 O
ATOM 24 OP2 C A2609 11.798 -50.122 24.529 1.00 54.87 O
ATOM 25 O5' C A2609 10.985 -48.655 26.393 1.00 62.59 O
TER
ATOM 1 O3' C B1408 2.432 -59.631 27.222 1.00 77.55 O
ATOM 2 P A B1409 2.039 -60.082 28.718 1.00 82.36 P
ATOM 3 OP1 A B1409 0.630 -60.589 28.734 1.00 65.42 O
ATOM 4 OP2 A B1409 2.443 -58.988 29.662 1.00 66.75 O
ATOM 5 O5' A B1409 3.039 -61.298 28.965 1.00 76.19 O
ATOM 6 C5' A B1409 2.916 -62.516 28.224 1.00 71.32 C
ATOM 7 C4' A B1409 4.250 -62.951 27.614 1.00 69.42 C
ATOM 8 O4' A B1409 4.575 -62.200 26.408 1.00 71.82 O
ATOM 9 C3' A B1409 5.511 -62.966 28.467 1.00 63.34 C
ATOM 10 O3' A B1409 6.275 -64.113 28.133 1.00 54.02 O
ATOM 11 C2' A B1409 6.295 -61.777 27.941 1.00 59.83 C
ATOM 12 O2' A B1409 7.685 -61.902 28.153 1.00 60.35 O
ATOM 13 C1' A B1409 5.930 -61.797 26.451 1.00 58.00 C
ATOM 14 N9 A B1409 6.030 -60.484 25.804 1.00 54.93 N
ATOM 15 C8 A B1409 6.146 -59.275 26.448 1.00 60.76 C
ATOM 16 N7 A B1409 6.163 -58.242 25.644 1.00 59.93 N
ATOM 17 C5 A B1409 6.060 -58.802 24.380 1.00 55.37 C
ATOM 18 C6 A B1409 6.000 -58.222 23.103 1.00 55.23 C
ATOM 19 N6 A B1409 6.009 -56.903 22.886 1.00 62.20 N
ATOM 20 N1 A B1409 5.911 -59.049 22.043 1.00 53.59 N
ATOM 21 C2 A B1409 5.870 -60.370 22.263 1.00 54.54 C
ATOM 22 N3 A B1409 5.904 -61.039 23.421 1.00 58.93 N
ATOM 23 C4 A B1409 5.999 -60.186 24.457 1.00 55.88 C
ATOM 24 P U B1410 6.940 -64.987 29.294 1.00 57.47 P
ATOM 25 OP1 U B1410 8.072 -65.803 28.778 1.00 54.75 O
ATOM 26 OP2 U B1410 5.790 -65.660 29.955 1.00 68.50 O
ATOM 27 O5' U B1410 7.559 -63.906 30.290 1.00 58.08 O
TER
Atoms:
C2: (6.465,-52.175,26.657)
OP1: (9.669,-53.087,19.914)
OP2: (11.158,-51.285,20.977)
C4: (6.903,-54.427,26.254)
O5': (8.775,-51.652,21.723)
C3': (8.903,-49.745,24.176)
C1': (6.761,-50.510,24.820)
O4': (6.850,-50.524,23.405)
C5': (8.542,-50.245,21.663)
P: (10.096,-52.314,21.113)
O2: (6.107,-51.255,27.397)
C4': (7.982,-49.724,22.973)
C2': (7.912,-49.653,25.329)
O2': (7.415,-48.335,25.466)
N1: (6.813,-51.892,25.315)
N3: (6.526,-53.454,27.095)
N4: (6.924,-55.685,26.699)
C6: (7.201,-52.895,24.481)
C5: (7.264,-54.159,24.903)
O3': (9.796,-48.636,24.137)
OP1: (9.669,-53.087,19.914)
OP2: (11.158,-51.285,20.977)
C4: (6.903,-54.427,26.254)
O5': (8.775,-51.652,21.723)
C3': (8.903,-49.745,24.176)
C1': (6.761,-50.510,24.820)
O4': (6.850,-50.524,23.405)
C5': (8.542,-50.245,21.663)
P: (10.096,-52.314,21.113)
O2: (6.107,-51.255,27.397)
C4': (7.982,-49.724,22.973)
C2': (7.912,-49.653,25.329)
O2': (7.415,-48.335,25.466)
N1: (6.813,-51.892,25.315)
N3: (6.526,-53.454,27.095)
N4: (6.924,-55.685,26.699)
C6: (7.201,-52.895,24.481)
C5: (7.264,-54.159,24.903)
O3': (9.796,-48.636,24.137)
OP1: (0.630,-60.589,28.734)
OP2: (2.443,-58.988,29.662)
C3': (5.511,-62.966,28.467)
C1': (5.930,-61.797,26.451)
C5': (2.916,-62.516,28.224)
O4': (4.575,-62.200,26.408)
C8: (6.146,-59.275,26.448)
O2': (7.685,-61.902,28.153)
C6: (6.000,-58.222,23.103)
C5: (6.060,-58.802,24.380)
C4: (5.999,-60.186,24.457)
P: (2.039,-60.082,28.718)
C4': (4.250,-62.951,27.614)
C2': (6.295,-61.777,27.941)
C2: (5.870,-60.370,22.263)
N1: (5.911,-59.049,22.043)
N3: (5.904,-61.039,23.421)
N6: (6.009,-56.903,22.886)
N7: (6.163,-58.242,25.644)
N9: (6.030,-60.484,25.804)
O5': (3.039,-61.298,28.965)
O3': (6.275,-64.113,28.133)
OP2: (2.443,-58.988,29.662)
C3': (5.511,-62.966,28.467)
C1': (5.930,-61.797,26.451)
C5': (2.916,-62.516,28.224)
O4': (4.575,-62.200,26.408)
C8: (6.146,-59.275,26.448)
O2': (7.685,-61.902,28.153)
C6: (6.000,-58.222,23.103)
C5: (6.060,-58.802,24.380)
C4: (5.999,-60.186,24.457)
P: (2.039,-60.082,28.718)
C4': (4.250,-62.951,27.614)
C2': (6.295,-61.777,27.941)
C2: (5.870,-60.370,22.263)
N1: (5.911,-59.049,22.043)
N3: (5.904,-61.039,23.421)
N6: (6.009,-56.903,22.886)
N7: (6.163,-58.242,25.644)
N9: (6.030,-60.484,25.804)
O5': (3.039,-61.298,28.965)
O3': (6.275,-64.113,28.133)
Image (generated by PyMOL):