Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VBZ:B56:B55
Extra
PDB:
ATOM 1 O3' U A 55 52.604 54.185 83.122 1.00 78.16 O
ATOM 2 P C A 56 51.345 54.599 84.027 1.00 78.48 P
ATOM 3 OP1 C A 56 51.436 53.888 85.329 1.00 78.48 O
ATOM 4 OP2 C A 56 50.129 54.470 83.190 1.00 77.49 O
ATOM 5 O5' C A 56 51.586 56.151 84.280 1.00 78.74 O
ATOM 6 C5' C A 56 50.536 57.004 84.711 1.00 77.47 C
ATOM 7 C4' C A 56 50.328 58.113 83.709 1.00 76.40 C
ATOM 8 O4' C A 56 51.608 58.738 83.421 1.00 76.64 O
ATOM 9 C3' C A 56 49.795 57.688 82.349 1.00 74.96 C
ATOM 10 O3' C A 56 48.375 57.652 82.374 1.00 73.31 O
ATOM 11 C2' C A 56 50.284 58.808 81.439 1.00 75.39 C
ATOM 12 O2' C A 56 49.417 59.922 81.495 1.00 75.57 O
ATOM 13 C1' C A 56 51.631 59.172 82.072 1.00 75.78 C
ATOM 14 N1 C A 56 52.776 58.546 81.396 1.00 75.91 N
ATOM 15 C2 C A 56 53.374 59.220 80.332 1.00 75.85 C
ATOM 16 O2 C A 56 52.938 60.331 80.010 1.00 76.60 O
ATOM 17 N3 C A 56 54.410 58.648 79.680 1.00 75.63 N
ATOM 18 C4 C A 56 54.854 57.448 80.059 1.00 76.67 C
ATOM 19 N4 C A 56 55.872 56.914 79.383 1.00 75.76 N
ATOM 20 C5 C A 56 54.269 56.738 81.150 1.00 77.03 C
ATOM 21 C6 C A 56 53.242 57.322 81.786 1.00 76.73 C
ATOM 22 P C A 57 47.580 56.656 81.396 1.00 71.29 P
ATOM 23 OP1 C A 57 46.132 56.787 81.714 1.00 70.72 O
ATOM 24 OP2 C A 57 48.247 55.327 81.476 1.00 70.11 O
ATOM 25 O5' C A 57 47.805 57.261 79.943 1.00 68.35 O
TER
ATOM 1 O3' C B 54 54.136 49.233 86.484 1.00 53.16 O
ATOM 2 P U B 55 55.292 49.589 85.445 1.00 59.52 P
ATOM 3 OP1 U B 55 55.400 48.503 84.449 1.00 61.39 O
ATOM 4 OP2 U B 55 56.473 49.970 86.245 1.00 60.28 O
ATOM 5 O5' U B 55 54.736 50.880 84.709 1.00 65.02 O
ATOM 6 C5' U B 55 54.520 52.087 85.436 1.00 71.57 C
ATOM 7 C4' U B 55 54.326 53.235 84.481 1.00 75.16 C
ATOM 8 O4' U B 55 55.584 53.536 83.821 1.00 77.48 O
ATOM 9 C3' U B 55 53.297 52.981 83.384 1.00 76.68 C
ATOM 10 O3' U B 55 52.604 54.185 83.122 1.00 78.16 O
ATOM 11 C2' U B 55 54.156 52.649 82.170 1.00 78.06 C
ATOM 12 O2' U B 55 53.568 53.056 80.955 1.00 78.30 O
ATOM 13 C1' U B 55 55.399 53.497 82.423 1.00 79.82 C
ATOM 14 N1 U B 55 56.602 52.933 81.797 1.00 83.24 N
ATOM 15 C2 U B 55 57.028 53.516 80.620 1.00 85.03 C
ATOM 16 O2 U B 55 56.448 54.467 80.112 1.00 86.27 O
ATOM 17 N3 U B 55 58.151 52.946 80.062 1.00 85.44 N
ATOM 18 C4 U B 55 58.876 51.876 80.560 1.00 85.49 C
ATOM 19 O4 U B 55 59.872 51.475 79.949 1.00 85.84 O
ATOM 20 C5 U B 55 58.370 51.332 81.784 1.00 84.92 C
ATOM 21 C6 U B 55 57.278 51.867 82.348 1.00 84.01 C
ATOM 22 P C B 56 51.345 54.599 84.027 1.00 78.48 P
ATOM 23 OP1 C B 56 51.436 53.888 85.329 1.00 78.48 O
ATOM 24 OP2 C B 56 50.129 54.470 83.190 1.00 77.49 O
ATOM 25 O5' C B 56 51.586 56.151 84.280 1.00 78.74 O
TER
ATOM 2 P C A 56 51.345 54.599 84.027 1.00 78.48 P
ATOM 3 OP1 C A 56 51.436 53.888 85.329 1.00 78.48 O
ATOM 4 OP2 C A 56 50.129 54.470 83.190 1.00 77.49 O
ATOM 5 O5' C A 56 51.586 56.151 84.280 1.00 78.74 O
ATOM 6 C5' C A 56 50.536 57.004 84.711 1.00 77.47 C
ATOM 7 C4' C A 56 50.328 58.113 83.709 1.00 76.40 C
ATOM 8 O4' C A 56 51.608 58.738 83.421 1.00 76.64 O
ATOM 9 C3' C A 56 49.795 57.688 82.349 1.00 74.96 C
ATOM 10 O3' C A 56 48.375 57.652 82.374 1.00 73.31 O
ATOM 11 C2' C A 56 50.284 58.808 81.439 1.00 75.39 C
ATOM 12 O2' C A 56 49.417 59.922 81.495 1.00 75.57 O
ATOM 13 C1' C A 56 51.631 59.172 82.072 1.00 75.78 C
ATOM 14 N1 C A 56 52.776 58.546 81.396 1.00 75.91 N
ATOM 15 C2 C A 56 53.374 59.220 80.332 1.00 75.85 C
ATOM 16 O2 C A 56 52.938 60.331 80.010 1.00 76.60 O
ATOM 17 N3 C A 56 54.410 58.648 79.680 1.00 75.63 N
ATOM 18 C4 C A 56 54.854 57.448 80.059 1.00 76.67 C
ATOM 19 N4 C A 56 55.872 56.914 79.383 1.00 75.76 N
ATOM 20 C5 C A 56 54.269 56.738 81.150 1.00 77.03 C
ATOM 21 C6 C A 56 53.242 57.322 81.786 1.00 76.73 C
ATOM 22 P C A 57 47.580 56.656 81.396 1.00 71.29 P
ATOM 23 OP1 C A 57 46.132 56.787 81.714 1.00 70.72 O
ATOM 24 OP2 C A 57 48.247 55.327 81.476 1.00 70.11 O
ATOM 25 O5' C A 57 47.805 57.261 79.943 1.00 68.35 O
TER
ATOM 1 O3' C B 54 54.136 49.233 86.484 1.00 53.16 O
ATOM 2 P U B 55 55.292 49.589 85.445 1.00 59.52 P
ATOM 3 OP1 U B 55 55.400 48.503 84.449 1.00 61.39 O
ATOM 4 OP2 U B 55 56.473 49.970 86.245 1.00 60.28 O
ATOM 5 O5' U B 55 54.736 50.880 84.709 1.00 65.02 O
ATOM 6 C5' U B 55 54.520 52.087 85.436 1.00 71.57 C
ATOM 7 C4' U B 55 54.326 53.235 84.481 1.00 75.16 C
ATOM 8 O4' U B 55 55.584 53.536 83.821 1.00 77.48 O
ATOM 9 C3' U B 55 53.297 52.981 83.384 1.00 76.68 C
ATOM 10 O3' U B 55 52.604 54.185 83.122 1.00 78.16 O
ATOM 11 C2' U B 55 54.156 52.649 82.170 1.00 78.06 C
ATOM 12 O2' U B 55 53.568 53.056 80.955 1.00 78.30 O
ATOM 13 C1' U B 55 55.399 53.497 82.423 1.00 79.82 C
ATOM 14 N1 U B 55 56.602 52.933 81.797 1.00 83.24 N
ATOM 15 C2 U B 55 57.028 53.516 80.620 1.00 85.03 C
ATOM 16 O2 U B 55 56.448 54.467 80.112 1.00 86.27 O
ATOM 17 N3 U B 55 58.151 52.946 80.062 1.00 85.44 N
ATOM 18 C4 U B 55 58.876 51.876 80.560 1.00 85.49 C
ATOM 19 O4 U B 55 59.872 51.475 79.949 1.00 85.84 O
ATOM 20 C5 U B 55 58.370 51.332 81.784 1.00 84.92 C
ATOM 21 C6 U B 55 57.278 51.867 82.348 1.00 84.01 C
ATOM 22 P C B 56 51.345 54.599 84.027 1.00 78.48 P
ATOM 23 OP1 C B 56 51.436 53.888 85.329 1.00 78.48 O
ATOM 24 OP2 C B 56 50.129 54.470 83.190 1.00 77.49 O
ATOM 25 O5' C B 56 51.586 56.151 84.280 1.00 78.74 O
TER
Atoms:
C2: (53.374,59.220,80.332)
OP1: (51.436,53.888,85.329)
OP2: (50.129,54.470,83.190)
C4: (54.854,57.448,80.059)
O5': (51.586,56.151,84.280)
C3': (49.795,57.688,82.349)
C1': (51.631,59.172,82.072)
O4': (51.608,58.738,83.421)
C5': (50.536,57.004,84.711)
P: (51.345,54.599,84.027)
O2: (52.938,60.331,80.010)
C4': (50.328,58.113,83.709)
C2': (50.284,58.808,81.439)
O2': (49.417,59.922,81.495)
N1: (52.776,58.546,81.396)
N3: (54.410,58.648,79.680)
N4: (55.872,56.914,79.383)
C6: (53.242,57.322,81.786)
C5: (54.269,56.738,81.150)
O3': (48.375,57.652,82.374)
OP1: (51.436,53.888,85.329)
OP2: (50.129,54.470,83.190)
C4: (54.854,57.448,80.059)
O5': (51.586,56.151,84.280)
C3': (49.795,57.688,82.349)
C1': (51.631,59.172,82.072)
O4': (51.608,58.738,83.421)
C5': (50.536,57.004,84.711)
P: (51.345,54.599,84.027)
O2: (52.938,60.331,80.010)
C4': (50.328,58.113,83.709)
C2': (50.284,58.808,81.439)
O2': (49.417,59.922,81.495)
N1: (52.776,58.546,81.396)
N3: (54.410,58.648,79.680)
N4: (55.872,56.914,79.383)
C6: (53.242,57.322,81.786)
C5: (54.269,56.738,81.150)
O3': (48.375,57.652,82.374)
C4: (58.876,51.876,80.560)
N3: (58.151,52.946,80.062)
OP1: (55.400,48.503,84.449)
OP2: (56.473,49.970,86.245)
C2: (57.028,53.516,80.620)
C1': (55.399,53.497,82.423)
C3': (53.297,52.981,83.384)
O5': (54.736,50.880,84.709)
O4': (55.584,53.536,83.821)
C5': (54.520,52.087,85.436)
P: (55.292,49.589,85.445)
C4': (54.326,53.235,84.481)
C2': (54.156,52.649,82.170)
O2': (53.568,53.056,80.955)
N1: (56.602,52.933,81.797)
O4: (59.872,51.475,79.949)
O2: (56.448,54.467,80.112)
C6: (57.278,51.867,82.348)
C5: (58.370,51.332,81.784)
O3': (52.604,54.185,83.122)
N3: (58.151,52.946,80.062)
OP1: (55.400,48.503,84.449)
OP2: (56.473,49.970,86.245)
C2: (57.028,53.516,80.620)
C1': (55.399,53.497,82.423)
C3': (53.297,52.981,83.384)
O5': (54.736,50.880,84.709)
O4': (55.584,53.536,83.821)
C5': (54.520,52.087,85.436)
P: (55.292,49.589,85.445)
C4': (54.326,53.235,84.481)
C2': (54.156,52.649,82.170)
O2': (53.568,53.056,80.955)
N1: (56.602,52.933,81.797)
O4: (59.872,51.475,79.949)
O2: (56.448,54.467,80.112)
C6: (57.278,51.867,82.348)
C5: (58.370,51.332,81.784)
O3': (52.604,54.185,83.122)
Image (generated by PyMOL):