Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VC7:B57:B56
Extra
PDB:
ATOM 1 O3' U A 56 52.547 53.237 84.205 1.00102.65 O
ATOM 2 P C A 57 51.973 54.132 85.430 1.00105.04 P
ATOM 3 OP1 C A 57 52.913 54.171 86.591 1.00108.79 O
ATOM 4 OP2 C A 57 50.578 53.685 85.658 1.00 97.78 O
ATOM 5 O5' C A 57 51.897 55.608 84.802 1.00 99.60 O
ATOM 6 C5' C A 57 51.260 56.686 85.526 1.00 99.48 C
ATOM 7 C4' C A 57 51.044 57.925 84.652 1.00 94.85 C
ATOM 8 O4' C A 57 52.292 58.624 84.395 1.00 97.72 O
ATOM 9 C3' C A 57 50.407 57.720 83.281 1.00 87.10 C
ATOM 10 O3' C A 57 48.988 57.626 83.420 1.00 82.03 O
ATOM 11 C2' C A 57 50.815 59.007 82.553 1.00 87.38 C
ATOM 12 O2' C A 57 49.969 60.111 82.838 1.00 83.76 O
ATOM 13 C1' C A 57 52.213 59.280 83.138 1.00 92.82 C
ATOM 14 N1 C A 57 53.327 58.799 82.301 1.00 92.95 N
ATOM 15 C2 C A 57 53.508 59.350 81.027 1.00 92.45 C
ATOM 16 O2 C A 57 52.750 60.261 80.651 1.00 93.09 O
ATOM 17 N3 C A 57 54.508 58.880 80.239 1.00 94.07 N
ATOM 18 C4 C A 57 55.309 57.906 80.685 1.00 96.65 C
ATOM 19 N4 C A 57 56.273 57.459 79.873 1.00103.75 N
ATOM 20 C5 C A 57 55.158 57.344 81.986 1.00 93.67 C
ATOM 21 C6 C A 57 54.165 57.816 82.754 1.00 93.30 C
ATOM 22 P C A 58 48.113 56.820 82.332 1.00 78.21 P
ATOM 23 OP1 C A 58 46.694 57.235 82.515 1.00 75.08 O
ATOM 24 OP2 C A 58 48.470 55.378 82.366 1.00 78.59 O
ATOM 25 O5' C A 58 48.555 57.430 80.935 1.00 77.87 O
TER
ATOM 1 O3' C B 55 54.587 49.516 87.479 1.00 72.33 O
ATOM 2 P U B 56 55.764 49.749 86.416 1.00 78.20 P
ATOM 3 OP1 U B 56 55.689 48.595 85.476 1.00 85.96 O
ATOM 4 OP2 U B 56 57.017 50.004 87.165 1.00 83.34 O
ATOM 5 O5' U B 56 55.328 51.066 85.625 1.00 90.25 O
ATOM 6 C5' U B 56 55.019 52.294 86.294 1.00100.89 C
ATOM 7 C4' U B 56 54.855 53.395 85.263 1.00104.92 C
ATOM 8 O4' U B 56 56.150 53.709 84.691 1.00115.21 O
ATOM 9 C3' U B 56 53.958 52.961 84.097 1.00101.70 C
ATOM 10 O3' U B 56 52.547 53.237 84.205 1.00102.65 O
ATOM 11 C2' U B 56 54.567 53.647 82.872 1.00107.32 C
ATOM 12 O2' U B 56 53.864 54.736 82.334 1.00112.73 O
ATOM 13 C1' U B 56 55.980 54.043 83.333 1.00116.39 C
ATOM 14 N1 U B 56 57.008 53.367 82.534 1.00119.19 N
ATOM 15 C2 U B 56 57.500 54.051 81.433 1.00122.00 C
ATOM 16 O2 U B 56 57.159 55.193 81.152 1.00119.49 O
ATOM 17 N3 U B 56 58.406 53.351 80.677 1.00126.10 N
ATOM 18 C4 U B 56 58.869 52.071 80.908 1.00128.90 C
ATOM 19 O4 U B 56 59.676 51.567 80.119 1.00134.84 O
ATOM 20 C5 U B 56 58.332 51.442 82.084 1.00122.12 C
ATOM 21 C6 U B 56 57.444 52.100 82.841 1.00116.84 C
ATOM 22 P C B 57 51.973 54.132 85.430 1.00105.04 P
ATOM 23 OP1 C B 57 52.913 54.171 86.591 1.00108.79 O
ATOM 24 OP2 C B 57 50.578 53.685 85.658 1.00 97.78 O
ATOM 25 O5' C B 57 51.897 55.608 84.802 1.00 99.60 O
TER
ATOM 2 P C A 57 51.973 54.132 85.430 1.00105.04 P
ATOM 3 OP1 C A 57 52.913 54.171 86.591 1.00108.79 O
ATOM 4 OP2 C A 57 50.578 53.685 85.658 1.00 97.78 O
ATOM 5 O5' C A 57 51.897 55.608 84.802 1.00 99.60 O
ATOM 6 C5' C A 57 51.260 56.686 85.526 1.00 99.48 C
ATOM 7 C4' C A 57 51.044 57.925 84.652 1.00 94.85 C
ATOM 8 O4' C A 57 52.292 58.624 84.395 1.00 97.72 O
ATOM 9 C3' C A 57 50.407 57.720 83.281 1.00 87.10 C
ATOM 10 O3' C A 57 48.988 57.626 83.420 1.00 82.03 O
ATOM 11 C2' C A 57 50.815 59.007 82.553 1.00 87.38 C
ATOM 12 O2' C A 57 49.969 60.111 82.838 1.00 83.76 O
ATOM 13 C1' C A 57 52.213 59.280 83.138 1.00 92.82 C
ATOM 14 N1 C A 57 53.327 58.799 82.301 1.00 92.95 N
ATOM 15 C2 C A 57 53.508 59.350 81.027 1.00 92.45 C
ATOM 16 O2 C A 57 52.750 60.261 80.651 1.00 93.09 O
ATOM 17 N3 C A 57 54.508 58.880 80.239 1.00 94.07 N
ATOM 18 C4 C A 57 55.309 57.906 80.685 1.00 96.65 C
ATOM 19 N4 C A 57 56.273 57.459 79.873 1.00103.75 N
ATOM 20 C5 C A 57 55.158 57.344 81.986 1.00 93.67 C
ATOM 21 C6 C A 57 54.165 57.816 82.754 1.00 93.30 C
ATOM 22 P C A 58 48.113 56.820 82.332 1.00 78.21 P
ATOM 23 OP1 C A 58 46.694 57.235 82.515 1.00 75.08 O
ATOM 24 OP2 C A 58 48.470 55.378 82.366 1.00 78.59 O
ATOM 25 O5' C A 58 48.555 57.430 80.935 1.00 77.87 O
TER
ATOM 1 O3' C B 55 54.587 49.516 87.479 1.00 72.33 O
ATOM 2 P U B 56 55.764 49.749 86.416 1.00 78.20 P
ATOM 3 OP1 U B 56 55.689 48.595 85.476 1.00 85.96 O
ATOM 4 OP2 U B 56 57.017 50.004 87.165 1.00 83.34 O
ATOM 5 O5' U B 56 55.328 51.066 85.625 1.00 90.25 O
ATOM 6 C5' U B 56 55.019 52.294 86.294 1.00100.89 C
ATOM 7 C4' U B 56 54.855 53.395 85.263 1.00104.92 C
ATOM 8 O4' U B 56 56.150 53.709 84.691 1.00115.21 O
ATOM 9 C3' U B 56 53.958 52.961 84.097 1.00101.70 C
ATOM 10 O3' U B 56 52.547 53.237 84.205 1.00102.65 O
ATOM 11 C2' U B 56 54.567 53.647 82.872 1.00107.32 C
ATOM 12 O2' U B 56 53.864 54.736 82.334 1.00112.73 O
ATOM 13 C1' U B 56 55.980 54.043 83.333 1.00116.39 C
ATOM 14 N1 U B 56 57.008 53.367 82.534 1.00119.19 N
ATOM 15 C2 U B 56 57.500 54.051 81.433 1.00122.00 C
ATOM 16 O2 U B 56 57.159 55.193 81.152 1.00119.49 O
ATOM 17 N3 U B 56 58.406 53.351 80.677 1.00126.10 N
ATOM 18 C4 U B 56 58.869 52.071 80.908 1.00128.90 C
ATOM 19 O4 U B 56 59.676 51.567 80.119 1.00134.84 O
ATOM 20 C5 U B 56 58.332 51.442 82.084 1.00122.12 C
ATOM 21 C6 U B 56 57.444 52.100 82.841 1.00116.84 C
ATOM 22 P C B 57 51.973 54.132 85.430 1.00105.04 P
ATOM 23 OP1 C B 57 52.913 54.171 86.591 1.00108.79 O
ATOM 24 OP2 C B 57 50.578 53.685 85.658 1.00 97.78 O
ATOM 25 O5' C B 57 51.897 55.608 84.802 1.00 99.60 O
TER
Atoms:
C2: (53.508,59.350,81.027)
OP1: (52.913,54.171,86.591)
OP2: (50.578,53.685,85.658)
C4: (55.309,57.906,80.685)
O5': (51.897,55.608,84.802)
C3': (50.407,57.720,83.281)
C1': (52.213,59.280,83.138)
O4': (52.292,58.624,84.395)
C5': (51.260,56.686,85.526)
P: (51.973,54.132,85.430)
O2: (52.750,60.261,80.651)
C4': (51.044,57.925,84.652)
C2': (50.815,59.007,82.553)
O2': (49.969,60.111,82.838)
N1: (53.327,58.799,82.301)
N3: (54.508,58.880,80.239)
N4: (56.273,57.459,79.873)
C6: (54.165,57.816,82.754)
C5: (55.158,57.344,81.986)
O3': (48.988,57.626,83.420)
OP1: (52.913,54.171,86.591)
OP2: (50.578,53.685,85.658)
C4: (55.309,57.906,80.685)
O5': (51.897,55.608,84.802)
C3': (50.407,57.720,83.281)
C1': (52.213,59.280,83.138)
O4': (52.292,58.624,84.395)
C5': (51.260,56.686,85.526)
P: (51.973,54.132,85.430)
O2: (52.750,60.261,80.651)
C4': (51.044,57.925,84.652)
C2': (50.815,59.007,82.553)
O2': (49.969,60.111,82.838)
N1: (53.327,58.799,82.301)
N3: (54.508,58.880,80.239)
N4: (56.273,57.459,79.873)
C6: (54.165,57.816,82.754)
C5: (55.158,57.344,81.986)
O3': (48.988,57.626,83.420)
C4: (58.869,52.071,80.908)
N3: (58.406,53.351,80.677)
OP1: (55.689,48.595,85.476)
OP2: (57.017,50.004,87.165)
C2: (57.500,54.051,81.433)
C1': (55.980,54.043,83.333)
C3': (53.958,52.961,84.097)
O5': (55.328,51.066,85.625)
O4': (56.150,53.709,84.691)
C5': (55.019,52.294,86.294)
P: (55.764,49.749,86.416)
C4': (54.855,53.395,85.263)
C2': (54.567,53.647,82.872)
O2': (53.864,54.736,82.334)
N1: (57.008,53.367,82.534)
O4: (59.676,51.567,80.119)
O2: (57.159,55.193,81.152)
C6: (57.444,52.100,82.841)
C5: (58.332,51.442,82.084)
O3': (52.547,53.237,84.205)
N3: (58.406,53.351,80.677)
OP1: (55.689,48.595,85.476)
OP2: (57.017,50.004,87.165)
C2: (57.500,54.051,81.433)
C1': (55.980,54.043,83.333)
C3': (53.958,52.961,84.097)
O5': (55.328,51.066,85.625)
O4': (56.150,53.709,84.691)
C5': (55.019,52.294,86.294)
P: (55.764,49.749,86.416)
C4': (54.855,53.395,85.263)
C2': (54.567,53.647,82.872)
O2': (53.864,54.736,82.334)
N1: (57.008,53.367,82.534)
O4: (59.676,51.567,80.119)
O2: (57.159,55.193,81.152)
C6: (57.444,52.100,82.841)
C5: (58.332,51.442,82.084)
O3': (52.547,53.237,84.205)
Image (generated by PyMOL):