Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12040:12019
Extra
PDB:
ATOM 1 O3' A A2039 2.612 -38.949 111.700 1.00 64.99 O
ATOM 2 P A A2040 1.476 -38.608 110.627 1.00 52.09 P
ATOM 3 OP1 A A2040 0.213 -38.244 111.388 1.00 52.40 O
ATOM 4 OP2 A A2040 1.457 -39.750 109.692 1.00 52.05 O
ATOM 5 O5' A A2040 2.061 -37.301 109.897 1.00 51.63 O
ATOM 6 C5' A A2040 2.352 -36.125 110.641 1.00 51.59 C
ATOM 7 C4' A A2040 3.438 -35.327 109.991 1.00 51.17 C
ATOM 8 O4' A A2040 4.667 -36.104 109.946 1.00 51.11 O
ATOM 9 C3' A A2040 3.203 -34.958 108.546 1.00 50.81 C
ATOM 10 O3' A A2040 2.354 -33.844 108.394 1.00 50.75 O
ATOM 11 C2' A A2040 4.603 -34.693 108.058 1.00 50.47 C
ATOM 12 O2' A A2040 5.057 -33.445 108.562 1.00 50.36 O
ATOM 13 C1' A A2040 5.369 -35.811 108.757 1.00 50.69 C
ATOM 14 N9 A A2040 5.432 -37.020 107.902 1.00 50.66 N
ATOM 15 C8 A A2040 4.607 -38.132 107.836 1.00 50.92 C
ATOM 16 N7 A A2040 4.950 -38.997 106.901 1.00 50.80 N
ATOM 17 C5 A A2040 6.054 -38.420 106.274 1.00 50.43 C
ATOM 18 C6 A A2040 6.890 -38.822 105.198 1.00 50.15 C
ATOM 19 N6 A A2040 6.767 -39.926 104.495 1.00 50.20 N
ATOM 20 N1 A A2040 7.909 -38.031 104.849 1.00 49.83 N
ATOM 21 C2 A A2040 8.081 -36.889 105.545 1.00 49.78 C
ATOM 22 N3 A A2040 7.367 -36.376 106.550 1.00 50.01 N
ATOM 23 C4 A A2040 6.351 -37.196 106.880 1.00 50.33 C
ATOM 24 P G A2041 1.347 -33.773 107.150 1.00 61.10 P
ATOM 25 OP1 G A2041 0.690 -32.457 107.217 1.00 61.05 O
ATOM 26 OP2 G A2041 0.513 -34.995 107.209 1.00 61.40 O
ATOM 27 O5' G A2041 2.301 -33.848 105.875 1.00 60.69 O
TER
ATOM 1 O3' U B2018 5.980 -46.555 98.215 1.00 72.83 O
ATOM 2 P C B2019 6.847 -47.512 99.180 1.00 93.21 P
ATOM 3 OP1 C B2019 8.011 -47.966 98.395 1.00 93.04 O
ATOM 4 OP2 C B2019 5.917 -48.525 99.757 1.00 93.66 O
ATOM 5 O5' C B2019 7.331 -46.528 100.324 1.00 93.15 O
ATOM 6 C5' C B2019 8.246 -45.499 100.036 1.00 92.77 C
ATOM 7 C4' C B2019 8.137 -44.387 101.032 1.00 92.74 C
ATOM 8 O4' C B2019 6.745 -44.039 101.213 1.00 92.87 O
ATOM 9 C3' C B2019 8.618 -44.700 102.438 1.00 93.01 C
ATOM 10 O3' C B2019 10.018 -44.605 102.571 1.00 92.86 O
ATOM 11 C2' C B2019 7.873 -43.669 103.261 1.00 93.06 C
ATOM 12 O2' C B2019 8.468 -42.384 103.095 1.00 92.71 O
ATOM 13 C1' C B2019 6.518 -43.670 102.554 1.00 93.09 C
ATOM 14 N1 C B2019 5.585 -44.646 103.147 1.00 93.51 N
ATOM 15 C2 C B2019 4.825 -44.245 104.259 1.00 93.76 C
ATOM 16 O2 C B2019 4.960 -43.077 104.705 1.00 93.61 O
ATOM 17 N3 C B2019 3.955 -45.143 104.802 1.00 94.16 N
ATOM 18 C4 C B2019 3.832 -46.364 104.265 1.00 94.32 C
ATOM 19 N4 C B2019 2.955 -47.208 104.825 1.00 94.73 N
ATOM 20 C5 C B2019 4.599 -46.777 103.127 1.00 94.08 C
ATOM 21 C6 C B2019 5.455 -45.900 102.603 1.00 93.68 C
ATOM 22 P A B2020 10.896 -45.909 102.906 1.00 63.37 P
ATOM 23 OP1 A B2020 11.669 -46.217 101.651 1.00 63.11 O
ATOM 24 OP2 A B2020 9.991 -46.949 103.489 1.00 63.81 O
ATOM 25 O5' A B2020 11.883 -45.370 104.024 1.00 63.39 O
TER
ATOM 2 P A A2040 1.476 -38.608 110.627 1.00 52.09 P
ATOM 3 OP1 A A2040 0.213 -38.244 111.388 1.00 52.40 O
ATOM 4 OP2 A A2040 1.457 -39.750 109.692 1.00 52.05 O
ATOM 5 O5' A A2040 2.061 -37.301 109.897 1.00 51.63 O
ATOM 6 C5' A A2040 2.352 -36.125 110.641 1.00 51.59 C
ATOM 7 C4' A A2040 3.438 -35.327 109.991 1.00 51.17 C
ATOM 8 O4' A A2040 4.667 -36.104 109.946 1.00 51.11 O
ATOM 9 C3' A A2040 3.203 -34.958 108.546 1.00 50.81 C
ATOM 10 O3' A A2040 2.354 -33.844 108.394 1.00 50.75 O
ATOM 11 C2' A A2040 4.603 -34.693 108.058 1.00 50.47 C
ATOM 12 O2' A A2040 5.057 -33.445 108.562 1.00 50.36 O
ATOM 13 C1' A A2040 5.369 -35.811 108.757 1.00 50.69 C
ATOM 14 N9 A A2040 5.432 -37.020 107.902 1.00 50.66 N
ATOM 15 C8 A A2040 4.607 -38.132 107.836 1.00 50.92 C
ATOM 16 N7 A A2040 4.950 -38.997 106.901 1.00 50.80 N
ATOM 17 C5 A A2040 6.054 -38.420 106.274 1.00 50.43 C
ATOM 18 C6 A A2040 6.890 -38.822 105.198 1.00 50.15 C
ATOM 19 N6 A A2040 6.767 -39.926 104.495 1.00 50.20 N
ATOM 20 N1 A A2040 7.909 -38.031 104.849 1.00 49.83 N
ATOM 21 C2 A A2040 8.081 -36.889 105.545 1.00 49.78 C
ATOM 22 N3 A A2040 7.367 -36.376 106.550 1.00 50.01 N
ATOM 23 C4 A A2040 6.351 -37.196 106.880 1.00 50.33 C
ATOM 24 P G A2041 1.347 -33.773 107.150 1.00 61.10 P
ATOM 25 OP1 G A2041 0.690 -32.457 107.217 1.00 61.05 O
ATOM 26 OP2 G A2041 0.513 -34.995 107.209 1.00 61.40 O
ATOM 27 O5' G A2041 2.301 -33.848 105.875 1.00 60.69 O
TER
ATOM 1 O3' U B2018 5.980 -46.555 98.215 1.00 72.83 O
ATOM 2 P C B2019 6.847 -47.512 99.180 1.00 93.21 P
ATOM 3 OP1 C B2019 8.011 -47.966 98.395 1.00 93.04 O
ATOM 4 OP2 C B2019 5.917 -48.525 99.757 1.00 93.66 O
ATOM 5 O5' C B2019 7.331 -46.528 100.324 1.00 93.15 O
ATOM 6 C5' C B2019 8.246 -45.499 100.036 1.00 92.77 C
ATOM 7 C4' C B2019 8.137 -44.387 101.032 1.00 92.74 C
ATOM 8 O4' C B2019 6.745 -44.039 101.213 1.00 92.87 O
ATOM 9 C3' C B2019 8.618 -44.700 102.438 1.00 93.01 C
ATOM 10 O3' C B2019 10.018 -44.605 102.571 1.00 92.86 O
ATOM 11 C2' C B2019 7.873 -43.669 103.261 1.00 93.06 C
ATOM 12 O2' C B2019 8.468 -42.384 103.095 1.00 92.71 O
ATOM 13 C1' C B2019 6.518 -43.670 102.554 1.00 93.09 C
ATOM 14 N1 C B2019 5.585 -44.646 103.147 1.00 93.51 N
ATOM 15 C2 C B2019 4.825 -44.245 104.259 1.00 93.76 C
ATOM 16 O2 C B2019 4.960 -43.077 104.705 1.00 93.61 O
ATOM 17 N3 C B2019 3.955 -45.143 104.802 1.00 94.16 N
ATOM 18 C4 C B2019 3.832 -46.364 104.265 1.00 94.32 C
ATOM 19 N4 C B2019 2.955 -47.208 104.825 1.00 94.73 N
ATOM 20 C5 C B2019 4.599 -46.777 103.127 1.00 94.08 C
ATOM 21 C6 C B2019 5.455 -45.900 102.603 1.00 93.68 C
ATOM 22 P A B2020 10.896 -45.909 102.906 1.00 63.37 P
ATOM 23 OP1 A B2020 11.669 -46.217 101.651 1.00 63.11 O
ATOM 24 OP2 A B2020 9.991 -46.949 103.489 1.00 63.81 O
ATOM 25 O5' A B2020 11.883 -45.370 104.024 1.00 63.39 O
TER
Atoms:
OP1: (0.213,-38.244,111.388)
OP2: (1.457,-39.750,109.692)
C3': (3.203,-34.958,108.546)
C1': (5.369,-35.811,108.757)
C5': (2.352,-36.125,110.641)
O4': (4.667,-36.104,109.946)
C8: (4.607,-38.132,107.836)
O2': (5.057,-33.445,108.562)
C6: (6.890,-38.822,105.198)
C5: (6.054,-38.420,106.274)
C4: (6.351,-37.196,106.880)
P: (1.476,-38.608,110.627)
C4': (3.438,-35.327,109.991)
C2': (4.603,-34.693,108.058)
C2: (8.081,-36.889,105.545)
N1: (7.909,-38.031,104.849)
N3: (7.367,-36.376,106.550)
N6: (6.767,-39.926,104.495)
N7: (4.950,-38.997,106.901)
N9: (5.432,-37.020,107.902)
O5': (2.061,-37.301,109.897)
O3': (2.354,-33.844,108.394)
OP2: (1.457,-39.750,109.692)
C3': (3.203,-34.958,108.546)
C1': (5.369,-35.811,108.757)
C5': (2.352,-36.125,110.641)
O4': (4.667,-36.104,109.946)
C8: (4.607,-38.132,107.836)
O2': (5.057,-33.445,108.562)
C6: (6.890,-38.822,105.198)
C5: (6.054,-38.420,106.274)
C4: (6.351,-37.196,106.880)
P: (1.476,-38.608,110.627)
C4': (3.438,-35.327,109.991)
C2': (4.603,-34.693,108.058)
C2: (8.081,-36.889,105.545)
N1: (7.909,-38.031,104.849)
N3: (7.367,-36.376,106.550)
N6: (6.767,-39.926,104.495)
N7: (4.950,-38.997,106.901)
N9: (5.432,-37.020,107.902)
O5': (2.061,-37.301,109.897)
O3': (2.354,-33.844,108.394)
C2: (4.825,-44.245,104.259)
OP1: (8.011,-47.966,98.395)
OP2: (5.917,-48.525,99.757)
C4: (3.832,-46.364,104.265)
O5': (7.331,-46.528,100.324)
C3': (8.618,-44.700,102.438)
C1': (6.518,-43.670,102.554)
O4': (6.745,-44.039,101.213)
C5': (8.246,-45.499,100.036)
P: (6.847,-47.512,99.180)
O2: (4.960,-43.077,104.705)
C4': (8.137,-44.387,101.032)
C2': (7.873,-43.669,103.261)
O2': (8.468,-42.384,103.095)
N1: (5.585,-44.646,103.147)
N3: (3.955,-45.143,104.802)
N4: (2.955,-47.208,104.825)
C6: (5.455,-45.900,102.603)
C5: (4.599,-46.777,103.127)
O3': (10.018,-44.605,102.571)
OP1: (8.011,-47.966,98.395)
OP2: (5.917,-48.525,99.757)
C4: (3.832,-46.364,104.265)
O5': (7.331,-46.528,100.324)
C3': (8.618,-44.700,102.438)
C1': (6.518,-43.670,102.554)
O4': (6.745,-44.039,101.213)
C5': (8.246,-45.499,100.036)
P: (6.847,-47.512,99.180)
O2: (4.960,-43.077,104.705)
C4': (8.137,-44.387,101.032)
C2': (7.873,-43.669,103.261)
O2': (8.468,-42.384,103.095)
N1: (5.585,-44.646,103.147)
N3: (3.955,-45.143,104.802)
N4: (2.955,-47.208,104.825)
C6: (5.455,-45.900,102.603)
C5: (4.599,-46.777,103.127)
O3': (10.018,-44.605,102.571)
Image (generated by PyMOL):