Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:X20:X19
Extra
PDB:
ATOM 1 O3' U A 19 9.982 5.196 25.693 1.00 31.51 O
ATOM 2 P C A 20 9.764 3.734 25.047 1.00 35.87 P
ATOM 3 OP1 C A 20 9.579 3.840 23.582 1.00 32.57 O
ATOM 4 OP2 C A 20 8.652 3.238 25.885 1.00 34.82 O
ATOM 5 O5' C A 20 11.118 2.977 25.417 1.00 29.16 O
ATOM 6 C5' C A 20 11.371 1.643 25.003 1.00 32.78 C
ATOM 7 C4' C A 20 12.010 0.864 26.116 1.00 33.93 C
ATOM 8 O4' C A 20 13.173 1.597 26.581 1.00 32.14 O
ATOM 9 C3' C A 20 11.158 0.666 27.360 1.00 34.33 C
ATOM 10 O3' C A 20 10.293 -0.458 27.259 1.00 35.80 O
ATOM 11 C2' C A 20 12.213 0.506 28.442 1.00 31.63 C
ATOM 12 O2' C A 20 12.724 -0.818 28.397 1.00 35.95 O
ATOM 13 C1' C A 20 13.307 1.472 27.978 1.00 31.22 C
ATOM 14 N1 C A 20 13.170 2.831 28.553 1.00 30.61 N
ATOM 15 C2 C A 20 13.344 3.001 29.923 1.00 30.05 C
ATOM 16 O2 C A 20 13.616 2.004 30.604 1.00 35.65 O
ATOM 17 N3 C A 20 13.209 4.227 30.472 1.00 31.71 N
ATOM 18 C4 C A 20 12.925 5.269 29.691 1.00 28.60 C
ATOM 19 N4 C A 20 12.804 6.459 30.267 1.00 29.19 N
ATOM 20 C5 C A 20 12.750 5.134 28.285 1.00 29.17 C
ATOM 21 C6 C A 20 12.872 3.904 27.765 1.00 30.19 C
ATOM 22 P C A 21 8.771 -0.487 27.802 1.00 37.14 P
ATOM 23 OP1 C A 21 8.338 -1.896 27.682 1.00 44.37 O
ATOM 24 OP2 C A 21 8.021 0.556 27.085 1.00 36.78 O
ATOM 25 O5' C A 21 8.870 -0.061 29.331 1.00 38.51 O
TER
ATOM 1 O3' C B 18 12.716 9.069 21.117 1.00 19.86 O
ATOM 2 P U B 19 11.213 8.646 21.487 1.00 23.78 P
ATOM 3 OP1 U B 19 10.941 7.486 20.601 1.00 25.08 O
ATOM 4 OP2 U B 19 10.307 9.821 21.446 1.00 22.82 O
ATOM 5 O5' U B 19 11.335 8.132 22.984 1.00 21.38 O
ATOM 6 C5' U B 19 12.118 6.988 23.290 1.00 23.62 C
ATOM 7 C4' U B 19 11.764 6.490 24.665 1.00 25.21 C
ATOM 8 O4' U B 19 12.247 7.458 25.642 1.00 26.50 O
ATOM 9 C3' U B 19 10.259 6.343 24.895 1.00 27.34 C
ATOM 10 O3' U B 19 9.982 5.196 25.693 1.00 31.51 O
ATOM 11 C2' U B 19 9.903 7.592 25.695 1.00 30.91 C
ATOM 12 O2' U B 19 8.780 7.425 26.537 1.00 32.17 O
ATOM 13 C1' U B 19 11.184 7.857 26.494 1.00 25.74 C
ATOM 14 N1 U B 19 11.168 9.289 26.905 1.00 26.30 N
ATOM 15 C2 U B 19 11.282 9.611 28.257 1.00 26.72 C
ATOM 16 O2 U B 19 11.465 8.782 29.127 1.00 27.64 O
ATOM 17 N3 U B 19 11.198 10.950 28.558 1.00 24.77 N
ATOM 18 C4 U B 19 10.983 11.992 27.666 1.00 27.39 C
ATOM 19 O4 U B 19 10.900 13.153 28.082 1.00 26.84 O
ATOM 20 C5 U B 19 10.853 11.586 26.297 1.00 23.01 C
ATOM 21 C6 U B 19 10.930 10.287 25.984 1.00 23.97 C
ATOM 22 P C B 20 9.764 3.734 25.047 1.00 35.87 P
ATOM 23 OP1 C B 20 9.579 3.840 23.582 1.00 32.57 O
ATOM 24 OP2 C B 20 8.652 3.238 25.885 1.00 34.82 O
ATOM 25 O5' C B 20 11.118 2.977 25.417 1.00 29.16 O
TER
ATOM 2 P C A 20 9.764 3.734 25.047 1.00 35.87 P
ATOM 3 OP1 C A 20 9.579 3.840 23.582 1.00 32.57 O
ATOM 4 OP2 C A 20 8.652 3.238 25.885 1.00 34.82 O
ATOM 5 O5' C A 20 11.118 2.977 25.417 1.00 29.16 O
ATOM 6 C5' C A 20 11.371 1.643 25.003 1.00 32.78 C
ATOM 7 C4' C A 20 12.010 0.864 26.116 1.00 33.93 C
ATOM 8 O4' C A 20 13.173 1.597 26.581 1.00 32.14 O
ATOM 9 C3' C A 20 11.158 0.666 27.360 1.00 34.33 C
ATOM 10 O3' C A 20 10.293 -0.458 27.259 1.00 35.80 O
ATOM 11 C2' C A 20 12.213 0.506 28.442 1.00 31.63 C
ATOM 12 O2' C A 20 12.724 -0.818 28.397 1.00 35.95 O
ATOM 13 C1' C A 20 13.307 1.472 27.978 1.00 31.22 C
ATOM 14 N1 C A 20 13.170 2.831 28.553 1.00 30.61 N
ATOM 15 C2 C A 20 13.344 3.001 29.923 1.00 30.05 C
ATOM 16 O2 C A 20 13.616 2.004 30.604 1.00 35.65 O
ATOM 17 N3 C A 20 13.209 4.227 30.472 1.00 31.71 N
ATOM 18 C4 C A 20 12.925 5.269 29.691 1.00 28.60 C
ATOM 19 N4 C A 20 12.804 6.459 30.267 1.00 29.19 N
ATOM 20 C5 C A 20 12.750 5.134 28.285 1.00 29.17 C
ATOM 21 C6 C A 20 12.872 3.904 27.765 1.00 30.19 C
ATOM 22 P C A 21 8.771 -0.487 27.802 1.00 37.14 P
ATOM 23 OP1 C A 21 8.338 -1.896 27.682 1.00 44.37 O
ATOM 24 OP2 C A 21 8.021 0.556 27.085 1.00 36.78 O
ATOM 25 O5' C A 21 8.870 -0.061 29.331 1.00 38.51 O
TER
ATOM 1 O3' C B 18 12.716 9.069 21.117 1.00 19.86 O
ATOM 2 P U B 19 11.213 8.646 21.487 1.00 23.78 P
ATOM 3 OP1 U B 19 10.941 7.486 20.601 1.00 25.08 O
ATOM 4 OP2 U B 19 10.307 9.821 21.446 1.00 22.82 O
ATOM 5 O5' U B 19 11.335 8.132 22.984 1.00 21.38 O
ATOM 6 C5' U B 19 12.118 6.988 23.290 1.00 23.62 C
ATOM 7 C4' U B 19 11.764 6.490 24.665 1.00 25.21 C
ATOM 8 O4' U B 19 12.247 7.458 25.642 1.00 26.50 O
ATOM 9 C3' U B 19 10.259 6.343 24.895 1.00 27.34 C
ATOM 10 O3' U B 19 9.982 5.196 25.693 1.00 31.51 O
ATOM 11 C2' U B 19 9.903 7.592 25.695 1.00 30.91 C
ATOM 12 O2' U B 19 8.780 7.425 26.537 1.00 32.17 O
ATOM 13 C1' U B 19 11.184 7.857 26.494 1.00 25.74 C
ATOM 14 N1 U B 19 11.168 9.289 26.905 1.00 26.30 N
ATOM 15 C2 U B 19 11.282 9.611 28.257 1.00 26.72 C
ATOM 16 O2 U B 19 11.465 8.782 29.127 1.00 27.64 O
ATOM 17 N3 U B 19 11.198 10.950 28.558 1.00 24.77 N
ATOM 18 C4 U B 19 10.983 11.992 27.666 1.00 27.39 C
ATOM 19 O4 U B 19 10.900 13.153 28.082 1.00 26.84 O
ATOM 20 C5 U B 19 10.853 11.586 26.297 1.00 23.01 C
ATOM 21 C6 U B 19 10.930 10.287 25.984 1.00 23.97 C
ATOM 22 P C B 20 9.764 3.734 25.047 1.00 35.87 P
ATOM 23 OP1 C B 20 9.579 3.840 23.582 1.00 32.57 O
ATOM 24 OP2 C B 20 8.652 3.238 25.885 1.00 34.82 O
ATOM 25 O5' C B 20 11.118 2.977 25.417 1.00 29.16 O
TER
Atoms:
C2: (13.344,3.001,29.923)
OP1: (9.579,3.840,23.582)
OP2: (8.652,3.238,25.885)
C4: (12.925,5.269,29.691)
O5': (11.118,2.977,25.417)
C3': (11.158,0.666,27.360)
C1': (13.307,1.472,27.978)
O4': (13.173,1.597,26.581)
C5': (11.371,1.643,25.003)
P: (9.764,3.734,25.047)
O2: (13.616,2.004,30.604)
C4': (12.010,0.864,26.116)
C2': (12.213,0.506,28.442)
O2': (12.724,-0.818,28.397)
N1: (13.170,2.831,28.553)
N3: (13.209,4.227,30.472)
N4: (12.804,6.459,30.267)
C6: (12.872,3.904,27.765)
C5: (12.750,5.134,28.285)
O3': (10.293,-0.458,27.259)
OP1: (9.579,3.840,23.582)
OP2: (8.652,3.238,25.885)
C4: (12.925,5.269,29.691)
O5': (11.118,2.977,25.417)
C3': (11.158,0.666,27.360)
C1': (13.307,1.472,27.978)
O4': (13.173,1.597,26.581)
C5': (11.371,1.643,25.003)
P: (9.764,3.734,25.047)
O2: (13.616,2.004,30.604)
C4': (12.010,0.864,26.116)
C2': (12.213,0.506,28.442)
O2': (12.724,-0.818,28.397)
N1: (13.170,2.831,28.553)
N3: (13.209,4.227,30.472)
N4: (12.804,6.459,30.267)
C6: (12.872,3.904,27.765)
C5: (12.750,5.134,28.285)
O3': (10.293,-0.458,27.259)
C4: (10.983,11.992,27.666)
N3: (11.198,10.950,28.558)
OP1: (10.941,7.486,20.601)
OP2: (10.307,9.821,21.446)
C2: (11.282,9.611,28.257)
C1': (11.184,7.857,26.494)
C3': (10.259,6.343,24.895)
O5': (11.335,8.132,22.984)
O4': (12.247,7.458,25.642)
C5': (12.118,6.988,23.290)
P: (11.213,8.646,21.487)
C4': (11.764,6.490,24.665)
C2': (9.903,7.592,25.695)
O2': (8.780,7.425,26.537)
N1: (11.168,9.289,26.905)
O4: (10.900,13.153,28.082)
O2: (11.465,8.782,29.127)
C6: (10.930,10.287,25.984)
C5: (10.853,11.586,26.297)
O3': (9.982,5.196,25.693)
N3: (11.198,10.950,28.558)
OP1: (10.941,7.486,20.601)
OP2: (10.307,9.821,21.446)
C2: (11.282,9.611,28.257)
C1': (11.184,7.857,26.494)
C3': (10.259,6.343,24.895)
O5': (11.335,8.132,22.984)
O4': (12.247,7.458,25.642)
C5': (12.118,6.988,23.290)
P: (11.213,8.646,21.487)
C4': (11.764,6.490,24.665)
C2': (9.903,7.592,25.695)
O2': (8.780,7.425,26.537)
N1: (11.168,9.289,26.905)
O4: (10.900,13.153,28.082)
O2: (11.465,8.782,29.127)
C6: (10.930,10.287,25.984)
C5: (10.853,11.586,26.297)
O3': (9.982,5.196,25.693)
Image (generated by PyMOL):