Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2X:A56:A25
Extra
PDB:
ATOM 1 O3' U A 55 9.984 -32.769 -3.567 1.00 37.68 O
ATOM 2 P A A 56 10.782 -31.473 -4.085 1.00 38.19 P
ATOM 3 OP1 A A 56 10.787 -31.508 -5.574 1.00 37.33 O
ATOM 4 OP2 A A 56 12.070 -31.400 -3.337 1.00 36.74 O
ATOM 5 O5' A A 56 9.895 -30.240 -3.594 1.00 37.43 O
ATOM 6 C5' A A 56 10.443 -28.905 -3.552 1.00 35.45 C
ATOM 7 C4' A A 56 9.407 -27.916 -3.061 1.00 33.17 C
ATOM 8 O4' A A 56 8.303 -27.857 -3.993 1.00 32.41 O
ATOM 9 C3' A A 56 8.776 -28.237 -1.719 1.00 32.29 C
ATOM 10 O3' A A 56 9.595 -27.721 -0.674 1.00 30.63 O
ATOM 11 C2' A A 56 7.418 -27.542 -1.805 1.00 32.23 C
ATOM 12 O2' A A 56 7.500 -26.158 -1.513 1.00 33.27 O
ATOM 13 C1' A A 56 7.089 -27.679 -3.292 1.00 31.04 C
ATOM 14 N9 A A 56 6.193 -28.772 -3.668 1.00 29.42 N
ATOM 15 C8 A A 56 6.533 -29.907 -4.361 1.00 28.06 C
ATOM 16 N7 A A 56 5.511 -30.678 -4.646 1.00 27.00 N
ATOM 17 C5 A A 56 4.427 -30.020 -4.083 1.00 26.44 C
ATOM 18 C6 A A 56 3.062 -30.324 -4.047 1.00 25.05 C
ATOM 19 N6 A A 56 2.533 -31.404 -4.621 1.00 25.24 N
ATOM 20 N1 A A 56 2.245 -29.471 -3.400 1.00 23.74 N
ATOM 21 C2 A A 56 2.775 -28.387 -2.832 1.00 25.51 C
ATOM 22 N3 A A 56 4.044 -27.984 -2.801 1.00 27.71 N
ATOM 23 C4 A A 56 4.832 -28.856 -3.456 1.00 28.30 C
ATOM 24 P A A 57 9.842 -28.601 0.648 1.00 30.01 P
ATOM 25 OP1 A A 57 10.700 -27.824 1.580 1.00 30.21 O
ATOM 26 OP2 A A 57 10.272 -29.957 0.215 1.00 30.37 O
ATOM 27 O5' A A 57 8.394 -28.702 1.297 1.00 28.79 O
TER
ATOM 1 O3' G B 24 -1.516 -32.385 -9.811 1.00 31.15 O
ATOM 2 P C B 25 -1.841 -33.869 -9.278 1.00 31.76 P
ATOM 3 OP1 C B 25 -1.142 -34.849 -10.157 1.00 32.02 O
ATOM 4 OP2 C B 25 -3.317 -33.973 -9.085 1.00 31.32 O
ATOM 5 O5' C B 25 -1.118 -33.915 -7.863 1.00 31.94 O
ATOM 6 C5' C B 25 0.302 -33.678 -7.765 1.00 33.19 C
ATOM 7 C4' C B 25 0.792 -33.993 -6.376 1.00 34.10 C
ATOM 8 O4' C B 25 0.329 -32.975 -5.452 1.00 33.96 O
ATOM 9 C3' C B 25 0.291 -35.303 -5.787 1.00 34.85 C
ATOM 10 O3' C B 25 1.049 -36.421 -6.219 1.00 35.89 O
ATOM 11 C2' C B 25 0.396 -35.053 -4.291 1.00 34.51 C
ATOM 12 O2' C B 25 1.718 -35.208 -3.811 1.00 34.36 O
ATOM 13 C1' C B 25 0.015 -33.576 -4.202 1.00 34.42 C
ATOM 14 N1 C B 25 -1.426 -33.390 -3.937 1.00 33.59 N
ATOM 15 C2 C B 25 -1.915 -33.627 -2.647 1.00 32.94 C
ATOM 16 O2 C B 25 -1.136 -34.012 -1.768 1.00 33.36 O
ATOM 17 N3 C B 25 -3.225 -33.432 -2.393 1.00 33.83 N
ATOM 18 C4 C B 25 -4.041 -33.034 -3.368 1.00 34.64 C
ATOM 19 N4 C B 25 -5.328 -32.854 -3.070 1.00 34.31 N
ATOM 20 C5 C B 25 -3.575 -32.802 -4.694 1.00 34.61 C
ATOM 21 C6 C B 25 -2.275 -32.987 -4.931 1.00 33.86 C
ATOM 22 P U B 26 0.305 -37.825 -6.482 1.00 36.27 P
ATOM 23 OP1 U B 26 1.273 -38.723 -7.156 1.00 37.35 O
ATOM 24 OP2 U B 26 -1.021 -37.559 -7.111 1.00 35.31 O
ATOM 25 O5' U B 26 0.030 -38.381 -5.019 1.00 36.38 O
TER
ATOM 2 P A A 56 10.782 -31.473 -4.085 1.00 38.19 P
ATOM 3 OP1 A A 56 10.787 -31.508 -5.574 1.00 37.33 O
ATOM 4 OP2 A A 56 12.070 -31.400 -3.337 1.00 36.74 O
ATOM 5 O5' A A 56 9.895 -30.240 -3.594 1.00 37.43 O
ATOM 6 C5' A A 56 10.443 -28.905 -3.552 1.00 35.45 C
ATOM 7 C4' A A 56 9.407 -27.916 -3.061 1.00 33.17 C
ATOM 8 O4' A A 56 8.303 -27.857 -3.993 1.00 32.41 O
ATOM 9 C3' A A 56 8.776 -28.237 -1.719 1.00 32.29 C
ATOM 10 O3' A A 56 9.595 -27.721 -0.674 1.00 30.63 O
ATOM 11 C2' A A 56 7.418 -27.542 -1.805 1.00 32.23 C
ATOM 12 O2' A A 56 7.500 -26.158 -1.513 1.00 33.27 O
ATOM 13 C1' A A 56 7.089 -27.679 -3.292 1.00 31.04 C
ATOM 14 N9 A A 56 6.193 -28.772 -3.668 1.00 29.42 N
ATOM 15 C8 A A 56 6.533 -29.907 -4.361 1.00 28.06 C
ATOM 16 N7 A A 56 5.511 -30.678 -4.646 1.00 27.00 N
ATOM 17 C5 A A 56 4.427 -30.020 -4.083 1.00 26.44 C
ATOM 18 C6 A A 56 3.062 -30.324 -4.047 1.00 25.05 C
ATOM 19 N6 A A 56 2.533 -31.404 -4.621 1.00 25.24 N
ATOM 20 N1 A A 56 2.245 -29.471 -3.400 1.00 23.74 N
ATOM 21 C2 A A 56 2.775 -28.387 -2.832 1.00 25.51 C
ATOM 22 N3 A A 56 4.044 -27.984 -2.801 1.00 27.71 N
ATOM 23 C4 A A 56 4.832 -28.856 -3.456 1.00 28.30 C
ATOM 24 P A A 57 9.842 -28.601 0.648 1.00 30.01 P
ATOM 25 OP1 A A 57 10.700 -27.824 1.580 1.00 30.21 O
ATOM 26 OP2 A A 57 10.272 -29.957 0.215 1.00 30.37 O
ATOM 27 O5' A A 57 8.394 -28.702 1.297 1.00 28.79 O
TER
ATOM 1 O3' G B 24 -1.516 -32.385 -9.811 1.00 31.15 O
ATOM 2 P C B 25 -1.841 -33.869 -9.278 1.00 31.76 P
ATOM 3 OP1 C B 25 -1.142 -34.849 -10.157 1.00 32.02 O
ATOM 4 OP2 C B 25 -3.317 -33.973 -9.085 1.00 31.32 O
ATOM 5 O5' C B 25 -1.118 -33.915 -7.863 1.00 31.94 O
ATOM 6 C5' C B 25 0.302 -33.678 -7.765 1.00 33.19 C
ATOM 7 C4' C B 25 0.792 -33.993 -6.376 1.00 34.10 C
ATOM 8 O4' C B 25 0.329 -32.975 -5.452 1.00 33.96 O
ATOM 9 C3' C B 25 0.291 -35.303 -5.787 1.00 34.85 C
ATOM 10 O3' C B 25 1.049 -36.421 -6.219 1.00 35.89 O
ATOM 11 C2' C B 25 0.396 -35.053 -4.291 1.00 34.51 C
ATOM 12 O2' C B 25 1.718 -35.208 -3.811 1.00 34.36 O
ATOM 13 C1' C B 25 0.015 -33.576 -4.202 1.00 34.42 C
ATOM 14 N1 C B 25 -1.426 -33.390 -3.937 1.00 33.59 N
ATOM 15 C2 C B 25 -1.915 -33.627 -2.647 1.00 32.94 C
ATOM 16 O2 C B 25 -1.136 -34.012 -1.768 1.00 33.36 O
ATOM 17 N3 C B 25 -3.225 -33.432 -2.393 1.00 33.83 N
ATOM 18 C4 C B 25 -4.041 -33.034 -3.368 1.00 34.64 C
ATOM 19 N4 C B 25 -5.328 -32.854 -3.070 1.00 34.31 N
ATOM 20 C5 C B 25 -3.575 -32.802 -4.694 1.00 34.61 C
ATOM 21 C6 C B 25 -2.275 -32.987 -4.931 1.00 33.86 C
ATOM 22 P U B 26 0.305 -37.825 -6.482 1.00 36.27 P
ATOM 23 OP1 U B 26 1.273 -38.723 -7.156 1.00 37.35 O
ATOM 24 OP2 U B 26 -1.021 -37.559 -7.111 1.00 35.31 O
ATOM 25 O5' U B 26 0.030 -38.381 -5.019 1.00 36.38 O
TER
Atoms:
OP1: (10.787,-31.508,-5.574)
OP2: (12.070,-31.400,-3.337)
C3': (8.776,-28.237,-1.719)
C1': (7.089,-27.679,-3.292)
C5': (10.443,-28.905,-3.552)
O4': (8.303,-27.857,-3.993)
C8: (6.533,-29.907,-4.361)
O2': (7.500,-26.158,-1.513)
C6: (3.062,-30.324,-4.047)
C5: (4.427,-30.020,-4.083)
C4: (4.832,-28.856,-3.456)
P: (10.782,-31.473,-4.085)
C4': (9.407,-27.916,-3.061)
C2': (7.418,-27.542,-1.805)
C2: (2.775,-28.387,-2.832)
N1: (2.245,-29.471,-3.400)
N3: (4.044,-27.984,-2.801)
N6: (2.533,-31.404,-4.621)
N7: (5.511,-30.678,-4.646)
N9: (6.193,-28.772,-3.668)
O5': (9.895,-30.240,-3.594)
O3': (9.595,-27.721,-0.674)
OP2: (12.070,-31.400,-3.337)
C3': (8.776,-28.237,-1.719)
C1': (7.089,-27.679,-3.292)
C5': (10.443,-28.905,-3.552)
O4': (8.303,-27.857,-3.993)
C8: (6.533,-29.907,-4.361)
O2': (7.500,-26.158,-1.513)
C6: (3.062,-30.324,-4.047)
C5: (4.427,-30.020,-4.083)
C4: (4.832,-28.856,-3.456)
P: (10.782,-31.473,-4.085)
C4': (9.407,-27.916,-3.061)
C2': (7.418,-27.542,-1.805)
C2: (2.775,-28.387,-2.832)
N1: (2.245,-29.471,-3.400)
N3: (4.044,-27.984,-2.801)
N6: (2.533,-31.404,-4.621)
N7: (5.511,-30.678,-4.646)
N9: (6.193,-28.772,-3.668)
O5': (9.895,-30.240,-3.594)
O3': (9.595,-27.721,-0.674)
C2: (-1.915,-33.627,-2.647)
OP1: (-1.142,-34.849,-10.157)
OP2: (-3.317,-33.973,-9.085)
C4: (-4.041,-33.034,-3.368)
O5': (-1.118,-33.915,-7.863)
C3': (0.291,-35.303,-5.787)
C1': (0.015,-33.576,-4.202)
O4': (0.329,-32.975,-5.452)
C5': (0.302,-33.678,-7.765)
P: (-1.841,-33.869,-9.278)
O2: (-1.136,-34.012,-1.768)
C4': (0.792,-33.993,-6.376)
C2': (0.396,-35.053,-4.291)
O2': (1.718,-35.208,-3.811)
N1: (-1.426,-33.390,-3.937)
N3: (-3.225,-33.432,-2.393)
N4: (-5.328,-32.854,-3.070)
C6: (-2.275,-32.987,-4.931)
C5: (-3.575,-32.802,-4.694)
O3': (1.049,-36.421,-6.219)
OP1: (-1.142,-34.849,-10.157)
OP2: (-3.317,-33.973,-9.085)
C4: (-4.041,-33.034,-3.368)
O5': (-1.118,-33.915,-7.863)
C3': (0.291,-35.303,-5.787)
C1': (0.015,-33.576,-4.202)
O4': (0.329,-32.975,-5.452)
C5': (0.302,-33.678,-7.765)
P: (-1.841,-33.869,-9.278)
O2: (-1.136,-34.012,-1.768)
C4': (0.792,-33.993,-6.376)
C2': (0.396,-35.053,-4.291)
O2': (1.718,-35.208,-3.811)
N1: (-1.426,-33.390,-3.937)
N3: (-3.225,-33.432,-2.393)
N4: (-5.328,-32.854,-3.070)
C6: (-2.275,-32.987,-4.931)
C5: (-3.575,-32.802,-4.694)
O3': (1.049,-36.421,-6.219)
Image (generated by PyMOL):