Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD5:B6:A3
Extra
PDB:
ATOM 1 O3' C A 5 -11.891 13.234 36.649 1.00 35.11 O
ATOM 2 P A A 6 -12.857 14.502 36.812 1.00 37.56 P
ATOM 3 OP1 A A 6 -12.492 15.188 38.083 1.00 43.74 O
ATOM 4 OP2 A A 6 -14.282 14.161 36.524 1.00 44.66 O
ATOM 5 O5' A A 6 -12.451 15.478 35.586 1.00 37.32 O
ATOM 6 C5' A A 6 -13.500 15.970 34.716 1.00 34.02 C
ATOM 7 C4' A A 6 -12.830 16.554 33.477 1.00 28.80 C
ATOM 8 O4' A A 6 -12.549 15.472 32.546 1.00 24.85 O
ATOM 9 C3' A A 6 -13.787 17.501 32.720 1.00 26.62 C
ATOM 10 O3' A A 6 -13.569 18.846 33.205 1.00 26.60 O
ATOM 11 C2' A A 6 -13.233 17.351 31.301 1.00 24.34 C
ATOM 12 O2' A A 6 -12.033 18.111 31.137 1.00 26.74 O
ATOM 13 C1' A A 6 -12.954 15.852 31.230 1.00 23.14 C
ATOM 14 N9 A A 6 -14.070 15.014 30.792 1.00 22.07 N
ATOM 15 C8 A A 6 -14.673 13.997 31.505 1.00 22.92 C
ATOM 16 N7 A A 6 -15.638 13.403 30.817 1.00 23.60 N
ATOM 17 C5 A A 6 -15.680 14.057 29.589 1.00 20.52 C
ATOM 18 C6 A A 6 -16.496 13.879 28.452 1.00 21.96 C
ATOM 19 N6 A A 6 -17.471 12.949 28.326 1.00 20.63 N
ATOM 20 N1 A A 6 -16.263 14.687 27.390 1.00 21.40 N
ATOM 21 C2 A A 6 -15.283 15.607 27.488 1.00 22.17 C
ATOM 22 N3 A A 6 -14.450 15.850 28.506 1.00 22.44 N
ATOM 23 C4 A A 6 -14.709 15.033 29.560 1.00 21.90 C
ATOM 24 P G A 7 -14.839 19.786 33.518 1.00 25.92 P
ATOM 25 OP1 G A 7 -14.352 21.126 33.961 1.00 30.36 O
ATOM 26 OP2 G A 7 -15.755 19.066 34.451 1.00 27.53 O
ATOM 27 O5' G A 7 -15.574 19.937 32.112 1.00 24.79 O
TER
ATOM 1 O3' U B 2 -25.982 9.319 27.141 1.00 26.72 O
ATOM 2 P C B 3 -25.135 8.071 26.564 1.00 27.37 P
ATOM 3 OP1 C B 3 -25.738 7.740 25.268 1.00 29.45 O
ATOM 4 OP2 C B 3 -25.018 7.019 27.620 1.00 29.62 O
ATOM 5 O5' C B 3 -23.637 8.638 26.384 1.00 26.40 O
ATOM 6 C5' C B 3 -23.280 9.720 25.500 1.00 28.36 C
ATOM 7 C4' C B 3 -21.905 10.293 25.789 1.00 25.28 C
ATOM 8 O4' C B 3 -21.902 10.883 27.136 1.00 24.00 O
ATOM 9 C3' C B 3 -20.730 9.304 25.809 1.00 24.21 C
ATOM 10 O3' C B 3 -20.229 9.125 24.493 1.00 26.49 O
ATOM 11 C2' C B 3 -19.717 10.047 26.689 1.00 24.10 C
ATOM 12 O2' C B 3 -19.117 11.093 25.930 1.00 24.05 O
ATOM 13 C1' C B 3 -20.646 10.656 27.758 1.00 23.25 C
ATOM 14 N1 C B 3 -20.807 9.806 28.955 1.00 25.18 N
ATOM 15 C2 C B 3 -19.814 9.829 29.945 1.00 25.56 C
ATOM 16 O2 C B 3 -18.834 10.560 29.744 1.00 27.07 O
ATOM 17 N3 C B 3 -19.895 9.105 31.090 1.00 25.76 N
ATOM 18 C4 C B 3 -20.952 8.292 31.238 1.00 26.70 C
ATOM 19 N4 C B 3 -20.996 7.539 32.373 1.00 28.22 N
ATOM 20 C5 C B 3 -21.994 8.225 30.267 1.00 23.84 C
ATOM 21 C6 C B 3 -21.895 8.976 29.151 1.00 24.82 C
ATOM 22 P A B 4 -19.304 7.865 24.116 1.00 33.10 P
ATOM 23 OP1 A B 4 -19.199 7.759 22.623 1.00 37.91 O
ATOM 24 OP2 A B 4 -19.732 6.690 24.894 1.00 40.26 O
ATOM 25 O5' A B 4 -17.857 8.387 24.605 1.00 32.54 O
TER
ATOM 2 P A A 6 -12.857 14.502 36.812 1.00 37.56 P
ATOM 3 OP1 A A 6 -12.492 15.188 38.083 1.00 43.74 O
ATOM 4 OP2 A A 6 -14.282 14.161 36.524 1.00 44.66 O
ATOM 5 O5' A A 6 -12.451 15.478 35.586 1.00 37.32 O
ATOM 6 C5' A A 6 -13.500 15.970 34.716 1.00 34.02 C
ATOM 7 C4' A A 6 -12.830 16.554 33.477 1.00 28.80 C
ATOM 8 O4' A A 6 -12.549 15.472 32.546 1.00 24.85 O
ATOM 9 C3' A A 6 -13.787 17.501 32.720 1.00 26.62 C
ATOM 10 O3' A A 6 -13.569 18.846 33.205 1.00 26.60 O
ATOM 11 C2' A A 6 -13.233 17.351 31.301 1.00 24.34 C
ATOM 12 O2' A A 6 -12.033 18.111 31.137 1.00 26.74 O
ATOM 13 C1' A A 6 -12.954 15.852 31.230 1.00 23.14 C
ATOM 14 N9 A A 6 -14.070 15.014 30.792 1.00 22.07 N
ATOM 15 C8 A A 6 -14.673 13.997 31.505 1.00 22.92 C
ATOM 16 N7 A A 6 -15.638 13.403 30.817 1.00 23.60 N
ATOM 17 C5 A A 6 -15.680 14.057 29.589 1.00 20.52 C
ATOM 18 C6 A A 6 -16.496 13.879 28.452 1.00 21.96 C
ATOM 19 N6 A A 6 -17.471 12.949 28.326 1.00 20.63 N
ATOM 20 N1 A A 6 -16.263 14.687 27.390 1.00 21.40 N
ATOM 21 C2 A A 6 -15.283 15.607 27.488 1.00 22.17 C
ATOM 22 N3 A A 6 -14.450 15.850 28.506 1.00 22.44 N
ATOM 23 C4 A A 6 -14.709 15.033 29.560 1.00 21.90 C
ATOM 24 P G A 7 -14.839 19.786 33.518 1.00 25.92 P
ATOM 25 OP1 G A 7 -14.352 21.126 33.961 1.00 30.36 O
ATOM 26 OP2 G A 7 -15.755 19.066 34.451 1.00 27.53 O
ATOM 27 O5' G A 7 -15.574 19.937 32.112 1.00 24.79 O
TER
ATOM 1 O3' U B 2 -25.982 9.319 27.141 1.00 26.72 O
ATOM 2 P C B 3 -25.135 8.071 26.564 1.00 27.37 P
ATOM 3 OP1 C B 3 -25.738 7.740 25.268 1.00 29.45 O
ATOM 4 OP2 C B 3 -25.018 7.019 27.620 1.00 29.62 O
ATOM 5 O5' C B 3 -23.637 8.638 26.384 1.00 26.40 O
ATOM 6 C5' C B 3 -23.280 9.720 25.500 1.00 28.36 C
ATOM 7 C4' C B 3 -21.905 10.293 25.789 1.00 25.28 C
ATOM 8 O4' C B 3 -21.902 10.883 27.136 1.00 24.00 O
ATOM 9 C3' C B 3 -20.730 9.304 25.809 1.00 24.21 C
ATOM 10 O3' C B 3 -20.229 9.125 24.493 1.00 26.49 O
ATOM 11 C2' C B 3 -19.717 10.047 26.689 1.00 24.10 C
ATOM 12 O2' C B 3 -19.117 11.093 25.930 1.00 24.05 O
ATOM 13 C1' C B 3 -20.646 10.656 27.758 1.00 23.25 C
ATOM 14 N1 C B 3 -20.807 9.806 28.955 1.00 25.18 N
ATOM 15 C2 C B 3 -19.814 9.829 29.945 1.00 25.56 C
ATOM 16 O2 C B 3 -18.834 10.560 29.744 1.00 27.07 O
ATOM 17 N3 C B 3 -19.895 9.105 31.090 1.00 25.76 N
ATOM 18 C4 C B 3 -20.952 8.292 31.238 1.00 26.70 C
ATOM 19 N4 C B 3 -20.996 7.539 32.373 1.00 28.22 N
ATOM 20 C5 C B 3 -21.994 8.225 30.267 1.00 23.84 C
ATOM 21 C6 C B 3 -21.895 8.976 29.151 1.00 24.82 C
ATOM 22 P A B 4 -19.304 7.865 24.116 1.00 33.10 P
ATOM 23 OP1 A B 4 -19.199 7.759 22.623 1.00 37.91 O
ATOM 24 OP2 A B 4 -19.732 6.690 24.894 1.00 40.26 O
ATOM 25 O5' A B 4 -17.857 8.387 24.605 1.00 32.54 O
TER
Atoms:
OP1: (-12.492,15.188,38.083)
OP2: (-14.282,14.161,36.524)
C3': (-13.787,17.501,32.720)
C1': (-12.954,15.852,31.230)
C5': (-13.500,15.970,34.716)
O4': (-12.549,15.472,32.546)
C8: (-14.673,13.997,31.505)
O2': (-12.033,18.111,31.137)
C6: (-16.496,13.879,28.452)
C5: (-15.680,14.057,29.589)
C4: (-14.709,15.033,29.560)
P: (-12.857,14.502,36.812)
C4': (-12.830,16.554,33.477)
C2': (-13.233,17.351,31.301)
C2: (-15.283,15.607,27.488)
N1: (-16.263,14.687,27.390)
N3: (-14.450,15.850,28.506)
N6: (-17.471,12.949,28.326)
N7: (-15.638,13.403,30.817)
N9: (-14.070,15.014,30.792)
O5': (-12.451,15.478,35.586)
O3': (-13.569,18.846,33.205)
OP2: (-14.282,14.161,36.524)
C3': (-13.787,17.501,32.720)
C1': (-12.954,15.852,31.230)
C5': (-13.500,15.970,34.716)
O4': (-12.549,15.472,32.546)
C8: (-14.673,13.997,31.505)
O2': (-12.033,18.111,31.137)
C6: (-16.496,13.879,28.452)
C5: (-15.680,14.057,29.589)
C4: (-14.709,15.033,29.560)
P: (-12.857,14.502,36.812)
C4': (-12.830,16.554,33.477)
C2': (-13.233,17.351,31.301)
C2: (-15.283,15.607,27.488)
N1: (-16.263,14.687,27.390)
N3: (-14.450,15.850,28.506)
N6: (-17.471,12.949,28.326)
N7: (-15.638,13.403,30.817)
N9: (-14.070,15.014,30.792)
O5': (-12.451,15.478,35.586)
O3': (-13.569,18.846,33.205)
C2: (-19.814,9.829,29.945)
OP1: (-25.738,7.740,25.268)
OP2: (-25.018,7.019,27.620)
C4: (-20.952,8.292,31.238)
O5': (-23.637,8.638,26.384)
C3': (-20.730,9.304,25.809)
C1': (-20.646,10.656,27.758)
O4': (-21.902,10.883,27.136)
C5': (-23.280,9.720,25.500)
P: (-25.135,8.071,26.564)
O2: (-18.834,10.560,29.744)
C4': (-21.905,10.293,25.789)
C2': (-19.717,10.047,26.689)
O2': (-19.117,11.093,25.930)
N1: (-20.807,9.806,28.955)
N3: (-19.895,9.105,31.090)
N4: (-20.996,7.539,32.373)
C6: (-21.895,8.976,29.151)
C5: (-21.994,8.225,30.267)
O3': (-20.229,9.125,24.493)
OP1: (-25.738,7.740,25.268)
OP2: (-25.018,7.019,27.620)
C4: (-20.952,8.292,31.238)
O5': (-23.637,8.638,26.384)
C3': (-20.730,9.304,25.809)
C1': (-20.646,10.656,27.758)
O4': (-21.902,10.883,27.136)
C5': (-23.280,9.720,25.500)
P: (-25.135,8.071,26.564)
O2: (-18.834,10.560,29.744)
C4': (-21.905,10.293,25.789)
C2': (-19.717,10.047,26.689)
O2': (-19.117,11.093,25.930)
N1: (-20.807,9.806,28.955)
N3: (-19.895,9.105,31.090)
N4: (-20.996,7.539,32.373)
C6: (-21.895,8.976,29.151)
C5: (-21.994,8.225,30.267)
O3': (-20.229,9.125,24.493)
Image (generated by PyMOL):