Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01018:01086
Extra
PDB:
ATOM 1 O3' A A1017 54.553 98.972 110.008 1.00 42.81 O
ATOM 2 P G A1018 53.278 98.093 110.454 1.00 43.85 P
ATOM 3 OP1 G A1018 52.815 98.578 111.793 1.00 39.22 O
ATOM 4 OP2 G A1018 53.598 96.651 110.262 1.00 42.30 O
ATOM 5 O5' G A1018 52.176 98.482 109.373 1.00 42.65 O
ATOM 6 C5' G A1018 51.688 99.825 109.276 1.00 40.64 C
ATOM 7 C4' G A1018 51.794 100.313 107.853 1.00 39.37 C
ATOM 8 O4' G A1018 51.192 101.635 107.764 1.00 38.55 O
ATOM 9 C3' G A1018 53.214 100.466 107.318 1.00 38.90 C
ATOM 10 O3' G A1018 53.183 100.286 105.906 1.00 38.58 O
ATOM 11 C2' G A1018 53.514 101.927 107.631 1.00 39.03 C
ATOM 12 O2' G A1018 54.523 102.462 106.802 1.00 41.38 O
ATOM 13 C1' G A1018 52.160 102.562 107.324 1.00 37.73 C
ATOM 14 N9 G A1018 51.861 103.862 107.919 1.00 35.97 N
ATOM 15 C8 G A1018 52.531 104.522 108.919 1.00 35.48 C
ATOM 16 N7 G A1018 52.008 105.684 109.205 1.00 34.52 N
ATOM 17 C5 G A1018 50.927 105.794 108.347 1.00 35.05 C
ATOM 18 C6 G A1018 49.983 106.839 108.182 1.00 36.11 C
ATOM 19 O6 G A1018 49.899 107.911 108.796 1.00 36.61 O
ATOM 20 N1 G A1018 49.064 106.541 107.179 1.00 37.14 N
ATOM 21 C2 G A1018 49.050 105.389 106.431 1.00 37.06 C
ATOM 22 N2 G A1018 48.091 105.293 105.499 1.00 38.95 N
ATOM 23 N3 G A1018 49.914 104.407 106.582 1.00 36.87 N
ATOM 24 C4 G A1018 50.821 104.676 107.549 1.00 36.51 C
ATOM 25 P C A1019 53.953 99.049 105.234 1.00 42.29 P
ATOM 26 OP1 C A1019 53.520 98.963 103.816 1.00 43.66 O
ATOM 27 OP2 C A1019 53.782 97.866 106.114 1.00 42.89 O
ATOM 28 O5' C A1019 55.476 99.515 105.208 1.00 41.41 O
TER
ATOM 1 O3' C B1085 45.630 99.357 111.733 1.00 45.70 O
ATOM 2 P C B1086 47.087 99.353 111.052 1.00 46.52 P
ATOM 3 OP1 C B1086 47.019 100.139 109.790 1.00 46.61 O
ATOM 4 OP2 C B1086 47.569 97.948 111.012 1.00 46.12 O
ATOM 5 O5' C B1086 47.966 100.184 112.086 1.00 44.52 O
ATOM 6 C5' C B1086 49.343 99.875 112.317 1.00 41.80 C
ATOM 7 C4' C B1086 50.083 101.128 112.694 1.00 41.91 C
ATOM 8 O4' C B1086 50.249 101.961 111.521 1.00 40.34 O
ATOM 9 C3' C B1086 49.379 102.012 113.714 1.00 40.95 C
ATOM 10 O3' C B1086 49.684 101.587 115.050 1.00 42.45 O
ATOM 11 C2' C B1086 49.969 103.387 113.420 1.00 39.79 C
ATOM 12 O2' C B1086 51.211 103.586 114.056 1.00 41.29 O
ATOM 13 C1' C B1086 50.181 103.326 111.899 1.00 39.90 C
ATOM 14 N1 C B1086 49.143 103.990 111.081 1.00 39.03 N
ATOM 15 C2 C B1086 48.964 105.379 111.199 1.00 36.87 C
ATOM 16 O2 C B1086 49.683 106.017 111.979 1.00 36.14 O
ATOM 17 N3 C B1086 48.015 105.986 110.452 1.00 35.65 N
ATOM 18 C4 C B1086 47.278 105.271 109.602 1.00 34.78 C
ATOM 19 N4 C B1086 46.373 105.917 108.868 1.00 36.34 N
ATOM 20 C5 C B1086 47.439 103.864 109.461 1.00 35.51 C
ATOM 21 C6 C B1086 48.367 103.269 110.214 1.00 36.50 C
ATOM 22 P U B1087 48.498 101.271 116.094 1.00 43.38 P
ATOM 23 OP1 U B1087 49.084 101.244 117.457 1.00 41.73 O
ATOM 24 OP2 U B1087 47.751 100.085 115.593 1.00 42.63 O
ATOM 25 O5' U B1087 47.550 102.545 115.997 1.00 42.63 O
TER
ATOM 2 P G A1018 53.278 98.093 110.454 1.00 43.85 P
ATOM 3 OP1 G A1018 52.815 98.578 111.793 1.00 39.22 O
ATOM 4 OP2 G A1018 53.598 96.651 110.262 1.00 42.30 O
ATOM 5 O5' G A1018 52.176 98.482 109.373 1.00 42.65 O
ATOM 6 C5' G A1018 51.688 99.825 109.276 1.00 40.64 C
ATOM 7 C4' G A1018 51.794 100.313 107.853 1.00 39.37 C
ATOM 8 O4' G A1018 51.192 101.635 107.764 1.00 38.55 O
ATOM 9 C3' G A1018 53.214 100.466 107.318 1.00 38.90 C
ATOM 10 O3' G A1018 53.183 100.286 105.906 1.00 38.58 O
ATOM 11 C2' G A1018 53.514 101.927 107.631 1.00 39.03 C
ATOM 12 O2' G A1018 54.523 102.462 106.802 1.00 41.38 O
ATOM 13 C1' G A1018 52.160 102.562 107.324 1.00 37.73 C
ATOM 14 N9 G A1018 51.861 103.862 107.919 1.00 35.97 N
ATOM 15 C8 G A1018 52.531 104.522 108.919 1.00 35.48 C
ATOM 16 N7 G A1018 52.008 105.684 109.205 1.00 34.52 N
ATOM 17 C5 G A1018 50.927 105.794 108.347 1.00 35.05 C
ATOM 18 C6 G A1018 49.983 106.839 108.182 1.00 36.11 C
ATOM 19 O6 G A1018 49.899 107.911 108.796 1.00 36.61 O
ATOM 20 N1 G A1018 49.064 106.541 107.179 1.00 37.14 N
ATOM 21 C2 G A1018 49.050 105.389 106.431 1.00 37.06 C
ATOM 22 N2 G A1018 48.091 105.293 105.499 1.00 38.95 N
ATOM 23 N3 G A1018 49.914 104.407 106.582 1.00 36.87 N
ATOM 24 C4 G A1018 50.821 104.676 107.549 1.00 36.51 C
ATOM 25 P C A1019 53.953 99.049 105.234 1.00 42.29 P
ATOM 26 OP1 C A1019 53.520 98.963 103.816 1.00 43.66 O
ATOM 27 OP2 C A1019 53.782 97.866 106.114 1.00 42.89 O
ATOM 28 O5' C A1019 55.476 99.515 105.208 1.00 41.41 O
TER
ATOM 1 O3' C B1085 45.630 99.357 111.733 1.00 45.70 O
ATOM 2 P C B1086 47.087 99.353 111.052 1.00 46.52 P
ATOM 3 OP1 C B1086 47.019 100.139 109.790 1.00 46.61 O
ATOM 4 OP2 C B1086 47.569 97.948 111.012 1.00 46.12 O
ATOM 5 O5' C B1086 47.966 100.184 112.086 1.00 44.52 O
ATOM 6 C5' C B1086 49.343 99.875 112.317 1.00 41.80 C
ATOM 7 C4' C B1086 50.083 101.128 112.694 1.00 41.91 C
ATOM 8 O4' C B1086 50.249 101.961 111.521 1.00 40.34 O
ATOM 9 C3' C B1086 49.379 102.012 113.714 1.00 40.95 C
ATOM 10 O3' C B1086 49.684 101.587 115.050 1.00 42.45 O
ATOM 11 C2' C B1086 49.969 103.387 113.420 1.00 39.79 C
ATOM 12 O2' C B1086 51.211 103.586 114.056 1.00 41.29 O
ATOM 13 C1' C B1086 50.181 103.326 111.899 1.00 39.90 C
ATOM 14 N1 C B1086 49.143 103.990 111.081 1.00 39.03 N
ATOM 15 C2 C B1086 48.964 105.379 111.199 1.00 36.87 C
ATOM 16 O2 C B1086 49.683 106.017 111.979 1.00 36.14 O
ATOM 17 N3 C B1086 48.015 105.986 110.452 1.00 35.65 N
ATOM 18 C4 C B1086 47.278 105.271 109.602 1.00 34.78 C
ATOM 19 N4 C B1086 46.373 105.917 108.868 1.00 36.34 N
ATOM 20 C5 C B1086 47.439 103.864 109.461 1.00 35.51 C
ATOM 21 C6 C B1086 48.367 103.269 110.214 1.00 36.50 C
ATOM 22 P U B1087 48.498 101.271 116.094 1.00 43.38 P
ATOM 23 OP1 U B1087 49.084 101.244 117.457 1.00 41.73 O
ATOM 24 OP2 U B1087 47.751 100.085 115.593 1.00 42.63 O
ATOM 25 O5' U B1087 47.550 102.545 115.997 1.00 42.63 O
TER
Atoms:
OP1: (52.815,98.578,111.793)
OP2: (53.598,96.651,110.262)
C3': (53.214,100.466,107.318)
C1': (52.160,102.562,107.324)
C5': (51.688,99.825,109.276)
O6: (49.899,107.911,108.796)
O4': (51.192,101.635,107.764)
C8: (52.531,104.522,108.919)
C2: (49.050,105.389,106.431)
C6: (49.983,106.839,108.182)
C5: (50.927,105.794,108.347)
C4: (50.821,104.676,107.549)
P: (53.278,98.093,110.454)
C4': (51.794,100.313,107.853)
C2': (53.514,101.927,107.631)
O2': (54.523,102.462,106.802)
N1: (49.064,106.541,107.179)
N2: (48.091,105.293,105.499)
N3: (49.914,104.407,106.582)
N7: (52.008,105.684,109.205)
N9: (51.861,103.862,107.919)
O5': (52.176,98.482,109.373)
O3': (53.183,100.286,105.906)
OP2: (53.598,96.651,110.262)
C3': (53.214,100.466,107.318)
C1': (52.160,102.562,107.324)
C5': (51.688,99.825,109.276)
O6: (49.899,107.911,108.796)
O4': (51.192,101.635,107.764)
C8: (52.531,104.522,108.919)
C2: (49.050,105.389,106.431)
C6: (49.983,106.839,108.182)
C5: (50.927,105.794,108.347)
C4: (50.821,104.676,107.549)
P: (53.278,98.093,110.454)
C4': (51.794,100.313,107.853)
C2': (53.514,101.927,107.631)
O2': (54.523,102.462,106.802)
N1: (49.064,106.541,107.179)
N2: (48.091,105.293,105.499)
N3: (49.914,104.407,106.582)
N7: (52.008,105.684,109.205)
N9: (51.861,103.862,107.919)
O5': (52.176,98.482,109.373)
O3': (53.183,100.286,105.906)
C2: (48.964,105.379,111.199)
OP1: (47.019,100.139,109.790)
OP2: (47.569,97.948,111.012)
C4: (47.278,105.271,109.602)
O5': (47.966,100.184,112.086)
C3': (49.379,102.012,113.714)
C1': (50.181,103.326,111.899)
O4': (50.249,101.961,111.521)
C5': (49.343,99.875,112.317)
P: (47.087,99.353,111.052)
O2: (49.683,106.017,111.979)
C4': (50.083,101.128,112.694)
C2': (49.969,103.387,113.420)
O2': (51.211,103.586,114.056)
N1: (49.143,103.990,111.081)
N3: (48.015,105.986,110.452)
N4: (46.373,105.917,108.868)
C6: (48.367,103.269,110.214)
C5: (47.439,103.864,109.461)
O3': (49.684,101.587,115.050)
OP1: (47.019,100.139,109.790)
OP2: (47.569,97.948,111.012)
C4: (47.278,105.271,109.602)
O5': (47.966,100.184,112.086)
C3': (49.379,102.012,113.714)
C1': (50.181,103.326,111.899)
O4': (50.249,101.961,111.521)
C5': (49.343,99.875,112.317)
P: (47.087,99.353,111.052)
O2: (49.683,106.017,111.979)
C4': (50.083,101.128,112.694)
C2': (49.969,103.387,113.420)
O2': (51.211,103.586,114.056)
N1: (49.143,103.990,111.081)
N3: (48.015,105.986,110.452)
N4: (46.373,105.917,108.868)
C6: (48.367,103.269,110.214)
C5: (47.439,103.864,109.461)
O3': (49.684,101.587,115.050)
Image (generated by PyMOL):