Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:912:99
Extra
PDB:
ATOM 1 O3' C A 11 53.125 37.463 111.971 1.00 59.87 O
ATOM 2 P A A 12 54.570 36.834 112.235 1.00 59.96 P
ATOM 3 OP1 A A 12 54.434 35.796 113.281 1.00 61.36 O
ATOM 4 OP2 A A 12 55.534 37.948 112.438 1.00 58.91 O
ATOM 5 O5' A A 12 54.898 36.116 110.857 1.00 58.41 O
ATOM 6 C5' A A 12 54.911 34.692 110.752 1.00 55.80 C
ATOM 7 C4' A A 12 55.652 34.289 109.510 1.00 55.75 C
ATOM 8 O4' A A 12 54.878 34.700 108.347 1.00 55.33 O
ATOM 9 C3' A A 12 57.025 34.939 109.354 1.00 55.39 C
ATOM 10 O3' A A 12 57.891 34.035 108.675 1.00 55.31 O
ATOM 11 C2' A A 12 56.709 36.127 108.453 1.00 55.41 C
ATOM 12 O2' A A 12 57.796 36.634 107.714 1.00 55.03 O
ATOM 13 C1' A A 12 55.687 35.499 107.515 1.00 56.02 C
ATOM 14 N9 A A 12 54.857 36.468 106.801 1.00 56.09 N
ATOM 15 C8 A A 12 53.771 37.188 107.238 1.00 55.08 C
ATOM 16 N7 A A 12 53.289 38.013 106.339 1.00 53.83 N
ATOM 17 C5 A A 12 54.104 37.815 105.235 1.00 54.84 C
ATOM 18 C6 A A 12 54.118 38.394 103.957 1.00 56.24 C
ATOM 19 N6 A A 12 53.256 39.332 103.564 1.00 56.66 N
ATOM 20 N1 A A 12 55.064 37.973 103.085 1.00 57.07 N
ATOM 21 C2 A A 12 55.932 37.028 103.487 1.00 56.36 C
ATOM 22 N3 A A 12 56.018 36.409 104.662 1.00 54.34 N
ATOM 23 C4 A A 12 55.065 36.856 105.501 1.00 55.44 C
ATOM 24 P G A 13 59.199 33.462 109.416 1.00 56.40 P
ATOM 25 OP1 G A 13 59.639 32.295 108.618 1.00 56.87 O
ATOM 26 OP2 G A 13 58.938 33.304 110.875 1.00 55.63 O
ATOM 27 O5' G A 13 60.301 34.598 109.227 1.00 57.41 O
TER
ATOM 1 O3' C B 8 52.007 42.626 98.876 1.00 50.89 O
ATOM 2 P C B 9 53.368 43.478 98.970 1.00 53.02 P
ATOM 3 OP1 C B 9 52.994 44.754 99.616 1.00 54.61 O
ATOM 4 OP2 C B 9 54.024 43.493 97.641 1.00 53.14 O
ATOM 5 O5' C B 9 54.325 42.680 99.964 1.00 50.78 O
ATOM 6 C5' C B 9 53.980 42.505 101.343 1.00 50.85 C
ATOM 7 C4' C B 9 54.987 41.609 102.033 1.00 51.80 C
ATOM 8 O4' C B 9 55.055 40.336 101.329 1.00 51.06 O
ATOM 9 C3' C B 9 56.423 42.125 102.127 1.00 51.38 C
ATOM 10 O3' C B 9 57.013 41.657 103.334 1.00 52.37 O
ATOM 11 C2' C B 9 57.106 41.424 100.961 1.00 51.50 C
ATOM 12 O2' C B 9 58.485 41.228 101.198 1.00 52.80 O
ATOM 13 C1' C B 9 56.388 40.075 100.949 1.00 51.37 C
ATOM 14 N1 C B 9 56.383 39.455 99.616 1.00 51.39 N
ATOM 15 C2 C B 9 57.128 38.285 99.400 1.00 51.54 C
ATOM 16 O2 C B 9 57.714 37.749 100.356 1.00 51.93 O
ATOM 17 N3 C B 9 57.180 37.764 98.156 1.00 50.29 N
ATOM 18 C4 C B 9 56.514 38.347 97.159 1.00 50.05 C
ATOM 19 N4 C B 9 56.613 37.814 95.945 1.00 51.22 N
ATOM 20 C5 C B 9 55.719 39.507 97.360 1.00 50.90 C
ATOM 21 C6 C B 9 55.681 40.023 98.590 1.00 51.30 C
ATOM 22 P A B 10 56.994 42.580 104.643 1.00 52.46 P
ATOM 23 OP1 A B 10 55.629 43.129 104.820 1.00 53.18 O
ATOM 24 OP2 A B 10 58.147 43.502 104.564 1.00 54.22 O
ATOM 25 O5' A B 10 57.263 41.553 105.827 1.00 53.22 O
TER
ATOM 2 P A A 12 54.570 36.834 112.235 1.00 59.96 P
ATOM 3 OP1 A A 12 54.434 35.796 113.281 1.00 61.36 O
ATOM 4 OP2 A A 12 55.534 37.948 112.438 1.00 58.91 O
ATOM 5 O5' A A 12 54.898 36.116 110.857 1.00 58.41 O
ATOM 6 C5' A A 12 54.911 34.692 110.752 1.00 55.80 C
ATOM 7 C4' A A 12 55.652 34.289 109.510 1.00 55.75 C
ATOM 8 O4' A A 12 54.878 34.700 108.347 1.00 55.33 O
ATOM 9 C3' A A 12 57.025 34.939 109.354 1.00 55.39 C
ATOM 10 O3' A A 12 57.891 34.035 108.675 1.00 55.31 O
ATOM 11 C2' A A 12 56.709 36.127 108.453 1.00 55.41 C
ATOM 12 O2' A A 12 57.796 36.634 107.714 1.00 55.03 O
ATOM 13 C1' A A 12 55.687 35.499 107.515 1.00 56.02 C
ATOM 14 N9 A A 12 54.857 36.468 106.801 1.00 56.09 N
ATOM 15 C8 A A 12 53.771 37.188 107.238 1.00 55.08 C
ATOM 16 N7 A A 12 53.289 38.013 106.339 1.00 53.83 N
ATOM 17 C5 A A 12 54.104 37.815 105.235 1.00 54.84 C
ATOM 18 C6 A A 12 54.118 38.394 103.957 1.00 56.24 C
ATOM 19 N6 A A 12 53.256 39.332 103.564 1.00 56.66 N
ATOM 20 N1 A A 12 55.064 37.973 103.085 1.00 57.07 N
ATOM 21 C2 A A 12 55.932 37.028 103.487 1.00 56.36 C
ATOM 22 N3 A A 12 56.018 36.409 104.662 1.00 54.34 N
ATOM 23 C4 A A 12 55.065 36.856 105.501 1.00 55.44 C
ATOM 24 P G A 13 59.199 33.462 109.416 1.00 56.40 P
ATOM 25 OP1 G A 13 59.639 32.295 108.618 1.00 56.87 O
ATOM 26 OP2 G A 13 58.938 33.304 110.875 1.00 55.63 O
ATOM 27 O5' G A 13 60.301 34.598 109.227 1.00 57.41 O
TER
ATOM 1 O3' C B 8 52.007 42.626 98.876 1.00 50.89 O
ATOM 2 P C B 9 53.368 43.478 98.970 1.00 53.02 P
ATOM 3 OP1 C B 9 52.994 44.754 99.616 1.00 54.61 O
ATOM 4 OP2 C B 9 54.024 43.493 97.641 1.00 53.14 O
ATOM 5 O5' C B 9 54.325 42.680 99.964 1.00 50.78 O
ATOM 6 C5' C B 9 53.980 42.505 101.343 1.00 50.85 C
ATOM 7 C4' C B 9 54.987 41.609 102.033 1.00 51.80 C
ATOM 8 O4' C B 9 55.055 40.336 101.329 1.00 51.06 O
ATOM 9 C3' C B 9 56.423 42.125 102.127 1.00 51.38 C
ATOM 10 O3' C B 9 57.013 41.657 103.334 1.00 52.37 O
ATOM 11 C2' C B 9 57.106 41.424 100.961 1.00 51.50 C
ATOM 12 O2' C B 9 58.485 41.228 101.198 1.00 52.80 O
ATOM 13 C1' C B 9 56.388 40.075 100.949 1.00 51.37 C
ATOM 14 N1 C B 9 56.383 39.455 99.616 1.00 51.39 N
ATOM 15 C2 C B 9 57.128 38.285 99.400 1.00 51.54 C
ATOM 16 O2 C B 9 57.714 37.749 100.356 1.00 51.93 O
ATOM 17 N3 C B 9 57.180 37.764 98.156 1.00 50.29 N
ATOM 18 C4 C B 9 56.514 38.347 97.159 1.00 50.05 C
ATOM 19 N4 C B 9 56.613 37.814 95.945 1.00 51.22 N
ATOM 20 C5 C B 9 55.719 39.507 97.360 1.00 50.90 C
ATOM 21 C6 C B 9 55.681 40.023 98.590 1.00 51.30 C
ATOM 22 P A B 10 56.994 42.580 104.643 1.00 52.46 P
ATOM 23 OP1 A B 10 55.629 43.129 104.820 1.00 53.18 O
ATOM 24 OP2 A B 10 58.147 43.502 104.564 1.00 54.22 O
ATOM 25 O5' A B 10 57.263 41.553 105.827 1.00 53.22 O
TER
Atoms:
OP1: (54.434,35.796,113.281)
OP2: (55.534,37.948,112.438)
C3': (57.025,34.939,109.354)
C1': (55.687,35.499,107.515)
C5': (54.911,34.692,110.752)
O4': (54.878,34.700,108.347)
C8: (53.771,37.188,107.238)
O2': (57.796,36.634,107.714)
C6: (54.118,38.394,103.957)
C5: (54.104,37.815,105.235)
C4: (55.065,36.856,105.501)
P: (54.570,36.834,112.235)
C4': (55.652,34.289,109.510)
C2': (56.709,36.127,108.453)
C2: (55.932,37.028,103.487)
N1: (55.064,37.973,103.085)
N3: (56.018,36.409,104.662)
N6: (53.256,39.332,103.564)
N7: (53.289,38.013,106.339)
N9: (54.857,36.468,106.801)
O5': (54.898,36.116,110.857)
O3': (57.891,34.035,108.675)
OP2: (55.534,37.948,112.438)
C3': (57.025,34.939,109.354)
C1': (55.687,35.499,107.515)
C5': (54.911,34.692,110.752)
O4': (54.878,34.700,108.347)
C8: (53.771,37.188,107.238)
O2': (57.796,36.634,107.714)
C6: (54.118,38.394,103.957)
C5: (54.104,37.815,105.235)
C4: (55.065,36.856,105.501)
P: (54.570,36.834,112.235)
C4': (55.652,34.289,109.510)
C2': (56.709,36.127,108.453)
C2: (55.932,37.028,103.487)
N1: (55.064,37.973,103.085)
N3: (56.018,36.409,104.662)
N6: (53.256,39.332,103.564)
N7: (53.289,38.013,106.339)
N9: (54.857,36.468,106.801)
O5': (54.898,36.116,110.857)
O3': (57.891,34.035,108.675)
C2: (57.128,38.285,99.400)
OP1: (52.994,44.754,99.616)
OP2: (54.024,43.493,97.641)
C4: (56.514,38.347,97.159)
O5': (54.325,42.680,99.964)
C3': (56.423,42.125,102.127)
C1': (56.388,40.075,100.949)
O4': (55.055,40.336,101.329)
C5': (53.980,42.505,101.343)
P: (53.368,43.478,98.970)
O2: (57.714,37.749,100.356)
C4': (54.987,41.609,102.033)
C2': (57.106,41.424,100.961)
O2': (58.485,41.228,101.198)
N1: (56.383,39.455,99.616)
N3: (57.180,37.764,98.156)
N4: (56.613,37.814,95.945)
C6: (55.681,40.023,98.590)
C5: (55.719,39.507,97.360)
O3': (57.013,41.657,103.334)
OP1: (52.994,44.754,99.616)
OP2: (54.024,43.493,97.641)
C4: (56.514,38.347,97.159)
O5': (54.325,42.680,99.964)
C3': (56.423,42.125,102.127)
C1': (56.388,40.075,100.949)
O4': (55.055,40.336,101.329)
C5': (53.980,42.505,101.343)
P: (53.368,43.478,98.970)
O2: (57.714,37.749,100.356)
C4': (54.987,41.609,102.033)
C2': (57.106,41.424,100.961)
O2': (58.485,41.228,101.198)
N1: (56.383,39.455,99.616)
N3: (57.180,37.764,98.156)
N4: (56.613,37.814,95.945)
C6: (55.681,40.023,98.590)
C5: (55.719,39.507,97.360)
O3': (57.013,41.657,103.334)
Image (generated by PyMOL):