Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DK1:B50:B17
Extra
PDB:
ATOM 1 O3' U A 49 -2.679 43.813 8.175 1.00 45.99 O
ATOM 2 P G A 50 -3.985 42.975 7.724 1.00 54.13 P
ATOM 3 OP1 G A 50 -3.530 41.598 7.387 1.00 45.03 O
ATOM 4 OP2 G A 50 -4.745 43.759 6.724 1.00 44.10 O
ATOM 5 O5' G A 50 -4.880 42.895 9.037 1.00 34.38 O
ATOM 6 C5' G A 50 -4.517 42.017 10.098 1.00 32.48 C
ATOM 7 C4' G A 50 -5.391 42.271 11.290 1.00 41.97 C
ATOM 8 O4' G A 50 -5.524 43.714 11.442 1.00 39.07 O
ATOM 9 C3' G A 50 -6.814 41.723 11.219 1.00 34.82 C
ATOM 10 O3' G A 50 -7.250 41.494 12.541 1.00 36.47 O
ATOM 11 C2' G A 50 -7.604 42.922 10.724 1.00 36.49 C
ATOM 12 O2' G A 50 -8.941 42.875 11.164 1.00 50.77 O
ATOM 13 C1' G A 50 -6.890 44.057 11.445 1.00 41.74 C
ATOM 14 N9 G A 50 -7.063 45.338 10.776 1.00 34.30 N
ATOM 15 C8 G A 50 -6.836 45.632 9.451 1.00 34.91 C
ATOM 16 N7 G A 50 -7.148 46.864 9.141 1.00 32.12 N
ATOM 17 C5 G A 50 -7.592 47.412 10.337 1.00 38.25 C
ATOM 18 C6 G A 50 -8.081 48.710 10.626 1.00 44.10 C
ATOM 19 O6 G A 50 -8.198 49.666 9.868 1.00 41.34 O
ATOM 20 N1 G A 50 -8.447 48.837 11.961 1.00 43.84 N
ATOM 21 C2 G A 50 -8.329 47.848 12.904 1.00 43.22 C
ATOM 22 N2 G A 50 -8.714 48.173 14.144 1.00 60.79 N
ATOM 23 N3 G A 50 -7.864 46.632 12.652 1.00 36.87 N
ATOM 24 C4 G A 50 -7.525 46.484 11.356 1.00 28.20 C
ATOM 25 P A A 51 -7.810 40.058 12.968 1.00 50.65 P
ATOM 26 OP1 A A 51 -6.725 39.054 12.754 1.00 37.48 O
ATOM 27 OP2 A A 51 -9.125 39.897 12.287 1.00 40.67 O
ATOM 28 O5' A A 51 -8.024 40.192 14.544 1.00 45.62 O
TER
ATOM 1 O3' A B 16 -12.649 52.330 18.779 1.00 70.02 O
ATOM 2 P G B 17 -11.282 52.822 19.453 1.00 60.49 P
ATOM 3 OP1 G B 17 -11.622 53.870 20.444 1.00 72.42 O
ATOM 4 OP2 G B 17 -10.327 53.124 18.350 1.00 50.66 O
ATOM 5 O5' G B 17 -10.783 51.553 20.261 1.00 39.95 O
ATOM 6 C5' G B 17 -11.427 51.191 21.470 1.00 43.44 C
ATOM 7 C4' G B 17 -10.928 49.857 21.925 1.00 48.89 C
ATOM 8 O4' G B 17 -11.299 48.852 20.949 1.00 56.17 O
ATOM 9 C3' G B 17 -9.420 49.757 21.991 1.00 52.41 C
ATOM 10 O3' G B 17 -8.973 50.299 23.225 1.00 57.22 O
ATOM 11 C2' G B 17 -9.205 48.250 21.905 1.00 52.69 C
ATOM 12 O2' G B 17 -9.411 47.630 23.161 1.00 38.45 O
ATOM 13 C1' G B 17 -10.307 47.841 20.915 1.00 41.06 C
ATOM 14 N9 G B 17 -9.848 47.719 19.538 1.00 29.02 N
ATOM 15 C8 G B 17 -10.108 48.583 18.508 1.00 19.09 C
ATOM 16 N7 G B 17 -9.507 48.250 17.394 1.00 26.10 N
ATOM 17 C5 G B 17 -8.823 47.082 17.715 1.00 19.76 C
ATOM 18 C6 G B 17 -7.970 46.278 16.927 1.00 35.63 C
ATOM 19 O6 G B 17 -7.616 46.442 15.746 1.00 47.62 O
ATOM 20 N1 G B 17 -7.490 45.193 17.646 1.00 30.96 N
ATOM 21 C2 G B 17 -7.778 44.925 18.953 1.00 36.56 C
ATOM 22 N2 G B 17 -7.203 43.823 19.462 1.00 31.16 N
ATOM 23 N3 G B 17 -8.563 45.677 19.705 1.00 23.94 N
ATOM 24 C4 G B 17 -9.044 46.731 19.026 1.00 23.95 C
ATOM 25 P A B 18 -7.448 50.765 23.400 1.00 49.69 P
ATOM 26 OP1 A B 18 -7.257 50.918 24.864 1.00 51.71 O
ATOM 27 OP2 A B 18 -7.169 51.900 22.505 1.00 32.80 O
ATOM 28 O5' A B 18 -6.593 49.518 22.888 1.00 54.66 O
TER
ATOM 2 P G A 50 -3.985 42.975 7.724 1.00 54.13 P
ATOM 3 OP1 G A 50 -3.530 41.598 7.387 1.00 45.03 O
ATOM 4 OP2 G A 50 -4.745 43.759 6.724 1.00 44.10 O
ATOM 5 O5' G A 50 -4.880 42.895 9.037 1.00 34.38 O
ATOM 6 C5' G A 50 -4.517 42.017 10.098 1.00 32.48 C
ATOM 7 C4' G A 50 -5.391 42.271 11.290 1.00 41.97 C
ATOM 8 O4' G A 50 -5.524 43.714 11.442 1.00 39.07 O
ATOM 9 C3' G A 50 -6.814 41.723 11.219 1.00 34.82 C
ATOM 10 O3' G A 50 -7.250 41.494 12.541 1.00 36.47 O
ATOM 11 C2' G A 50 -7.604 42.922 10.724 1.00 36.49 C
ATOM 12 O2' G A 50 -8.941 42.875 11.164 1.00 50.77 O
ATOM 13 C1' G A 50 -6.890 44.057 11.445 1.00 41.74 C
ATOM 14 N9 G A 50 -7.063 45.338 10.776 1.00 34.30 N
ATOM 15 C8 G A 50 -6.836 45.632 9.451 1.00 34.91 C
ATOM 16 N7 G A 50 -7.148 46.864 9.141 1.00 32.12 N
ATOM 17 C5 G A 50 -7.592 47.412 10.337 1.00 38.25 C
ATOM 18 C6 G A 50 -8.081 48.710 10.626 1.00 44.10 C
ATOM 19 O6 G A 50 -8.198 49.666 9.868 1.00 41.34 O
ATOM 20 N1 G A 50 -8.447 48.837 11.961 1.00 43.84 N
ATOM 21 C2 G A 50 -8.329 47.848 12.904 1.00 43.22 C
ATOM 22 N2 G A 50 -8.714 48.173 14.144 1.00 60.79 N
ATOM 23 N3 G A 50 -7.864 46.632 12.652 1.00 36.87 N
ATOM 24 C4 G A 50 -7.525 46.484 11.356 1.00 28.20 C
ATOM 25 P A A 51 -7.810 40.058 12.968 1.00 50.65 P
ATOM 26 OP1 A A 51 -6.725 39.054 12.754 1.00 37.48 O
ATOM 27 OP2 A A 51 -9.125 39.897 12.287 1.00 40.67 O
ATOM 28 O5' A A 51 -8.024 40.192 14.544 1.00 45.62 O
TER
ATOM 1 O3' A B 16 -12.649 52.330 18.779 1.00 70.02 O
ATOM 2 P G B 17 -11.282 52.822 19.453 1.00 60.49 P
ATOM 3 OP1 G B 17 -11.622 53.870 20.444 1.00 72.42 O
ATOM 4 OP2 G B 17 -10.327 53.124 18.350 1.00 50.66 O
ATOM 5 O5' G B 17 -10.783 51.553 20.261 1.00 39.95 O
ATOM 6 C5' G B 17 -11.427 51.191 21.470 1.00 43.44 C
ATOM 7 C4' G B 17 -10.928 49.857 21.925 1.00 48.89 C
ATOM 8 O4' G B 17 -11.299 48.852 20.949 1.00 56.17 O
ATOM 9 C3' G B 17 -9.420 49.757 21.991 1.00 52.41 C
ATOM 10 O3' G B 17 -8.973 50.299 23.225 1.00 57.22 O
ATOM 11 C2' G B 17 -9.205 48.250 21.905 1.00 52.69 C
ATOM 12 O2' G B 17 -9.411 47.630 23.161 1.00 38.45 O
ATOM 13 C1' G B 17 -10.307 47.841 20.915 1.00 41.06 C
ATOM 14 N9 G B 17 -9.848 47.719 19.538 1.00 29.02 N
ATOM 15 C8 G B 17 -10.108 48.583 18.508 1.00 19.09 C
ATOM 16 N7 G B 17 -9.507 48.250 17.394 1.00 26.10 N
ATOM 17 C5 G B 17 -8.823 47.082 17.715 1.00 19.76 C
ATOM 18 C6 G B 17 -7.970 46.278 16.927 1.00 35.63 C
ATOM 19 O6 G B 17 -7.616 46.442 15.746 1.00 47.62 O
ATOM 20 N1 G B 17 -7.490 45.193 17.646 1.00 30.96 N
ATOM 21 C2 G B 17 -7.778 44.925 18.953 1.00 36.56 C
ATOM 22 N2 G B 17 -7.203 43.823 19.462 1.00 31.16 N
ATOM 23 N3 G B 17 -8.563 45.677 19.705 1.00 23.94 N
ATOM 24 C4 G B 17 -9.044 46.731 19.026 1.00 23.95 C
ATOM 25 P A B 18 -7.448 50.765 23.400 1.00 49.69 P
ATOM 26 OP1 A B 18 -7.257 50.918 24.864 1.00 51.71 O
ATOM 27 OP2 A B 18 -7.169 51.900 22.505 1.00 32.80 O
ATOM 28 O5' A B 18 -6.593 49.518 22.888 1.00 54.66 O
TER
Atoms:
OP1: (-3.530,41.598,7.387)
OP2: (-4.745,43.759,6.724)
C3': (-6.814,41.723,11.219)
C1': (-6.890,44.057,11.445)
C5': (-4.517,42.017,10.098)
O6: (-8.198,49.666,9.868)
O4': (-5.524,43.714,11.442)
C8: (-6.836,45.632,9.451)
C2: (-8.329,47.848,12.904)
C6: (-8.081,48.710,10.626)
C5: (-7.592,47.412,10.337)
C4: (-7.525,46.484,11.356)
P: (-3.985,42.975,7.724)
C4': (-5.391,42.271,11.290)
C2': (-7.604,42.922,10.724)
O2': (-8.941,42.875,11.164)
N1: (-8.447,48.837,11.961)
N2: (-8.714,48.173,14.144)
N3: (-7.864,46.632,12.652)
N7: (-7.148,46.864,9.141)
N9: (-7.063,45.338,10.776)
O5': (-4.880,42.895,9.037)
O3': (-7.250,41.494,12.541)
OP2: (-4.745,43.759,6.724)
C3': (-6.814,41.723,11.219)
C1': (-6.890,44.057,11.445)
C5': (-4.517,42.017,10.098)
O6: (-8.198,49.666,9.868)
O4': (-5.524,43.714,11.442)
C8: (-6.836,45.632,9.451)
C2: (-8.329,47.848,12.904)
C6: (-8.081,48.710,10.626)
C5: (-7.592,47.412,10.337)
C4: (-7.525,46.484,11.356)
P: (-3.985,42.975,7.724)
C4': (-5.391,42.271,11.290)
C2': (-7.604,42.922,10.724)
O2': (-8.941,42.875,11.164)
N1: (-8.447,48.837,11.961)
N2: (-8.714,48.173,14.144)
N3: (-7.864,46.632,12.652)
N7: (-7.148,46.864,9.141)
N9: (-7.063,45.338,10.776)
O5': (-4.880,42.895,9.037)
O3': (-7.250,41.494,12.541)
OP1: (-11.622,53.870,20.444)
OP2: (-10.327,53.124,18.350)
C3': (-9.420,49.757,21.991)
C1': (-10.307,47.841,20.915)
C5': (-11.427,51.191,21.470)
O6: (-7.616,46.442,15.746)
O4': (-11.299,48.852,20.949)
C8: (-10.108,48.583,18.508)
C2: (-7.778,44.925,18.953)
C6: (-7.970,46.278,16.927)
C5: (-8.823,47.082,17.715)
C4: (-9.044,46.731,19.026)
P: (-11.282,52.822,19.453)
C4': (-10.928,49.857,21.925)
C2': (-9.205,48.250,21.905)
O2': (-9.411,47.630,23.161)
N1: (-7.490,45.193,17.646)
N2: (-7.203,43.823,19.462)
N3: (-8.563,45.677,19.705)
N7: (-9.507,48.250,17.394)
N9: (-9.848,47.719,19.538)
O5': (-10.783,51.553,20.261)
O3': (-8.973,50.299,23.225)
OP2: (-10.327,53.124,18.350)
C3': (-9.420,49.757,21.991)
C1': (-10.307,47.841,20.915)
C5': (-11.427,51.191,21.470)
O6: (-7.616,46.442,15.746)
O4': (-11.299,48.852,20.949)
C8: (-10.108,48.583,18.508)
C2: (-7.778,44.925,18.953)
C6: (-7.970,46.278,16.927)
C5: (-8.823,47.082,17.715)
C4: (-9.044,46.731,19.026)
P: (-11.282,52.822,19.453)
C4': (-10.928,49.857,21.925)
C2': (-9.205,48.250,21.905)
O2': (-9.411,47.630,23.161)
N1: (-7.490,45.193,17.646)
N2: (-7.203,43.823,19.462)
N3: (-8.563,45.677,19.705)
N7: (-9.507,48.250,17.394)
N9: (-9.848,47.719,19.538)
O5': (-10.783,51.553,20.261)
O3': (-8.973,50.299,23.225)
Image (generated by PyMOL):