Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11086:1897
Extra
PDB:
ATOM 1 O3' C A1085 53.691 -12.429 44.570 1.00 31.47 O
ATOM 2 P G A1086 54.644 -12.507 45.854 1.00 32.03 P
ATOM 3 OP1 G A1086 55.151 -11.126 46.091 1.00 31.98 O
ATOM 4 OP2 G A1086 55.623 -13.589 45.650 1.00 32.13 O
ATOM 5 O5' G A1086 53.639 -12.949 46.997 1.00 31.87 O
ATOM 6 C5' G A1086 52.638 -12.091 47.512 1.00 31.75 C
ATOM 7 C4' G A1086 51.910 -12.807 48.595 1.00 31.64 C
ATOM 8 O4' G A1086 51.347 -14.026 48.062 1.00 31.72 O
ATOM 9 C3' G A1086 52.788 -13.271 49.724 1.00 31.58 C
ATOM 10 O3' G A1086 53.049 -12.204 50.634 1.00 31.47 O
ATOM 11 C2' G A1086 51.997 -14.436 50.296 1.00 31.54 C
ATOM 12 O2' G A1086 50.977 -13.973 51.158 1.00 31.42 O
ATOM 13 C1' G A1086 51.336 -15.022 49.035 1.00 31.67 C
ATOM 14 N9 G A1086 52.072 -16.177 48.506 1.00 31.81 N
ATOM 15 C8 G A1086 53.074 -16.019 47.592 1.00 31.93 C
ATOM 16 N7 G A1086 53.669 -17.125 47.258 1.00 32.05 N
ATOM 17 C5 G A1086 53.008 -18.083 47.982 1.00 32.01 C
ATOM 18 C6 G A1086 53.210 -19.464 47.991 1.00 32.12 C
ATOM 19 O6 G A1086 54.062 -20.023 47.325 1.00 32.27 O
ATOM 20 N1 G A1086 52.336 -20.190 48.826 1.00 32.06 N
ATOM 21 C2 G A1086 51.394 -19.574 49.556 1.00 31.91 C
ATOM 22 N2 G A1086 50.660 -20.351 50.314 1.00 31.87 N
ATOM 23 N3 G A1086 51.189 -18.267 49.554 1.00 31.80 N
ATOM 24 C4 G A1086 52.011 -17.545 48.753 1.00 31.86 C
ATOM 25 P A A1087 54.170 -12.299 51.797 1.00 36.40 P
ATOM 26 OP1 A A1087 53.872 -13.486 52.610 1.00 36.37 O
ATOM 27 OP2 A A1087 54.189 -11.017 52.456 1.00 36.31 O
ATOM 28 O5' A A1087 55.528 -12.538 51.022 1.00 36.53 O
TER
ATOM 1 O3' A B 896 50.649 -26.913 53.228 1.00 30.91 O
ATOM 2 P G B 897 49.441 -27.059 52.197 1.00 34.20 P
ATOM 3 OP1 G B 897 49.282 -28.506 51.941 1.00 34.40 O
ATOM 4 OP2 G B 897 49.709 -26.155 51.064 1.00 34.20 O
ATOM 5 O5' G B 897 48.219 -26.519 53.036 1.00 34.03 O
ATOM 6 C5' G B 897 47.253 -25.629 52.484 1.00 33.96 C
ATOM 7 C4' G B 897 46.754 -24.697 53.533 1.00 33.76 C
ATOM 8 O4' G B 897 47.782 -23.754 53.858 1.00 33.66 O
ATOM 9 C3' G B 897 45.587 -23.832 53.187 1.00 33.68 C
ATOM 10 O3' G B 897 44.331 -24.545 53.248 1.00 33.74 O
ATOM 11 C2' G B 897 45.714 -22.740 54.257 1.00 33.50 C
ATOM 12 O2' G B 897 45.187 -23.176 55.494 1.00 33.45 O
ATOM 13 C1' G B 897 47.224 -22.619 54.422 1.00 33.50 C
ATOM 14 N9 G B 897 47.737 -21.416 53.750 1.00 33.45 N
ATOM 15 C8 G B 897 48.281 -21.140 52.521 1.00 33.53 C
ATOM 16 N7 G B 897 48.506 -19.859 52.331 1.00 33.45 N
ATOM 17 C5 G B 897 48.031 -19.291 53.498 1.00 33.30 C
ATOM 18 C6 G B 897 47.971 -17.974 53.925 1.00 33.18 C
ATOM 19 O6 G B 897 48.337 -16.945 53.342 1.00 33.17 O
ATOM 20 N1 G B 897 47.464 -17.895 55.208 1.00 33.08 N
ATOM 21 C2 G B 897 47.047 -18.903 55.976 1.00 33.09 C
ATOM 22 N2 G B 897 46.573 -18.576 57.167 1.00 32.99 N
ATOM 23 N3 G B 897 47.083 -20.121 55.588 1.00 33.20 N
ATOM 24 C4 G B 897 47.583 -20.225 54.365 1.00 33.30 C
ATOM 25 P U B 898 43.463 -24.939 51.909 1.00 36.32 P
ATOM 26 OP1 U B 898 43.913 -24.080 50.784 1.00 36.34 O
ATOM 27 OP2 U B 898 42.058 -24.896 52.327 1.00 36.28 O
ATOM 28 O5' U B 898 43.871 -26.441 51.618 1.00 36.52 O
TER
ATOM 2 P G A1086 54.644 -12.507 45.854 1.00 32.03 P
ATOM 3 OP1 G A1086 55.151 -11.126 46.091 1.00 31.98 O
ATOM 4 OP2 G A1086 55.623 -13.589 45.650 1.00 32.13 O
ATOM 5 O5' G A1086 53.639 -12.949 46.997 1.00 31.87 O
ATOM 6 C5' G A1086 52.638 -12.091 47.512 1.00 31.75 C
ATOM 7 C4' G A1086 51.910 -12.807 48.595 1.00 31.64 C
ATOM 8 O4' G A1086 51.347 -14.026 48.062 1.00 31.72 O
ATOM 9 C3' G A1086 52.788 -13.271 49.724 1.00 31.58 C
ATOM 10 O3' G A1086 53.049 -12.204 50.634 1.00 31.47 O
ATOM 11 C2' G A1086 51.997 -14.436 50.296 1.00 31.54 C
ATOM 12 O2' G A1086 50.977 -13.973 51.158 1.00 31.42 O
ATOM 13 C1' G A1086 51.336 -15.022 49.035 1.00 31.67 C
ATOM 14 N9 G A1086 52.072 -16.177 48.506 1.00 31.81 N
ATOM 15 C8 G A1086 53.074 -16.019 47.592 1.00 31.93 C
ATOM 16 N7 G A1086 53.669 -17.125 47.258 1.00 32.05 N
ATOM 17 C5 G A1086 53.008 -18.083 47.982 1.00 32.01 C
ATOM 18 C6 G A1086 53.210 -19.464 47.991 1.00 32.12 C
ATOM 19 O6 G A1086 54.062 -20.023 47.325 1.00 32.27 O
ATOM 20 N1 G A1086 52.336 -20.190 48.826 1.00 32.06 N
ATOM 21 C2 G A1086 51.394 -19.574 49.556 1.00 31.91 C
ATOM 22 N2 G A1086 50.660 -20.351 50.314 1.00 31.87 N
ATOM 23 N3 G A1086 51.189 -18.267 49.554 1.00 31.80 N
ATOM 24 C4 G A1086 52.011 -17.545 48.753 1.00 31.86 C
ATOM 25 P A A1087 54.170 -12.299 51.797 1.00 36.40 P
ATOM 26 OP1 A A1087 53.872 -13.486 52.610 1.00 36.37 O
ATOM 27 OP2 A A1087 54.189 -11.017 52.456 1.00 36.31 O
ATOM 28 O5' A A1087 55.528 -12.538 51.022 1.00 36.53 O
TER
ATOM 1 O3' A B 896 50.649 -26.913 53.228 1.00 30.91 O
ATOM 2 P G B 897 49.441 -27.059 52.197 1.00 34.20 P
ATOM 3 OP1 G B 897 49.282 -28.506 51.941 1.00 34.40 O
ATOM 4 OP2 G B 897 49.709 -26.155 51.064 1.00 34.20 O
ATOM 5 O5' G B 897 48.219 -26.519 53.036 1.00 34.03 O
ATOM 6 C5' G B 897 47.253 -25.629 52.484 1.00 33.96 C
ATOM 7 C4' G B 897 46.754 -24.697 53.533 1.00 33.76 C
ATOM 8 O4' G B 897 47.782 -23.754 53.858 1.00 33.66 O
ATOM 9 C3' G B 897 45.587 -23.832 53.187 1.00 33.68 C
ATOM 10 O3' G B 897 44.331 -24.545 53.248 1.00 33.74 O
ATOM 11 C2' G B 897 45.714 -22.740 54.257 1.00 33.50 C
ATOM 12 O2' G B 897 45.187 -23.176 55.494 1.00 33.45 O
ATOM 13 C1' G B 897 47.224 -22.619 54.422 1.00 33.50 C
ATOM 14 N9 G B 897 47.737 -21.416 53.750 1.00 33.45 N
ATOM 15 C8 G B 897 48.281 -21.140 52.521 1.00 33.53 C
ATOM 16 N7 G B 897 48.506 -19.859 52.331 1.00 33.45 N
ATOM 17 C5 G B 897 48.031 -19.291 53.498 1.00 33.30 C
ATOM 18 C6 G B 897 47.971 -17.974 53.925 1.00 33.18 C
ATOM 19 O6 G B 897 48.337 -16.945 53.342 1.00 33.17 O
ATOM 20 N1 G B 897 47.464 -17.895 55.208 1.00 33.08 N
ATOM 21 C2 G B 897 47.047 -18.903 55.976 1.00 33.09 C
ATOM 22 N2 G B 897 46.573 -18.576 57.167 1.00 32.99 N
ATOM 23 N3 G B 897 47.083 -20.121 55.588 1.00 33.20 N
ATOM 24 C4 G B 897 47.583 -20.225 54.365 1.00 33.30 C
ATOM 25 P U B 898 43.463 -24.939 51.909 1.00 36.32 P
ATOM 26 OP1 U B 898 43.913 -24.080 50.784 1.00 36.34 O
ATOM 27 OP2 U B 898 42.058 -24.896 52.327 1.00 36.28 O
ATOM 28 O5' U B 898 43.871 -26.441 51.618 1.00 36.52 O
TER
Atoms:
OP1: (55.151,-11.126,46.091)
OP2: (55.623,-13.589,45.650)
C3': (52.788,-13.271,49.724)
C1': (51.336,-15.022,49.035)
C5': (52.638,-12.091,47.512)
O6: (54.062,-20.023,47.325)
O4': (51.347,-14.026,48.062)
C8: (53.074,-16.019,47.592)
C2: (51.394,-19.574,49.556)
C6: (53.210,-19.464,47.991)
C5: (53.008,-18.083,47.982)
C4: (52.011,-17.545,48.753)
P: (54.644,-12.507,45.854)
C4': (51.910,-12.807,48.595)
C2': (51.997,-14.436,50.296)
O2': (50.977,-13.973,51.158)
N1: (52.336,-20.190,48.826)
N2: (50.660,-20.351,50.314)
N3: (51.189,-18.267,49.554)
N7: (53.669,-17.125,47.258)
N9: (52.072,-16.177,48.506)
O5': (53.639,-12.949,46.997)
O3': (53.049,-12.204,50.634)
OP2: (55.623,-13.589,45.650)
C3': (52.788,-13.271,49.724)
C1': (51.336,-15.022,49.035)
C5': (52.638,-12.091,47.512)
O6: (54.062,-20.023,47.325)
O4': (51.347,-14.026,48.062)
C8: (53.074,-16.019,47.592)
C2: (51.394,-19.574,49.556)
C6: (53.210,-19.464,47.991)
C5: (53.008,-18.083,47.982)
C4: (52.011,-17.545,48.753)
P: (54.644,-12.507,45.854)
C4': (51.910,-12.807,48.595)
C2': (51.997,-14.436,50.296)
O2': (50.977,-13.973,51.158)
N1: (52.336,-20.190,48.826)
N2: (50.660,-20.351,50.314)
N3: (51.189,-18.267,49.554)
N7: (53.669,-17.125,47.258)
N9: (52.072,-16.177,48.506)
O5': (53.639,-12.949,46.997)
O3': (53.049,-12.204,50.634)
OP1: (49.282,-28.506,51.941)
OP2: (49.709,-26.155,51.064)
C3': (45.587,-23.832,53.187)
C1': (47.224,-22.619,54.422)
C5': (47.253,-25.629,52.484)
O6: (48.337,-16.945,53.342)
O4': (47.782,-23.754,53.858)
C8: (48.281,-21.140,52.521)
C2: (47.047,-18.903,55.976)
C6: (47.971,-17.974,53.925)
C5: (48.031,-19.291,53.498)
C4: (47.583,-20.225,54.365)
P: (49.441,-27.059,52.197)
C4': (46.754,-24.697,53.533)
C2': (45.714,-22.740,54.257)
O2': (45.187,-23.176,55.494)
N1: (47.464,-17.895,55.208)
N2: (46.573,-18.576,57.167)
N3: (47.083,-20.121,55.588)
N7: (48.506,-19.859,52.331)
N9: (47.737,-21.416,53.750)
O5': (48.219,-26.519,53.036)
O3': (44.331,-24.545,53.248)
OP2: (49.709,-26.155,51.064)
C3': (45.587,-23.832,53.187)
C1': (47.224,-22.619,54.422)
C5': (47.253,-25.629,52.484)
O6: (48.337,-16.945,53.342)
O4': (47.782,-23.754,53.858)
C8: (48.281,-21.140,52.521)
C2: (47.047,-18.903,55.976)
C6: (47.971,-17.974,53.925)
C5: (48.031,-19.291,53.498)
C4: (47.583,-20.225,54.365)
P: (49.441,-27.059,52.197)
C4': (46.754,-24.697,53.533)
C2': (45.714,-22.740,54.257)
O2': (45.187,-23.176,55.494)
N1: (47.464,-17.895,55.208)
N2: (46.573,-18.576,57.167)
N3: (47.083,-20.121,55.588)
N7: (48.506,-19.859,52.331)
N9: (47.737,-21.416,53.750)
O5': (48.219,-26.519,53.036)
O3': (44.331,-24.545,53.248)
Image (generated by PyMOL):