Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A234:A253
Extra
PDB:
ATOM 1 O3' C A 233 92.857 111.907 -9.189 1.00 68.46 O
ATOM 2 P G A 234 94.339 112.511 -9.294 1.00 71.43 P
ATOM 3 OP1 G A 234 94.565 112.801 -10.748 1.00 71.01 O
ATOM 4 OP2 G A 234 95.277 111.601 -8.568 1.00 70.40 O
ATOM 5 O5' G A 234 94.205 113.889 -8.502 1.00 70.05 O
ATOM 6 C5' G A 234 93.015 114.687 -8.651 1.00 68.58 C
ATOM 7 C4' G A 234 93.040 115.850 -7.701 1.00 68.14 C
ATOM 8 O4' G A 234 92.808 115.364 -6.346 1.00 68.43 O
ATOM 9 C3' G A 234 94.352 116.625 -7.679 1.00 67.80 C
ATOM 10 O3' G A 234 94.122 118.026 -7.567 1.00 68.55 O
ATOM 11 C2' G A 234 95.055 116.048 -6.456 1.00 67.70 C
ATOM 12 O2' G A 234 95.987 116.943 -5.888 1.00 66.94 O
ATOM 13 C1' G A 234 93.880 115.747 -5.517 1.00 68.44 C
ATOM 14 N9 G A 234 94.157 114.659 -4.576 1.00 69.17 N
ATOM 15 C8 G A 234 94.704 113.429 -4.874 1.00 69.23 C
ATOM 16 N7 G A 234 94.962 112.710 -3.814 1.00 69.69 N
ATOM 17 C5 G A 234 94.540 113.499 -2.749 1.00 69.79 C
ATOM 18 C6 G A 234 94.606 113.266 -1.347 1.00 70.16 C
ATOM 19 O6 G A 234 95.105 112.303 -0.745 1.00 69.77 O
ATOM 20 N1 G A 234 94.034 114.313 -0.628 1.00 70.17 N
ATOM 21 C2 G A 234 93.485 115.446 -1.177 1.00 70.05 C
ATOM 22 N2 G A 234 92.964 116.328 -0.309 1.00 71.26 N
ATOM 23 N3 G A 234 93.447 115.694 -2.478 1.00 69.63 N
ATOM 24 C4 G A 234 93.992 114.686 -3.202 1.00 69.58 C
ATOM 25 P A A 235 94.730 119.021 -8.684 1.00 69.88 P
ATOM 26 OP1 A A 235 94.340 118.506 -10.027 1.00 70.89 O
ATOM 27 OP2 A A 235 96.163 119.266 -8.385 1.00 69.03 O
ATOM 28 O5' A A 235 93.953 120.387 -8.455 1.00 68.77 O
TER
ATOM 1 O3' G B 252 91.656 119.589 3.686 1.00 59.10 O
ATOM 2 P U B 253 90.373 119.463 4.628 1.00 57.57 P
ATOM 3 OP1 U B 253 90.734 120.071 5.931 1.00 58.31 O
ATOM 4 OP2 U B 253 89.931 118.052 4.583 1.00 58.54 O
ATOM 5 O5' U B 253 89.297 120.397 3.923 1.00 57.78 O
ATOM 6 C5' U B 253 89.135 121.769 4.340 1.00 58.07 C
ATOM 7 C4' U B 253 88.675 122.613 3.181 1.00 59.45 C
ATOM 8 O4' U B 253 89.775 122.795 2.245 1.00 61.02 O
ATOM 9 C3' U B 253 87.577 121.954 2.367 1.00 60.06 C
ATOM 10 O3' U B 253 86.298 122.171 2.963 1.00 59.62 O
ATOM 11 C2' U B 253 87.767 122.560 0.978 1.00 59.78 C
ATOM 12 O2' U B 253 87.150 123.814 0.798 1.00 58.53 O
ATOM 13 C1' U B 253 89.295 122.700 0.907 1.00 60.83 C
ATOM 14 N1 U B 253 89.970 121.566 0.239 1.00 62.24 N
ATOM 15 C2 U B 253 89.892 121.489 -1.147 1.00 62.07 C
ATOM 16 O2 U B 253 89.345 122.340 -1.834 1.00 63.39 O
ATOM 17 N3 U B 253 90.490 120.383 -1.701 1.00 61.33 N
ATOM 18 C4 U B 253 91.159 119.376 -1.046 1.00 60.93 C
ATOM 19 O4 U B 253 91.487 118.375 -1.677 1.00 61.64 O
ATOM 20 C5 U B 253 91.241 119.537 0.372 1.00 60.80 C
ATOM 21 C6 U B 253 90.655 120.594 0.957 1.00 61.35 C
ATOM 22 P G B 254 85.201 120.984 2.980 1.00 59.53 P
ATOM 23 OP1 G B 254 83.906 121.618 3.360 1.00 57.90 O
ATOM 24 OP2 G B 254 85.690 119.790 3.723 1.00 58.34 O
ATOM 25 O5' G B 254 85.096 120.563 1.453 1.00 60.88 O
TER
ATOM 2 P G A 234 94.339 112.511 -9.294 1.00 71.43 P
ATOM 3 OP1 G A 234 94.565 112.801 -10.748 1.00 71.01 O
ATOM 4 OP2 G A 234 95.277 111.601 -8.568 1.00 70.40 O
ATOM 5 O5' G A 234 94.205 113.889 -8.502 1.00 70.05 O
ATOM 6 C5' G A 234 93.015 114.687 -8.651 1.00 68.58 C
ATOM 7 C4' G A 234 93.040 115.850 -7.701 1.00 68.14 C
ATOM 8 O4' G A 234 92.808 115.364 -6.346 1.00 68.43 O
ATOM 9 C3' G A 234 94.352 116.625 -7.679 1.00 67.80 C
ATOM 10 O3' G A 234 94.122 118.026 -7.567 1.00 68.55 O
ATOM 11 C2' G A 234 95.055 116.048 -6.456 1.00 67.70 C
ATOM 12 O2' G A 234 95.987 116.943 -5.888 1.00 66.94 O
ATOM 13 C1' G A 234 93.880 115.747 -5.517 1.00 68.44 C
ATOM 14 N9 G A 234 94.157 114.659 -4.576 1.00 69.17 N
ATOM 15 C8 G A 234 94.704 113.429 -4.874 1.00 69.23 C
ATOM 16 N7 G A 234 94.962 112.710 -3.814 1.00 69.69 N
ATOM 17 C5 G A 234 94.540 113.499 -2.749 1.00 69.79 C
ATOM 18 C6 G A 234 94.606 113.266 -1.347 1.00 70.16 C
ATOM 19 O6 G A 234 95.105 112.303 -0.745 1.00 69.77 O
ATOM 20 N1 G A 234 94.034 114.313 -0.628 1.00 70.17 N
ATOM 21 C2 G A 234 93.485 115.446 -1.177 1.00 70.05 C
ATOM 22 N2 G A 234 92.964 116.328 -0.309 1.00 71.26 N
ATOM 23 N3 G A 234 93.447 115.694 -2.478 1.00 69.63 N
ATOM 24 C4 G A 234 93.992 114.686 -3.202 1.00 69.58 C
ATOM 25 P A A 235 94.730 119.021 -8.684 1.00 69.88 P
ATOM 26 OP1 A A 235 94.340 118.506 -10.027 1.00 70.89 O
ATOM 27 OP2 A A 235 96.163 119.266 -8.385 1.00 69.03 O
ATOM 28 O5' A A 235 93.953 120.387 -8.455 1.00 68.77 O
TER
ATOM 1 O3' G B 252 91.656 119.589 3.686 1.00 59.10 O
ATOM 2 P U B 253 90.373 119.463 4.628 1.00 57.57 P
ATOM 3 OP1 U B 253 90.734 120.071 5.931 1.00 58.31 O
ATOM 4 OP2 U B 253 89.931 118.052 4.583 1.00 58.54 O
ATOM 5 O5' U B 253 89.297 120.397 3.923 1.00 57.78 O
ATOM 6 C5' U B 253 89.135 121.769 4.340 1.00 58.07 C
ATOM 7 C4' U B 253 88.675 122.613 3.181 1.00 59.45 C
ATOM 8 O4' U B 253 89.775 122.795 2.245 1.00 61.02 O
ATOM 9 C3' U B 253 87.577 121.954 2.367 1.00 60.06 C
ATOM 10 O3' U B 253 86.298 122.171 2.963 1.00 59.62 O
ATOM 11 C2' U B 253 87.767 122.560 0.978 1.00 59.78 C
ATOM 12 O2' U B 253 87.150 123.814 0.798 1.00 58.53 O
ATOM 13 C1' U B 253 89.295 122.700 0.907 1.00 60.83 C
ATOM 14 N1 U B 253 89.970 121.566 0.239 1.00 62.24 N
ATOM 15 C2 U B 253 89.892 121.489 -1.147 1.00 62.07 C
ATOM 16 O2 U B 253 89.345 122.340 -1.834 1.00 63.39 O
ATOM 17 N3 U B 253 90.490 120.383 -1.701 1.00 61.33 N
ATOM 18 C4 U B 253 91.159 119.376 -1.046 1.00 60.93 C
ATOM 19 O4 U B 253 91.487 118.375 -1.677 1.00 61.64 O
ATOM 20 C5 U B 253 91.241 119.537 0.372 1.00 60.80 C
ATOM 21 C6 U B 253 90.655 120.594 0.957 1.00 61.35 C
ATOM 22 P G B 254 85.201 120.984 2.980 1.00 59.53 P
ATOM 23 OP1 G B 254 83.906 121.618 3.360 1.00 57.90 O
ATOM 24 OP2 G B 254 85.690 119.790 3.723 1.00 58.34 O
ATOM 25 O5' G B 254 85.096 120.563 1.453 1.00 60.88 O
TER
Atoms:
OP1: (94.565,112.801,-10.748)
OP2: (95.277,111.601,-8.568)
C3': (94.352,116.625,-7.679)
C1': (93.880,115.747,-5.517)
C5': (93.015,114.687,-8.651)
O6: (95.105,112.303,-0.745)
O4': (92.808,115.364,-6.346)
C8: (94.704,113.429,-4.874)
C2: (93.485,115.446,-1.177)
C6: (94.606,113.266,-1.347)
C5: (94.540,113.499,-2.749)
C4: (93.992,114.686,-3.202)
P: (94.339,112.511,-9.294)
C4': (93.040,115.850,-7.701)
C2': (95.055,116.048,-6.456)
O2': (95.987,116.943,-5.888)
N1: (94.034,114.313,-0.628)
N2: (92.964,116.328,-0.309)
N3: (93.447,115.694,-2.478)
N7: (94.962,112.710,-3.814)
N9: (94.157,114.659,-4.576)
O5': (94.205,113.889,-8.502)
O3': (94.122,118.026,-7.567)
OP2: (95.277,111.601,-8.568)
C3': (94.352,116.625,-7.679)
C1': (93.880,115.747,-5.517)
C5': (93.015,114.687,-8.651)
O6: (95.105,112.303,-0.745)
O4': (92.808,115.364,-6.346)
C8: (94.704,113.429,-4.874)
C2: (93.485,115.446,-1.177)
C6: (94.606,113.266,-1.347)
C5: (94.540,113.499,-2.749)
C4: (93.992,114.686,-3.202)
P: (94.339,112.511,-9.294)
C4': (93.040,115.850,-7.701)
C2': (95.055,116.048,-6.456)
O2': (95.987,116.943,-5.888)
N1: (94.034,114.313,-0.628)
N2: (92.964,116.328,-0.309)
N3: (93.447,115.694,-2.478)
N7: (94.962,112.710,-3.814)
N9: (94.157,114.659,-4.576)
O5': (94.205,113.889,-8.502)
O3': (94.122,118.026,-7.567)
C4: (91.159,119.376,-1.046)
N3: (90.490,120.383,-1.701)
OP1: (90.734,120.071,5.931)
OP2: (89.931,118.052,4.583)
C2: (89.892,121.489,-1.147)
C1': (89.295,122.700,0.907)
C3': (87.577,121.954,2.367)
O5': (89.297,120.397,3.923)
O4': (89.775,122.795,2.245)
C5': (89.135,121.769,4.340)
P: (90.373,119.463,4.628)
C4': (88.675,122.613,3.181)
C2': (87.767,122.560,0.978)
O2': (87.150,123.814,0.798)
N1: (89.970,121.566,0.239)
O4: (91.487,118.375,-1.677)
O2: (89.345,122.340,-1.834)
C6: (90.655,120.594,0.957)
C5: (91.241,119.537,0.372)
O3': (86.298,122.171,2.963)
N3: (90.490,120.383,-1.701)
OP1: (90.734,120.071,5.931)
OP2: (89.931,118.052,4.583)
C2: (89.892,121.489,-1.147)
C1': (89.295,122.700,0.907)
C3': (87.577,121.954,2.367)
O5': (89.297,120.397,3.923)
O4': (89.775,122.795,2.245)
C5': (89.135,121.769,4.340)
P: (90.373,119.463,4.628)
C4': (88.675,122.613,3.181)
C2': (87.767,122.560,0.978)
O2': (87.150,123.814,0.798)
N1: (89.970,121.566,0.239)
O4: (91.487,118.375,-1.677)
O2: (89.345,122.340,-1.834)
C6: (90.655,120.594,0.957)
C5: (91.241,119.537,0.372)
O3': (86.298,122.171,2.963)
Image (generated by PyMOL):