Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A519:A2
Extra
PDB:
ATOM 1 O3' C A 518 17.155 136.354 103.840 1.00 49.68 O
ATOM 2 P G A 519 16.844 137.392 105.020 1.00 51.83 P
ATOM 3 OP1 G A 519 16.663 136.610 106.272 1.00 51.68 O
ATOM 4 OP2 G A 519 15.783 138.350 104.583 1.00 50.90 O
ATOM 5 O5' G A 519 18.207 138.183 105.174 1.00 50.16 O
ATOM 6 C5' G A 519 19.393 137.520 105.591 1.00 49.25 C
ATOM 7 C4' G A 519 20.562 138.434 105.398 1.00 49.67 C
ATOM 8 O4' G A 519 20.536 138.915 104.025 1.00 50.17 O
ATOM 9 C3' G A 519 20.539 139.699 106.238 1.00 49.15 C
ATOM 10 O3' G A 519 21.020 139.469 107.575 1.00 48.44 O
ATOM 11 C2' G A 519 21.408 140.636 105.409 1.00 50.78 C
ATOM 12 O2' G A 519 22.782 140.360 105.570 1.00 50.32 O
ATOM 13 C1' G A 519 20.995 140.255 103.982 1.00 51.18 C
ATOM 14 N9 G A 519 19.940 141.103 103.429 1.00 52.80 N
ATOM 15 C8 G A 519 18.588 140.852 103.409 1.00 53.55 C
ATOM 16 N7 G A 519 17.898 141.805 102.846 1.00 53.84 N
ATOM 17 C5 G A 519 18.848 142.746 102.476 1.00 53.93 C
ATOM 18 C6 G A 519 18.696 144.000 101.828 1.00 53.79 C
ATOM 19 O6 G A 519 17.661 144.548 101.442 1.00 55.48 O
ATOM 20 N1 G A 519 19.920 144.625 101.635 1.00 53.55 N
ATOM 21 C2 G A 519 21.140 144.110 102.008 1.00 53.32 C
ATOM 22 N2 G A 519 22.227 144.852 101.693 1.00 53.71 N
ATOM 23 N3 G A 519 21.293 142.950 102.628 1.00 52.99 N
ATOM 24 C4 G A 519 20.114 142.326 102.825 1.00 53.40 C
ATOM 25 P A A 520 20.830 140.600 108.710 1.00 47.01 P
ATOM 26 OP1 A A 520 20.637 139.940 110.024 1.00 45.63 O
ATOM 27 OP2 A A 520 19.794 141.550 108.216 1.00 48.16 O
ATOM 28 O5' A A 520 22.259 141.304 108.753 1.00 45.27 O
TER
ATOM 1 O3' A B 1 26.077 150.755 100.913 1.00 56.36 O
ATOM 2 P U B 2 26.236 150.040 99.486 1.00 58.59 P
ATOM 3 OP1 U B 2 26.591 151.117 98.527 1.00 59.61 O
ATOM 4 OP2 U B 2 25.047 149.168 99.213 1.00 58.54 O
ATOM 5 O5' U B 2 27.520 149.118 99.684 1.00 56.80 O
ATOM 6 C5' U B 2 28.783 149.711 100.018 1.00 54.34 C
ATOM 7 C4' U B 2 29.717 148.690 100.605 1.00 52.52 C
ATOM 8 O4' U B 2 29.226 148.241 101.892 1.00 52.85 O
ATOM 9 C3' U B 2 29.832 147.408 99.811 1.00 51.89 C
ATOM 10 O3' U B 2 30.672 147.498 98.689 1.00 50.54 O
ATOM 11 C2' U B 2 30.354 146.425 100.839 1.00 52.75 C
ATOM 12 O2' U B 2 31.757 146.470 101.042 1.00 52.62 O
ATOM 13 C1' U B 2 29.575 146.870 102.077 1.00 52.34 C
ATOM 14 N1 U B 2 28.350 146.064 102.198 1.00 52.33 N
ATOM 15 C2 U B 2 28.493 144.767 102.668 1.00 53.39 C
ATOM 16 O2 U B 2 29.577 144.283 102.989 1.00 55.72 O
ATOM 17 N3 U B 2 27.329 144.047 102.739 1.00 52.72 N
ATOM 18 C4 U B 2 26.068 144.470 102.386 1.00 52.44 C
ATOM 19 O4 U B 2 25.132 143.672 102.425 1.00 53.51 O
ATOM 20 C5 U B 2 26.002 145.821 101.918 1.00 51.89 C
ATOM 21 C6 U B 2 27.115 146.553 101.845 1.00 51.01 C
ATOM 22 P G B 3 30.143 146.960 97.282 1.00 50.16 P
ATOM 23 OP1 G B 3 31.328 146.681 96.455 1.00 50.16 O
ATOM 24 OP2 G B 3 29.125 147.944 96.820 1.00 52.58 O
ATOM 25 O5' G B 3 29.452 145.563 97.625 1.00 47.69 O
TER
ATOM 2 P G A 519 16.844 137.392 105.020 1.00 51.83 P
ATOM 3 OP1 G A 519 16.663 136.610 106.272 1.00 51.68 O
ATOM 4 OP2 G A 519 15.783 138.350 104.583 1.00 50.90 O
ATOM 5 O5' G A 519 18.207 138.183 105.174 1.00 50.16 O
ATOM 6 C5' G A 519 19.393 137.520 105.591 1.00 49.25 C
ATOM 7 C4' G A 519 20.562 138.434 105.398 1.00 49.67 C
ATOM 8 O4' G A 519 20.536 138.915 104.025 1.00 50.17 O
ATOM 9 C3' G A 519 20.539 139.699 106.238 1.00 49.15 C
ATOM 10 O3' G A 519 21.020 139.469 107.575 1.00 48.44 O
ATOM 11 C2' G A 519 21.408 140.636 105.409 1.00 50.78 C
ATOM 12 O2' G A 519 22.782 140.360 105.570 1.00 50.32 O
ATOM 13 C1' G A 519 20.995 140.255 103.982 1.00 51.18 C
ATOM 14 N9 G A 519 19.940 141.103 103.429 1.00 52.80 N
ATOM 15 C8 G A 519 18.588 140.852 103.409 1.00 53.55 C
ATOM 16 N7 G A 519 17.898 141.805 102.846 1.00 53.84 N
ATOM 17 C5 G A 519 18.848 142.746 102.476 1.00 53.93 C
ATOM 18 C6 G A 519 18.696 144.000 101.828 1.00 53.79 C
ATOM 19 O6 G A 519 17.661 144.548 101.442 1.00 55.48 O
ATOM 20 N1 G A 519 19.920 144.625 101.635 1.00 53.55 N
ATOM 21 C2 G A 519 21.140 144.110 102.008 1.00 53.32 C
ATOM 22 N2 G A 519 22.227 144.852 101.693 1.00 53.71 N
ATOM 23 N3 G A 519 21.293 142.950 102.628 1.00 52.99 N
ATOM 24 C4 G A 519 20.114 142.326 102.825 1.00 53.40 C
ATOM 25 P A A 520 20.830 140.600 108.710 1.00 47.01 P
ATOM 26 OP1 A A 520 20.637 139.940 110.024 1.00 45.63 O
ATOM 27 OP2 A A 520 19.794 141.550 108.216 1.00 48.16 O
ATOM 28 O5' A A 520 22.259 141.304 108.753 1.00 45.27 O
TER
ATOM 1 O3' A B 1 26.077 150.755 100.913 1.00 56.36 O
ATOM 2 P U B 2 26.236 150.040 99.486 1.00 58.59 P
ATOM 3 OP1 U B 2 26.591 151.117 98.527 1.00 59.61 O
ATOM 4 OP2 U B 2 25.047 149.168 99.213 1.00 58.54 O
ATOM 5 O5' U B 2 27.520 149.118 99.684 1.00 56.80 O
ATOM 6 C5' U B 2 28.783 149.711 100.018 1.00 54.34 C
ATOM 7 C4' U B 2 29.717 148.690 100.605 1.00 52.52 C
ATOM 8 O4' U B 2 29.226 148.241 101.892 1.00 52.85 O
ATOM 9 C3' U B 2 29.832 147.408 99.811 1.00 51.89 C
ATOM 10 O3' U B 2 30.672 147.498 98.689 1.00 50.54 O
ATOM 11 C2' U B 2 30.354 146.425 100.839 1.00 52.75 C
ATOM 12 O2' U B 2 31.757 146.470 101.042 1.00 52.62 O
ATOM 13 C1' U B 2 29.575 146.870 102.077 1.00 52.34 C
ATOM 14 N1 U B 2 28.350 146.064 102.198 1.00 52.33 N
ATOM 15 C2 U B 2 28.493 144.767 102.668 1.00 53.39 C
ATOM 16 O2 U B 2 29.577 144.283 102.989 1.00 55.72 O
ATOM 17 N3 U B 2 27.329 144.047 102.739 1.00 52.72 N
ATOM 18 C4 U B 2 26.068 144.470 102.386 1.00 52.44 C
ATOM 19 O4 U B 2 25.132 143.672 102.425 1.00 53.51 O
ATOM 20 C5 U B 2 26.002 145.821 101.918 1.00 51.89 C
ATOM 21 C6 U B 2 27.115 146.553 101.845 1.00 51.01 C
ATOM 22 P G B 3 30.143 146.960 97.282 1.00 50.16 P
ATOM 23 OP1 G B 3 31.328 146.681 96.455 1.00 50.16 O
ATOM 24 OP2 G B 3 29.125 147.944 96.820 1.00 52.58 O
ATOM 25 O5' G B 3 29.452 145.563 97.625 1.00 47.69 O
TER
Atoms:
OP1: (16.663,136.610,106.272)
OP2: (15.783,138.350,104.583)
C3': (20.539,139.699,106.238)
C1': (20.995,140.255,103.982)
C5': (19.393,137.520,105.591)
O6: (17.661,144.548,101.442)
O4': (20.536,138.915,104.025)
C8: (18.588,140.852,103.409)
C2: (21.140,144.110,102.008)
C6: (18.696,144.000,101.828)
C5: (18.848,142.746,102.476)
C4: (20.114,142.326,102.825)
P: (16.844,137.392,105.020)
C4': (20.562,138.434,105.398)
C2': (21.408,140.636,105.409)
O2': (22.782,140.360,105.570)
N1: (19.920,144.625,101.635)
N2: (22.227,144.852,101.693)
N3: (21.293,142.950,102.628)
N7: (17.898,141.805,102.846)
N9: (19.940,141.103,103.429)
O5': (18.207,138.183,105.174)
O3': (21.020,139.469,107.575)
OP2: (15.783,138.350,104.583)
C3': (20.539,139.699,106.238)
C1': (20.995,140.255,103.982)
C5': (19.393,137.520,105.591)
O6: (17.661,144.548,101.442)
O4': (20.536,138.915,104.025)
C8: (18.588,140.852,103.409)
C2: (21.140,144.110,102.008)
C6: (18.696,144.000,101.828)
C5: (18.848,142.746,102.476)
C4: (20.114,142.326,102.825)
P: (16.844,137.392,105.020)
C4': (20.562,138.434,105.398)
C2': (21.408,140.636,105.409)
O2': (22.782,140.360,105.570)
N1: (19.920,144.625,101.635)
N2: (22.227,144.852,101.693)
N3: (21.293,142.950,102.628)
N7: (17.898,141.805,102.846)
N9: (19.940,141.103,103.429)
O5': (18.207,138.183,105.174)
O3': (21.020,139.469,107.575)
C4: (26.068,144.470,102.386)
N3: (27.329,144.047,102.739)
OP1: (26.591,151.117,98.527)
OP2: (25.047,149.168,99.213)
C2: (28.493,144.767,102.668)
C1': (29.575,146.870,102.077)
C3': (29.832,147.408,99.811)
O5': (27.520,149.118,99.684)
O4': (29.226,148.241,101.892)
C5': (28.783,149.711,100.018)
P: (26.236,150.040,99.486)
C4': (29.717,148.690,100.605)
C2': (30.354,146.425,100.839)
O2': (31.757,146.470,101.042)
N1: (28.350,146.064,102.198)
O4: (25.132,143.672,102.425)
O2: (29.577,144.283,102.989)
C6: (27.115,146.553,101.845)
C5: (26.002,145.821,101.918)
O3': (30.672,147.498,98.689)
N3: (27.329,144.047,102.739)
OP1: (26.591,151.117,98.527)
OP2: (25.047,149.168,99.213)
C2: (28.493,144.767,102.668)
C1': (29.575,146.870,102.077)
C3': (29.832,147.408,99.811)
O5': (27.520,149.118,99.684)
O4': (29.226,148.241,101.892)
C5': (28.783,149.711,100.018)
P: (26.236,150.040,99.486)
C4': (29.717,148.690,100.605)
C2': (30.354,146.425,100.839)
O2': (31.757,146.470,101.042)
N1: (28.350,146.064,102.198)
O4: (25.132,143.672,102.425)
O2: (29.577,144.283,102.989)
C6: (27.115,146.553,101.845)
C5: (26.002,145.821,101.918)
O3': (30.672,147.498,98.689)
Image (generated by PyMOL):