Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0234:0253
Extra
PDB:
ATOM 1 O3' C A 233 93.068 112.186 -9.358 1.00 75.19 O
ATOM 2 P G A 234 94.558 112.781 -9.401 1.00 78.09 P
ATOM 3 OP1 G A 234 94.868 113.181 -10.803 1.00 78.50 O
ATOM 4 OP2 G A 234 95.436 111.799 -8.707 1.00 76.79 O
ATOM 5 O5' G A 234 94.434 114.099 -8.519 1.00 77.03 O
ATOM 6 C5' G A 234 93.312 114.988 -8.696 1.00 76.70 C
ATOM 7 C4' G A 234 93.410 116.150 -7.744 1.00 77.13 C
ATOM 8 O4' G A 234 93.128 115.698 -6.390 1.00 77.44 O
ATOM 9 C3' G A 234 94.788 116.793 -7.704 1.00 77.66 C
ATOM 10 O3' G A 234 94.670 118.196 -7.522 1.00 77.40 O
ATOM 11 C2' G A 234 95.437 116.108 -6.507 1.00 78.03 C
ATOM 12 O2' G A 234 96.477 116.861 -5.917 1.00 78.92 O
ATOM 13 C1' G A 234 94.246 115.948 -5.564 1.00 78.17 C
ATOM 14 N9 G A 234 94.397 114.828 -4.637 1.00 79.15 N
ATOM 15 C8 G A 234 94.797 113.547 -4.940 1.00 79.66 C
ATOM 16 N7 G A 234 94.888 112.776 -3.891 1.00 80.10 N
ATOM 17 C5 G A 234 94.517 113.593 -2.830 1.00 81.02 C
ATOM 18 C6 G A 234 94.430 113.312 -1.440 1.00 81.98 C
ATOM 19 O6 G A 234 94.678 112.252 -0.850 1.00 83.18 O
ATOM 20 N1 G A 234 94.000 114.423 -0.720 1.00 81.94 N
ATOM 21 C2 G A 234 93.687 115.644 -1.263 1.00 81.44 C
ATOM 22 N2 G A 234 93.265 116.584 -0.402 1.00 81.83 N
ATOM 23 N3 G A 234 93.775 115.922 -2.555 1.00 80.97 N
ATOM 24 C4 G A 234 94.194 114.858 -3.275 1.00 80.22 C
ATOM 25 P A A 235 95.318 119.194 -8.607 1.00 76.83 P
ATOM 26 OP1 A A 235 95.107 118.614 -9.961 1.00 77.34 O
ATOM 27 OP2 A A 235 96.704 119.512 -8.154 1.00 76.01 O
ATOM 28 O5' A A 235 94.427 120.509 -8.491 1.00 74.14 O
TER
ATOM 1 O3' G B 252 91.766 119.775 3.574 1.00 64.15 O
ATOM 2 P U B 253 90.472 119.779 4.515 1.00 61.71 P
ATOM 3 OP1 U B 253 90.883 120.410 5.789 1.00 62.79 O
ATOM 4 OP2 U B 253 89.887 118.419 4.526 1.00 63.01 O
ATOM 5 O5' U B 253 89.454 120.739 3.767 1.00 62.00 O
ATOM 6 C5' U B 253 89.254 122.093 4.197 1.00 62.50 C
ATOM 7 C4' U B 253 88.824 122.931 3.026 1.00 62.53 C
ATOM 8 O4' U B 253 89.948 123.112 2.128 1.00 62.54 O
ATOM 9 C3' U B 253 87.766 122.263 2.171 1.00 62.29 C
ATOM 10 O3' U B 253 86.468 122.461 2.704 1.00 64.24 O
ATOM 11 C2' U B 253 87.974 122.926 0.820 1.00 61.53 C
ATOM 12 O2' U B 253 87.396 124.214 0.767 1.00 61.87 O
ATOM 13 C1' U B 253 89.502 123.041 0.783 1.00 61.02 C
ATOM 14 N1 U B 253 90.172 121.898 0.138 1.00 59.91 N
ATOM 15 C2 U B 253 90.009 121.735 -1.231 1.00 59.51 C
ATOM 16 O2 U B 253 89.349 122.497 -1.923 1.00 59.46 O
ATOM 17 N3 U B 253 90.651 120.647 -1.761 1.00 58.08 N
ATOM 18 C4 U B 253 91.423 119.729 -1.092 1.00 59.10 C
ATOM 19 O4 U B 253 91.929 118.796 -1.719 1.00 60.75 O
ATOM 20 C5 U B 253 91.552 119.966 0.313 1.00 58.35 C
ATOM 21 C6 U B 253 90.939 121.012 0.866 1.00 58.16 C
ATOM 22 P G B 254 85.430 121.240 2.727 1.00 65.45 P
ATOM 23 OP1 G B 254 84.121 121.773 3.193 1.00 63.07 O
ATOM 24 OP2 G B 254 86.071 120.114 3.452 1.00 63.95 O
ATOM 25 O5' G B 254 85.296 120.817 1.194 1.00 66.66 O
TER
ATOM 2 P G A 234 94.558 112.781 -9.401 1.00 78.09 P
ATOM 3 OP1 G A 234 94.868 113.181 -10.803 1.00 78.50 O
ATOM 4 OP2 G A 234 95.436 111.799 -8.707 1.00 76.79 O
ATOM 5 O5' G A 234 94.434 114.099 -8.519 1.00 77.03 O
ATOM 6 C5' G A 234 93.312 114.988 -8.696 1.00 76.70 C
ATOM 7 C4' G A 234 93.410 116.150 -7.744 1.00 77.13 C
ATOM 8 O4' G A 234 93.128 115.698 -6.390 1.00 77.44 O
ATOM 9 C3' G A 234 94.788 116.793 -7.704 1.00 77.66 C
ATOM 10 O3' G A 234 94.670 118.196 -7.522 1.00 77.40 O
ATOM 11 C2' G A 234 95.437 116.108 -6.507 1.00 78.03 C
ATOM 12 O2' G A 234 96.477 116.861 -5.917 1.00 78.92 O
ATOM 13 C1' G A 234 94.246 115.948 -5.564 1.00 78.17 C
ATOM 14 N9 G A 234 94.397 114.828 -4.637 1.00 79.15 N
ATOM 15 C8 G A 234 94.797 113.547 -4.940 1.00 79.66 C
ATOM 16 N7 G A 234 94.888 112.776 -3.891 1.00 80.10 N
ATOM 17 C5 G A 234 94.517 113.593 -2.830 1.00 81.02 C
ATOM 18 C6 G A 234 94.430 113.312 -1.440 1.00 81.98 C
ATOM 19 O6 G A 234 94.678 112.252 -0.850 1.00 83.18 O
ATOM 20 N1 G A 234 94.000 114.423 -0.720 1.00 81.94 N
ATOM 21 C2 G A 234 93.687 115.644 -1.263 1.00 81.44 C
ATOM 22 N2 G A 234 93.265 116.584 -0.402 1.00 81.83 N
ATOM 23 N3 G A 234 93.775 115.922 -2.555 1.00 80.97 N
ATOM 24 C4 G A 234 94.194 114.858 -3.275 1.00 80.22 C
ATOM 25 P A A 235 95.318 119.194 -8.607 1.00 76.83 P
ATOM 26 OP1 A A 235 95.107 118.614 -9.961 1.00 77.34 O
ATOM 27 OP2 A A 235 96.704 119.512 -8.154 1.00 76.01 O
ATOM 28 O5' A A 235 94.427 120.509 -8.491 1.00 74.14 O
TER
ATOM 1 O3' G B 252 91.766 119.775 3.574 1.00 64.15 O
ATOM 2 P U B 253 90.472 119.779 4.515 1.00 61.71 P
ATOM 3 OP1 U B 253 90.883 120.410 5.789 1.00 62.79 O
ATOM 4 OP2 U B 253 89.887 118.419 4.526 1.00 63.01 O
ATOM 5 O5' U B 253 89.454 120.739 3.767 1.00 62.00 O
ATOM 6 C5' U B 253 89.254 122.093 4.197 1.00 62.50 C
ATOM 7 C4' U B 253 88.824 122.931 3.026 1.00 62.53 C
ATOM 8 O4' U B 253 89.948 123.112 2.128 1.00 62.54 O
ATOM 9 C3' U B 253 87.766 122.263 2.171 1.00 62.29 C
ATOM 10 O3' U B 253 86.468 122.461 2.704 1.00 64.24 O
ATOM 11 C2' U B 253 87.974 122.926 0.820 1.00 61.53 C
ATOM 12 O2' U B 253 87.396 124.214 0.767 1.00 61.87 O
ATOM 13 C1' U B 253 89.502 123.041 0.783 1.00 61.02 C
ATOM 14 N1 U B 253 90.172 121.898 0.138 1.00 59.91 N
ATOM 15 C2 U B 253 90.009 121.735 -1.231 1.00 59.51 C
ATOM 16 O2 U B 253 89.349 122.497 -1.923 1.00 59.46 O
ATOM 17 N3 U B 253 90.651 120.647 -1.761 1.00 58.08 N
ATOM 18 C4 U B 253 91.423 119.729 -1.092 1.00 59.10 C
ATOM 19 O4 U B 253 91.929 118.796 -1.719 1.00 60.75 O
ATOM 20 C5 U B 253 91.552 119.966 0.313 1.00 58.35 C
ATOM 21 C6 U B 253 90.939 121.012 0.866 1.00 58.16 C
ATOM 22 P G B 254 85.430 121.240 2.727 1.00 65.45 P
ATOM 23 OP1 G B 254 84.121 121.773 3.193 1.00 63.07 O
ATOM 24 OP2 G B 254 86.071 120.114 3.452 1.00 63.95 O
ATOM 25 O5' G B 254 85.296 120.817 1.194 1.00 66.66 O
TER
Atoms:
OP1: (94.868,113.181,-10.803)
OP2: (95.436,111.799,-8.707)
C3': (94.788,116.793,-7.704)
C1': (94.246,115.948,-5.564)
C5': (93.312,114.988,-8.696)
O6: (94.678,112.252,-0.850)
O4': (93.128,115.698,-6.390)
C8: (94.797,113.547,-4.940)
C2: (93.687,115.644,-1.263)
C6: (94.430,113.312,-1.440)
C5: (94.517,113.593,-2.830)
C4: (94.194,114.858,-3.275)
P: (94.558,112.781,-9.401)
C4': (93.410,116.150,-7.744)
C2': (95.437,116.108,-6.507)
O2': (96.477,116.861,-5.917)
N1: (94.000,114.423,-0.720)
N2: (93.265,116.584,-0.402)
N3: (93.775,115.922,-2.555)
N7: (94.888,112.776,-3.891)
N9: (94.397,114.828,-4.637)
O5': (94.434,114.099,-8.519)
O3': (94.670,118.196,-7.522)
OP2: (95.436,111.799,-8.707)
C3': (94.788,116.793,-7.704)
C1': (94.246,115.948,-5.564)
C5': (93.312,114.988,-8.696)
O6: (94.678,112.252,-0.850)
O4': (93.128,115.698,-6.390)
C8: (94.797,113.547,-4.940)
C2: (93.687,115.644,-1.263)
C6: (94.430,113.312,-1.440)
C5: (94.517,113.593,-2.830)
C4: (94.194,114.858,-3.275)
P: (94.558,112.781,-9.401)
C4': (93.410,116.150,-7.744)
C2': (95.437,116.108,-6.507)
O2': (96.477,116.861,-5.917)
N1: (94.000,114.423,-0.720)
N2: (93.265,116.584,-0.402)
N3: (93.775,115.922,-2.555)
N7: (94.888,112.776,-3.891)
N9: (94.397,114.828,-4.637)
O5': (94.434,114.099,-8.519)
O3': (94.670,118.196,-7.522)
C4: (91.423,119.729,-1.092)
N3: (90.651,120.647,-1.761)
OP1: (90.883,120.410,5.789)
OP2: (89.887,118.419,4.526)
C2: (90.009,121.735,-1.231)
C1': (89.502,123.041,0.783)
C3': (87.766,122.263,2.171)
O5': (89.454,120.739,3.767)
O4': (89.948,123.112,2.128)
C5': (89.254,122.093,4.197)
P: (90.472,119.779,4.515)
C4': (88.824,122.931,3.026)
C2': (87.974,122.926,0.820)
O2': (87.396,124.214,0.767)
N1: (90.172,121.898,0.138)
O4: (91.929,118.796,-1.719)
O2: (89.349,122.497,-1.923)
C6: (90.939,121.012,0.866)
C5: (91.552,119.966,0.313)
O3': (86.468,122.461,2.704)
N3: (90.651,120.647,-1.761)
OP1: (90.883,120.410,5.789)
OP2: (89.887,118.419,4.526)
C2: (90.009,121.735,-1.231)
C1': (89.502,123.041,0.783)
C3': (87.766,122.263,2.171)
O5': (89.454,120.739,3.767)
O4': (89.948,123.112,2.128)
C5': (89.254,122.093,4.197)
P: (90.472,119.779,4.515)
C4': (88.824,122.931,3.026)
C2': (87.974,122.926,0.820)
O2': (87.396,124.214,0.767)
N1: (90.172,121.898,0.138)
O4: (91.929,118.796,-1.719)
O2: (89.349,122.497,-1.923)
C6: (90.939,121.012,0.866)
C5: (91.552,119.966,0.313)
O3': (86.468,122.461,2.704)
Image (generated by PyMOL):