Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJW:0234:0253
Extra
PDB:
ATOM 1 O3' C A 233 92.394 111.985 -9.665 1.00 50.48 O
ATOM 2 P G A 234 93.884 112.575 -9.678 1.00 52.94 P
ATOM 3 OP1 G A 234 94.205 113.031 -11.066 1.00 53.20 O
ATOM 4 OP2 G A 234 94.753 111.560 -9.011 1.00 48.86 O
ATOM 5 O5' G A 234 93.752 113.856 -8.747 1.00 50.43 O
ATOM 6 C5' G A 234 92.602 114.712 -8.856 1.00 51.03 C
ATOM 7 C4' G A 234 92.736 115.881 -7.922 1.00 52.12 C
ATOM 8 O4' G A 234 92.573 115.416 -6.553 1.00 54.07 O
ATOM 9 C3' G A 234 94.085 116.586 -7.983 1.00 52.33 C
ATOM 10 O3' G A 234 93.913 117.988 -7.831 1.00 51.81 O
ATOM 11 C2' G A 234 94.845 115.964 -6.814 1.00 52.26 C
ATOM 12 O2' G A 234 95.855 116.801 -6.287 1.00 51.55 O
ATOM 13 C1' G A 234 93.725 115.734 -5.800 1.00 52.42 C
ATOM 14 N9 G A 234 93.993 114.630 -4.882 1.00 51.97 N
ATOM 15 C8 G A 234 94.552 113.410 -5.188 1.00 51.94 C
ATOM 16 N7 G A 234 94.723 112.647 -4.143 1.00 53.13 N
ATOM 17 C5 G A 234 94.237 113.402 -3.082 1.00 53.83 C
ATOM 18 C6 G A 234 94.172 113.105 -1.694 1.00 53.28 C
ATOM 19 O6 G A 234 94.555 112.093 -1.105 1.00 53.98 O
ATOM 20 N1 G A 234 93.593 114.142 -0.976 1.00 53.46 N
ATOM 21 C2 G A 234 93.135 115.317 -1.514 1.00 53.55 C
ATOM 22 N2 G A 234 92.592 116.189 -0.646 1.00 53.48 N
ATOM 23 N3 G A 234 93.200 115.616 -2.804 1.00 53.09 N
ATOM 24 C4 G A 234 93.761 114.620 -3.524 1.00 53.02 C
ATOM 25 P A A 235 94.414 118.971 -8.996 1.00 50.74 P
ATOM 26 OP1 A A 235 93.911 118.443 -10.290 1.00 51.37 O
ATOM 27 OP2 A A 235 95.872 119.191 -8.808 1.00 49.45 O
ATOM 28 O5' A A 235 93.648 120.329 -8.704 1.00 48.22 O
TER
ATOM 1 O3' G B 252 91.249 119.535 3.361 1.00 45.66 O
ATOM 2 P U B 253 89.977 119.415 4.327 1.00 46.37 P
ATOM 3 OP1 U B 253 90.374 119.954 5.645 1.00 47.12 O
ATOM 4 OP2 U B 253 89.456 118.035 4.237 1.00 48.16 O
ATOM 5 O5' U B 253 88.905 120.382 3.661 1.00 45.57 O
ATOM 6 C5' U B 253 88.815 121.768 4.032 1.00 43.64 C
ATOM 7 C4' U B 253 88.364 122.584 2.849 1.00 43.38 C
ATOM 8 O4' U B 253 89.463 122.747 1.918 1.00 42.21 O
ATOM 9 C3' U B 253 87.274 121.929 2.025 1.00 43.84 C
ATOM 10 O3' U B 253 85.988 122.132 2.580 1.00 44.21 O
ATOM 11 C2' U B 253 87.450 122.586 0.668 1.00 43.37 C
ATOM 12 O2' U B 253 86.867 123.872 0.611 1.00 45.67 O
ATOM 13 C1' U B 253 88.975 122.696 0.588 1.00 41.83 C
ATOM 14 N1 U B 253 89.613 121.553 -0.084 1.00 41.15 N
ATOM 15 C2 U B 253 89.377 121.365 -1.447 1.00 41.76 C
ATOM 16 O2 U B 253 88.674 122.107 -2.120 1.00 42.26 O
ATOM 17 N3 U B 253 90.002 120.274 -1.991 1.00 39.60 N
ATOM 18 C4 U B 253 90.817 119.379 -1.344 1.00 39.69 C
ATOM 19 O4 U B 253 91.267 118.421 -1.965 1.00 41.08 O
ATOM 20 C5 U B 253 91.018 119.645 0.046 1.00 40.05 C
ATOM 21 C6 U B 253 90.423 120.692 0.613 1.00 38.84 C
ATOM 22 P G B 254 84.920 120.935 2.547 1.00 47.15 P
ATOM 23 OP1 G B 254 83.607 121.513 2.958 1.00 45.32 O
ATOM 24 OP2 G B 254 85.485 119.771 3.286 1.00 44.90 O
ATOM 25 O5' G B 254 84.836 120.520 1.010 1.00 46.34 O
TER
ATOM 2 P G A 234 93.884 112.575 -9.678 1.00 52.94 P
ATOM 3 OP1 G A 234 94.205 113.031 -11.066 1.00 53.20 O
ATOM 4 OP2 G A 234 94.753 111.560 -9.011 1.00 48.86 O
ATOM 5 O5' G A 234 93.752 113.856 -8.747 1.00 50.43 O
ATOM 6 C5' G A 234 92.602 114.712 -8.856 1.00 51.03 C
ATOM 7 C4' G A 234 92.736 115.881 -7.922 1.00 52.12 C
ATOM 8 O4' G A 234 92.573 115.416 -6.553 1.00 54.07 O
ATOM 9 C3' G A 234 94.085 116.586 -7.983 1.00 52.33 C
ATOM 10 O3' G A 234 93.913 117.988 -7.831 1.00 51.81 O
ATOM 11 C2' G A 234 94.845 115.964 -6.814 1.00 52.26 C
ATOM 12 O2' G A 234 95.855 116.801 -6.287 1.00 51.55 O
ATOM 13 C1' G A 234 93.725 115.734 -5.800 1.00 52.42 C
ATOM 14 N9 G A 234 93.993 114.630 -4.882 1.00 51.97 N
ATOM 15 C8 G A 234 94.552 113.410 -5.188 1.00 51.94 C
ATOM 16 N7 G A 234 94.723 112.647 -4.143 1.00 53.13 N
ATOM 17 C5 G A 234 94.237 113.402 -3.082 1.00 53.83 C
ATOM 18 C6 G A 234 94.172 113.105 -1.694 1.00 53.28 C
ATOM 19 O6 G A 234 94.555 112.093 -1.105 1.00 53.98 O
ATOM 20 N1 G A 234 93.593 114.142 -0.976 1.00 53.46 N
ATOM 21 C2 G A 234 93.135 115.317 -1.514 1.00 53.55 C
ATOM 22 N2 G A 234 92.592 116.189 -0.646 1.00 53.48 N
ATOM 23 N3 G A 234 93.200 115.616 -2.804 1.00 53.09 N
ATOM 24 C4 G A 234 93.761 114.620 -3.524 1.00 53.02 C
ATOM 25 P A A 235 94.414 118.971 -8.996 1.00 50.74 P
ATOM 26 OP1 A A 235 93.911 118.443 -10.290 1.00 51.37 O
ATOM 27 OP2 A A 235 95.872 119.191 -8.808 1.00 49.45 O
ATOM 28 O5' A A 235 93.648 120.329 -8.704 1.00 48.22 O
TER
ATOM 1 O3' G B 252 91.249 119.535 3.361 1.00 45.66 O
ATOM 2 P U B 253 89.977 119.415 4.327 1.00 46.37 P
ATOM 3 OP1 U B 253 90.374 119.954 5.645 1.00 47.12 O
ATOM 4 OP2 U B 253 89.456 118.035 4.237 1.00 48.16 O
ATOM 5 O5' U B 253 88.905 120.382 3.661 1.00 45.57 O
ATOM 6 C5' U B 253 88.815 121.768 4.032 1.00 43.64 C
ATOM 7 C4' U B 253 88.364 122.584 2.849 1.00 43.38 C
ATOM 8 O4' U B 253 89.463 122.747 1.918 1.00 42.21 O
ATOM 9 C3' U B 253 87.274 121.929 2.025 1.00 43.84 C
ATOM 10 O3' U B 253 85.988 122.132 2.580 1.00 44.21 O
ATOM 11 C2' U B 253 87.450 122.586 0.668 1.00 43.37 C
ATOM 12 O2' U B 253 86.867 123.872 0.611 1.00 45.67 O
ATOM 13 C1' U B 253 88.975 122.696 0.588 1.00 41.83 C
ATOM 14 N1 U B 253 89.613 121.553 -0.084 1.00 41.15 N
ATOM 15 C2 U B 253 89.377 121.365 -1.447 1.00 41.76 C
ATOM 16 O2 U B 253 88.674 122.107 -2.120 1.00 42.26 O
ATOM 17 N3 U B 253 90.002 120.274 -1.991 1.00 39.60 N
ATOM 18 C4 U B 253 90.817 119.379 -1.344 1.00 39.69 C
ATOM 19 O4 U B 253 91.267 118.421 -1.965 1.00 41.08 O
ATOM 20 C5 U B 253 91.018 119.645 0.046 1.00 40.05 C
ATOM 21 C6 U B 253 90.423 120.692 0.613 1.00 38.84 C
ATOM 22 P G B 254 84.920 120.935 2.547 1.00 47.15 P
ATOM 23 OP1 G B 254 83.607 121.513 2.958 1.00 45.32 O
ATOM 24 OP2 G B 254 85.485 119.771 3.286 1.00 44.90 O
ATOM 25 O5' G B 254 84.836 120.520 1.010 1.00 46.34 O
TER
Atoms:
OP1: (94.205,113.031,-11.066)
OP2: (94.753,111.560,-9.011)
C3': (94.085,116.586,-7.983)
C1': (93.725,115.734,-5.800)
C5': (92.602,114.712,-8.856)
O6: (94.555,112.093,-1.105)
O4': (92.573,115.416,-6.553)
C8: (94.552,113.410,-5.188)
C2: (93.135,115.317,-1.514)
C6: (94.172,113.105,-1.694)
C5: (94.237,113.402,-3.082)
C4: (93.761,114.620,-3.524)
P: (93.884,112.575,-9.678)
C4': (92.736,115.881,-7.922)
C2': (94.845,115.964,-6.814)
O2': (95.855,116.801,-6.287)
N1: (93.593,114.142,-0.976)
N2: (92.592,116.189,-0.646)
N3: (93.200,115.616,-2.804)
N7: (94.723,112.647,-4.143)
N9: (93.993,114.630,-4.882)
O5': (93.752,113.856,-8.747)
O3': (93.913,117.988,-7.831)
OP2: (94.753,111.560,-9.011)
C3': (94.085,116.586,-7.983)
C1': (93.725,115.734,-5.800)
C5': (92.602,114.712,-8.856)
O6: (94.555,112.093,-1.105)
O4': (92.573,115.416,-6.553)
C8: (94.552,113.410,-5.188)
C2: (93.135,115.317,-1.514)
C6: (94.172,113.105,-1.694)
C5: (94.237,113.402,-3.082)
C4: (93.761,114.620,-3.524)
P: (93.884,112.575,-9.678)
C4': (92.736,115.881,-7.922)
C2': (94.845,115.964,-6.814)
O2': (95.855,116.801,-6.287)
N1: (93.593,114.142,-0.976)
N2: (92.592,116.189,-0.646)
N3: (93.200,115.616,-2.804)
N7: (94.723,112.647,-4.143)
N9: (93.993,114.630,-4.882)
O5': (93.752,113.856,-8.747)
O3': (93.913,117.988,-7.831)
C4: (90.817,119.379,-1.344)
N3: (90.002,120.274,-1.991)
OP1: (90.374,119.954,5.645)
OP2: (89.456,118.035,4.237)
C2: (89.377,121.365,-1.447)
C1': (88.975,122.696,0.588)
C3': (87.274,121.929,2.025)
O5': (88.905,120.382,3.661)
O4': (89.463,122.747,1.918)
C5': (88.815,121.768,4.032)
P: (89.977,119.415,4.327)
C4': (88.364,122.584,2.849)
C2': (87.450,122.586,0.668)
O2': (86.867,123.872,0.611)
N1: (89.613,121.553,-0.084)
O4: (91.267,118.421,-1.965)
O2: (88.674,122.107,-2.120)
C6: (90.423,120.692,0.613)
C5: (91.018,119.645,0.046)
O3': (85.988,122.132,2.580)
N3: (90.002,120.274,-1.991)
OP1: (90.374,119.954,5.645)
OP2: (89.456,118.035,4.237)
C2: (89.377,121.365,-1.447)
C1': (88.975,122.696,0.588)
C3': (87.274,121.929,2.025)
O5': (88.905,120.382,3.661)
O4': (89.463,122.747,1.918)
C5': (88.815,121.768,4.032)
P: (89.977,119.415,4.327)
C4': (88.364,122.584,2.849)
C2': (87.450,122.586,0.668)
O2': (86.867,123.872,0.611)
N1: (89.613,121.553,-0.084)
O4: (91.267,118.421,-1.965)
O2: (88.674,122.107,-2.120)
C6: (90.423,120.692,0.613)
C5: (91.018,119.645,0.046)
O3': (85.988,122.132,2.580)
Image (generated by PyMOL):