Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1501:1480
Extra
PDB:
ATOM 1 O3' U A 500 57.387 -8.109 -42.404 1.00106.49 O
ATOM 2 P A A 501 58.024 -8.205 -43.889 1.00 95.49 P
ATOM 3 OP1 A A 501 57.506 -9.448 -44.520 1.00 95.98 O
ATOM 4 OP2 A A 501 59.501 -8.035 -43.746 1.00 95.37 O
ATOM 5 O5' A A 501 57.401 -6.941 -44.616 1.00 95.94 O
ATOM 6 C5' A A 501 57.786 -5.618 -44.266 1.00 95.66 C
ATOM 7 C4' A A 501 57.107 -4.629 -45.167 1.00 96.27 C
ATOM 8 O4' A A 501 55.700 -4.956 -45.223 1.00 96.34 O
ATOM 9 C3' A A 501 57.211 -3.156 -44.767 1.00 95.97 C
ATOM 10 O3' A A 501 57.456 -2.358 -45.928 1.00 96.76 O
ATOM 11 C2' A A 501 55.824 -2.835 -44.209 1.00 95.62 C
ATOM 12 O2' A A 501 55.398 -1.505 -44.431 1.00 95.78 O
ATOM 13 C1' A A 501 54.925 -3.825 -44.938 1.00 96.15 C
ATOM 14 N9 A A 501 53.811 -4.272 -44.137 1.00 95.64 N
ATOM 15 C8 A A 501 53.541 -3.966 -42.840 1.00 94.76 C
ATOM 16 N7 A A 501 52.456 -4.543 -42.407 1.00 94.52 N
ATOM 17 C5 A A 501 52.011 -5.278 -43.500 1.00 95.29 C
ATOM 18 C6 A A 501 50.904 -6.119 -43.698 1.00 95.49 C
ATOM 19 N6 A A 501 49.999 -6.372 -42.744 1.00 94.88 N
ATOM 20 N1 A A 501 50.761 -6.694 -44.912 1.00 96.34 N
ATOM 21 C2 A A 501 51.672 -6.430 -45.849 1.00 96.94 C
ATOM 22 N3 A A 501 52.754 -5.661 -45.787 1.00 96.84 N
ATOM 23 C4 A A 501 52.858 -5.126 -44.568 1.00 95.98 C
ATOM 24 P U A 502 58.914 -1.724 -46.187 1.00117.52 P
ATOM 25 OP1 U A 502 58.730 -0.616 -47.159 1.00118.20 O
ATOM 26 OP2 U A 502 59.826 -2.846 -46.535 1.00117.75 O
ATOM 27 O5' U A 502 59.306 -1.136 -44.766 1.00116.54 O
TER
ATOM 1 O3' G B 479 47.409 -0.693 -35.500 1.00 95.95 O
ATOM 2 P U B 480 48.121 0.645 -34.959 1.00 81.87 P
ATOM 3 OP1 U B 480 48.627 0.346 -33.582 1.00 80.98 O
ATOM 4 OP2 U B 480 47.143 1.761 -35.133 1.00 82.06 O
ATOM 5 O5' U B 480 49.347 0.804 -35.989 1.00 82.46 O
ATOM 6 C5' U B 480 50.585 1.364 -35.592 1.00 82.17 C
ATOM 7 C4' U B 480 51.688 1.052 -36.584 1.00 82.74 C
ATOM 8 O4' U B 480 51.944 -0.374 -36.620 1.00 82.73 O
ATOM 9 C3' U B 480 51.427 1.399 -38.044 1.00 83.70 C
ATOM 10 O3' U B 480 51.580 2.768 -38.337 1.00 83.92 O
ATOM 11 C2' U B 480 52.421 0.510 -38.784 1.00 84.12 C
ATOM 12 O2' U B 480 53.716 1.085 -38.795 1.00 84.09 O
ATOM 13 C1' U B 480 52.440 -0.736 -37.898 1.00 83.53 C
ATOM 14 N1 U B 480 51.589 -1.783 -38.450 1.00 83.91 N
ATOM 15 C2 U B 480 52.175 -2.549 -39.416 1.00 84.51 C
ATOM 16 O2 U B 480 53.334 -2.387 -39.739 1.00 84.68 O
ATOM 17 N3 U B 480 51.374 -3.513 -39.956 1.00 84.90 N
ATOM 18 C4 U B 480 50.054 -3.760 -39.630 1.00 84.75 C
ATOM 19 O4 U B 480 49.437 -4.671 -40.198 1.00 85.16 O
ATOM 20 C5 U B 480 49.521 -2.894 -38.620 1.00 84.10 C
ATOM 21 C6 U B 480 50.282 -1.944 -38.074 1.00 83.72 C
ATOM 22 P A B 481 50.792 3.398 -39.577 1.00 96.93 P
ATOM 23 OP1 A B 481 51.089 4.847 -39.594 1.00 96.99 O
ATOM 24 OP2 A B 481 49.381 2.957 -39.459 1.00 96.91 O
ATOM 25 O5' A B 481 51.480 2.696 -40.823 1.00 97.70 O
TER
ATOM 2 P A A 501 58.024 -8.205 -43.889 1.00 95.49 P
ATOM 3 OP1 A A 501 57.506 -9.448 -44.520 1.00 95.98 O
ATOM 4 OP2 A A 501 59.501 -8.035 -43.746 1.00 95.37 O
ATOM 5 O5' A A 501 57.401 -6.941 -44.616 1.00 95.94 O
ATOM 6 C5' A A 501 57.786 -5.618 -44.266 1.00 95.66 C
ATOM 7 C4' A A 501 57.107 -4.629 -45.167 1.00 96.27 C
ATOM 8 O4' A A 501 55.700 -4.956 -45.223 1.00 96.34 O
ATOM 9 C3' A A 501 57.211 -3.156 -44.767 1.00 95.97 C
ATOM 10 O3' A A 501 57.456 -2.358 -45.928 1.00 96.76 O
ATOM 11 C2' A A 501 55.824 -2.835 -44.209 1.00 95.62 C
ATOM 12 O2' A A 501 55.398 -1.505 -44.431 1.00 95.78 O
ATOM 13 C1' A A 501 54.925 -3.825 -44.938 1.00 96.15 C
ATOM 14 N9 A A 501 53.811 -4.272 -44.137 1.00 95.64 N
ATOM 15 C8 A A 501 53.541 -3.966 -42.840 1.00 94.76 C
ATOM 16 N7 A A 501 52.456 -4.543 -42.407 1.00 94.52 N
ATOM 17 C5 A A 501 52.011 -5.278 -43.500 1.00 95.29 C
ATOM 18 C6 A A 501 50.904 -6.119 -43.698 1.00 95.49 C
ATOM 19 N6 A A 501 49.999 -6.372 -42.744 1.00 94.88 N
ATOM 20 N1 A A 501 50.761 -6.694 -44.912 1.00 96.34 N
ATOM 21 C2 A A 501 51.672 -6.430 -45.849 1.00 96.94 C
ATOM 22 N3 A A 501 52.754 -5.661 -45.787 1.00 96.84 N
ATOM 23 C4 A A 501 52.858 -5.126 -44.568 1.00 95.98 C
ATOM 24 P U A 502 58.914 -1.724 -46.187 1.00117.52 P
ATOM 25 OP1 U A 502 58.730 -0.616 -47.159 1.00118.20 O
ATOM 26 OP2 U A 502 59.826 -2.846 -46.535 1.00117.75 O
ATOM 27 O5' U A 502 59.306 -1.136 -44.766 1.00116.54 O
TER
ATOM 1 O3' G B 479 47.409 -0.693 -35.500 1.00 95.95 O
ATOM 2 P U B 480 48.121 0.645 -34.959 1.00 81.87 P
ATOM 3 OP1 U B 480 48.627 0.346 -33.582 1.00 80.98 O
ATOM 4 OP2 U B 480 47.143 1.761 -35.133 1.00 82.06 O
ATOM 5 O5' U B 480 49.347 0.804 -35.989 1.00 82.46 O
ATOM 6 C5' U B 480 50.585 1.364 -35.592 1.00 82.17 C
ATOM 7 C4' U B 480 51.688 1.052 -36.584 1.00 82.74 C
ATOM 8 O4' U B 480 51.944 -0.374 -36.620 1.00 82.73 O
ATOM 9 C3' U B 480 51.427 1.399 -38.044 1.00 83.70 C
ATOM 10 O3' U B 480 51.580 2.768 -38.337 1.00 83.92 O
ATOM 11 C2' U B 480 52.421 0.510 -38.784 1.00 84.12 C
ATOM 12 O2' U B 480 53.716 1.085 -38.795 1.00 84.09 O
ATOM 13 C1' U B 480 52.440 -0.736 -37.898 1.00 83.53 C
ATOM 14 N1 U B 480 51.589 -1.783 -38.450 1.00 83.91 N
ATOM 15 C2 U B 480 52.175 -2.549 -39.416 1.00 84.51 C
ATOM 16 O2 U B 480 53.334 -2.387 -39.739 1.00 84.68 O
ATOM 17 N3 U B 480 51.374 -3.513 -39.956 1.00 84.90 N
ATOM 18 C4 U B 480 50.054 -3.760 -39.630 1.00 84.75 C
ATOM 19 O4 U B 480 49.437 -4.671 -40.198 1.00 85.16 O
ATOM 20 C5 U B 480 49.521 -2.894 -38.620 1.00 84.10 C
ATOM 21 C6 U B 480 50.282 -1.944 -38.074 1.00 83.72 C
ATOM 22 P A B 481 50.792 3.398 -39.577 1.00 96.93 P
ATOM 23 OP1 A B 481 51.089 4.847 -39.594 1.00 96.99 O
ATOM 24 OP2 A B 481 49.381 2.957 -39.459 1.00 96.91 O
ATOM 25 O5' A B 481 51.480 2.696 -40.823 1.00 97.70 O
TER
Atoms:
OP1: (57.506,-9.448,-44.520)
OP2: (59.501,-8.035,-43.746)
C3': (57.211,-3.156,-44.767)
C1': (54.925,-3.825,-44.938)
C5': (57.786,-5.618,-44.266)
O4': (55.700,-4.956,-45.223)
C8: (53.541,-3.966,-42.840)
O2': (55.398,-1.505,-44.431)
C6: (50.904,-6.119,-43.698)
C5: (52.011,-5.278,-43.500)
C4: (52.858,-5.126,-44.568)
P: (58.024,-8.205,-43.889)
C4': (57.107,-4.629,-45.167)
C2': (55.824,-2.835,-44.209)
C2: (51.672,-6.430,-45.849)
N1: (50.761,-6.694,-44.912)
N3: (52.754,-5.661,-45.787)
N6: (49.999,-6.372,-42.744)
N7: (52.456,-4.543,-42.407)
N9: (53.811,-4.272,-44.137)
O5': (57.401,-6.941,-44.616)
O3': (57.456,-2.358,-45.928)
OP2: (59.501,-8.035,-43.746)
C3': (57.211,-3.156,-44.767)
C1': (54.925,-3.825,-44.938)
C5': (57.786,-5.618,-44.266)
O4': (55.700,-4.956,-45.223)
C8: (53.541,-3.966,-42.840)
O2': (55.398,-1.505,-44.431)
C6: (50.904,-6.119,-43.698)
C5: (52.011,-5.278,-43.500)
C4: (52.858,-5.126,-44.568)
P: (58.024,-8.205,-43.889)
C4': (57.107,-4.629,-45.167)
C2': (55.824,-2.835,-44.209)
C2: (51.672,-6.430,-45.849)
N1: (50.761,-6.694,-44.912)
N3: (52.754,-5.661,-45.787)
N6: (49.999,-6.372,-42.744)
N7: (52.456,-4.543,-42.407)
N9: (53.811,-4.272,-44.137)
O5': (57.401,-6.941,-44.616)
O3': (57.456,-2.358,-45.928)
C4: (50.054,-3.760,-39.630)
N3: (51.374,-3.513,-39.956)
OP1: (48.627,0.346,-33.582)
OP2: (47.143,1.761,-35.133)
C2: (52.175,-2.549,-39.416)
C1': (52.440,-0.736,-37.898)
C3': (51.427,1.399,-38.044)
O5': (49.347,0.804,-35.989)
O4': (51.944,-0.374,-36.620)
C5': (50.585,1.364,-35.592)
P: (48.121,0.645,-34.959)
C4': (51.688,1.052,-36.584)
C2': (52.421,0.510,-38.784)
O2': (53.716,1.085,-38.795)
N1: (51.589,-1.783,-38.450)
O4: (49.437,-4.671,-40.198)
O2: (53.334,-2.387,-39.739)
C6: (50.282,-1.944,-38.074)
C5: (49.521,-2.894,-38.620)
O3': (51.580,2.768,-38.337)
N3: (51.374,-3.513,-39.956)
OP1: (48.627,0.346,-33.582)
OP2: (47.143,1.761,-35.133)
C2: (52.175,-2.549,-39.416)
C1': (52.440,-0.736,-37.898)
C3': (51.427,1.399,-38.044)
O5': (49.347,0.804,-35.989)
O4': (51.944,-0.374,-36.620)
C5': (50.585,1.364,-35.592)
P: (48.121,0.645,-34.959)
C4': (51.688,1.052,-36.584)
C2': (52.421,0.510,-38.784)
O2': (53.716,1.085,-38.795)
N1: (51.589,-1.783,-38.450)
O4: (49.437,-4.671,-40.198)
O2: (53.334,-2.387,-39.739)
C6: (50.282,-1.944,-38.074)
C5: (49.521,-2.894,-38.620)
O3': (51.580,2.768,-38.337)
Image (generated by PyMOL):