Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:X30:X125
Extra
PDB:
ATOM 1 O3' A A 29 -7.482 -5.918 13.288 1.00 39.07 O
ATOM 2 P G A 30 -8.711 -6.907 13.586 1.00 40.41 P
ATOM 3 OP1 G A 30 -8.784 -7.732 12.353 1.00 47.70 O
ATOM 4 OP2 G A 30 -9.880 -6.074 13.959 1.00 38.57 O
ATOM 5 O5' G A 30 -8.306 -7.759 14.880 1.00 44.77 O
ATOM 6 C5' G A 30 -7.118 -8.527 15.000 1.00 39.17 C
ATOM 7 C4' G A 30 -6.632 -8.632 16.432 1.00 36.22 C
ATOM 8 O4' G A 30 -6.709 -7.344 17.093 1.00 36.76 O
ATOM 9 C3' G A 30 -7.365 -9.564 17.391 1.00 32.34 C
ATOM 10 O3' G A 30 -7.007 -10.917 17.188 1.00 31.79 O
ATOM 11 C2' G A 30 -6.910 -9.032 18.747 1.00 30.47 C
ATOM 12 O2' G A 30 -5.583 -9.443 19.023 1.00 30.70 O
ATOM 13 C1' G A 30 -6.852 -7.532 18.481 1.00 31.97 C
ATOM 14 N9 G A 30 -8.056 -6.830 18.941 1.00 28.62 N
ATOM 15 C8 G A 30 -9.065 -6.330 18.161 1.00 31.09 C
ATOM 16 N7 G A 30 -9.987 -5.738 18.869 1.00 34.78 N
ATOM 17 C5 G A 30 -9.554 -5.857 20.186 1.00 29.33 C
ATOM 18 C6 G A 30 -10.155 -5.408 21.388 1.00 31.88 C
ATOM 19 O6 G A 30 -11.221 -4.796 21.532 1.00 29.85 O
ATOM 20 N1 G A 30 -9.385 -5.747 22.493 1.00 27.36 N
ATOM 21 C2 G A 30 -8.190 -6.418 22.456 1.00 25.59 C
ATOM 22 N2 G A 30 -7.613 -6.631 23.655 1.00 24.35 N
ATOM 23 N3 G A 30 -7.616 -6.844 21.340 1.00 25.36 N
ATOM 24 C4 G A 30 -8.354 -6.524 20.250 1.00 28.72 C
ATOM 25 P A A 31 -7.773 -12.151 17.889 1.00 34.61 P
ATOM 26 OP1 A A 31 -7.393 -13.295 17.026 1.00 35.46 O
ATOM 27 OP2 A A 31 -9.201 -11.797 18.128 1.00 31.24 O
ATOM 28 O5' A A 31 -7.016 -12.260 19.299 1.00 28.00 O
TER
ATOM 1 O3' A B 124 -8.095 -6.173 30.496 1.00 21.92 O
ATOM 2 P U B 125 -6.951 -5.066 30.278 1.00 23.53 P
ATOM 3 OP1 U B 125 -7.064 -4.294 31.550 1.00 24.38 O
ATOM 4 OP2 U B 125 -7.161 -4.418 28.963 1.00 26.40 O
ATOM 5 O5' U B 125 -5.579 -5.858 30.288 1.00 21.95 O
ATOM 6 C5' U B 125 -5.138 -6.541 31.451 1.00 25.63 C
ATOM 7 C4' U B 125 -4.032 -7.504 31.103 1.00 24.85 C
ATOM 8 O4' U B 125 -4.530 -8.490 30.170 1.00 24.85 O
ATOM 9 C3' U B 125 -2.829 -6.899 30.400 1.00 23.98 C
ATOM 10 O3' U B 125 -1.923 -6.317 31.314 1.00 27.26 O
ATOM 11 C2' U B 125 -2.249 -8.081 29.644 1.00 27.28 C
ATOM 12 O2' U B 125 -1.473 -8.905 30.500 1.00 29.81 O
ATOM 13 C1' U B 125 -3.509 -8.856 29.273 1.00 24.56 C
ATOM 14 N1 U B 125 -3.937 -8.543 27.907 1.00 25.27 N
ATOM 15 C2 U B 125 -3.256 -9.215 26.920 1.00 24.50 C
ATOM 16 O2 U B 125 -2.366 -10.005 27.175 1.00 25.30 O
ATOM 17 N3 U B 125 -3.653 -8.923 25.648 1.00 23.28 N
ATOM 18 C4 U B 125 -4.650 -8.035 25.290 1.00 24.22 C
ATOM 19 O4 U B 125 -4.902 -7.878 24.101 1.00 25.39 O
ATOM 20 C5 U B 125 -5.317 -7.377 26.379 1.00 25.18 C
ATOM 21 C6 U B 125 -4.937 -7.641 27.638 1.00 22.80 C
ATOM 22 P G B 126 -1.620 -4.745 31.240 1.00 32.46 P
ATOM 23 OP1 G B 126 -1.069 -4.502 32.593 1.00 36.68 O
ATOM 24 OP2 G B 126 -2.826 -4.003 30.786 1.00 30.17 O
ATOM 25 O5' G B 126 -0.530 -4.591 30.084 1.00 33.50 O
TER
ATOM 2 P G A 30 -8.711 -6.907 13.586 1.00 40.41 P
ATOM 3 OP1 G A 30 -8.784 -7.732 12.353 1.00 47.70 O
ATOM 4 OP2 G A 30 -9.880 -6.074 13.959 1.00 38.57 O
ATOM 5 O5' G A 30 -8.306 -7.759 14.880 1.00 44.77 O
ATOM 6 C5' G A 30 -7.118 -8.527 15.000 1.00 39.17 C
ATOM 7 C4' G A 30 -6.632 -8.632 16.432 1.00 36.22 C
ATOM 8 O4' G A 30 -6.709 -7.344 17.093 1.00 36.76 O
ATOM 9 C3' G A 30 -7.365 -9.564 17.391 1.00 32.34 C
ATOM 10 O3' G A 30 -7.007 -10.917 17.188 1.00 31.79 O
ATOM 11 C2' G A 30 -6.910 -9.032 18.747 1.00 30.47 C
ATOM 12 O2' G A 30 -5.583 -9.443 19.023 1.00 30.70 O
ATOM 13 C1' G A 30 -6.852 -7.532 18.481 1.00 31.97 C
ATOM 14 N9 G A 30 -8.056 -6.830 18.941 1.00 28.62 N
ATOM 15 C8 G A 30 -9.065 -6.330 18.161 1.00 31.09 C
ATOM 16 N7 G A 30 -9.987 -5.738 18.869 1.00 34.78 N
ATOM 17 C5 G A 30 -9.554 -5.857 20.186 1.00 29.33 C
ATOM 18 C6 G A 30 -10.155 -5.408 21.388 1.00 31.88 C
ATOM 19 O6 G A 30 -11.221 -4.796 21.532 1.00 29.85 O
ATOM 20 N1 G A 30 -9.385 -5.747 22.493 1.00 27.36 N
ATOM 21 C2 G A 30 -8.190 -6.418 22.456 1.00 25.59 C
ATOM 22 N2 G A 30 -7.613 -6.631 23.655 1.00 24.35 N
ATOM 23 N3 G A 30 -7.616 -6.844 21.340 1.00 25.36 N
ATOM 24 C4 G A 30 -8.354 -6.524 20.250 1.00 28.72 C
ATOM 25 P A A 31 -7.773 -12.151 17.889 1.00 34.61 P
ATOM 26 OP1 A A 31 -7.393 -13.295 17.026 1.00 35.46 O
ATOM 27 OP2 A A 31 -9.201 -11.797 18.128 1.00 31.24 O
ATOM 28 O5' A A 31 -7.016 -12.260 19.299 1.00 28.00 O
TER
ATOM 1 O3' A B 124 -8.095 -6.173 30.496 1.00 21.92 O
ATOM 2 P U B 125 -6.951 -5.066 30.278 1.00 23.53 P
ATOM 3 OP1 U B 125 -7.064 -4.294 31.550 1.00 24.38 O
ATOM 4 OP2 U B 125 -7.161 -4.418 28.963 1.00 26.40 O
ATOM 5 O5' U B 125 -5.579 -5.858 30.288 1.00 21.95 O
ATOM 6 C5' U B 125 -5.138 -6.541 31.451 1.00 25.63 C
ATOM 7 C4' U B 125 -4.032 -7.504 31.103 1.00 24.85 C
ATOM 8 O4' U B 125 -4.530 -8.490 30.170 1.00 24.85 O
ATOM 9 C3' U B 125 -2.829 -6.899 30.400 1.00 23.98 C
ATOM 10 O3' U B 125 -1.923 -6.317 31.314 1.00 27.26 O
ATOM 11 C2' U B 125 -2.249 -8.081 29.644 1.00 27.28 C
ATOM 12 O2' U B 125 -1.473 -8.905 30.500 1.00 29.81 O
ATOM 13 C1' U B 125 -3.509 -8.856 29.273 1.00 24.56 C
ATOM 14 N1 U B 125 -3.937 -8.543 27.907 1.00 25.27 N
ATOM 15 C2 U B 125 -3.256 -9.215 26.920 1.00 24.50 C
ATOM 16 O2 U B 125 -2.366 -10.005 27.175 1.00 25.30 O
ATOM 17 N3 U B 125 -3.653 -8.923 25.648 1.00 23.28 N
ATOM 18 C4 U B 125 -4.650 -8.035 25.290 1.00 24.22 C
ATOM 19 O4 U B 125 -4.902 -7.878 24.101 1.00 25.39 O
ATOM 20 C5 U B 125 -5.317 -7.377 26.379 1.00 25.18 C
ATOM 21 C6 U B 125 -4.937 -7.641 27.638 1.00 22.80 C
ATOM 22 P G B 126 -1.620 -4.745 31.240 1.00 32.46 P
ATOM 23 OP1 G B 126 -1.069 -4.502 32.593 1.00 36.68 O
ATOM 24 OP2 G B 126 -2.826 -4.003 30.786 1.00 30.17 O
ATOM 25 O5' G B 126 -0.530 -4.591 30.084 1.00 33.50 O
TER
Atoms:
OP1: (-8.784,-7.732,12.353)
OP2: (-9.880,-6.074,13.959)
C3': (-7.365,-9.564,17.391)
C1': (-6.852,-7.532,18.481)
C5': (-7.118,-8.527,15.000)
O6: (-11.221,-4.796,21.532)
O4': (-6.709,-7.344,17.093)
C8: (-9.065,-6.330,18.161)
C2: (-8.190,-6.418,22.456)
C6: (-10.155,-5.408,21.388)
C5: (-9.554,-5.857,20.186)
C4: (-8.354,-6.524,20.250)
P: (-8.711,-6.907,13.586)
C4': (-6.632,-8.632,16.432)
C2': (-6.910,-9.032,18.747)
O2': (-5.583,-9.443,19.023)
N1: (-9.385,-5.747,22.493)
N2: (-7.613,-6.631,23.655)
N3: (-7.616,-6.844,21.340)
N7: (-9.987,-5.738,18.869)
N9: (-8.056,-6.830,18.941)
O5': (-8.306,-7.759,14.880)
O3': (-7.007,-10.917,17.188)
OP2: (-9.880,-6.074,13.959)
C3': (-7.365,-9.564,17.391)
C1': (-6.852,-7.532,18.481)
C5': (-7.118,-8.527,15.000)
O6: (-11.221,-4.796,21.532)
O4': (-6.709,-7.344,17.093)
C8: (-9.065,-6.330,18.161)
C2: (-8.190,-6.418,22.456)
C6: (-10.155,-5.408,21.388)
C5: (-9.554,-5.857,20.186)
C4: (-8.354,-6.524,20.250)
P: (-8.711,-6.907,13.586)
C4': (-6.632,-8.632,16.432)
C2': (-6.910,-9.032,18.747)
O2': (-5.583,-9.443,19.023)
N1: (-9.385,-5.747,22.493)
N2: (-7.613,-6.631,23.655)
N3: (-7.616,-6.844,21.340)
N7: (-9.987,-5.738,18.869)
N9: (-8.056,-6.830,18.941)
O5': (-8.306,-7.759,14.880)
O3': (-7.007,-10.917,17.188)
C4: (-4.650,-8.035,25.290)
N3: (-3.653,-8.923,25.648)
OP1: (-7.064,-4.294,31.550)
OP2: (-7.161,-4.418,28.963)
C2: (-3.256,-9.215,26.920)
C1': (-3.509,-8.856,29.273)
C3': (-2.829,-6.899,30.400)
O5': (-5.579,-5.858,30.288)
O4': (-4.530,-8.490,30.170)
C5': (-5.138,-6.541,31.451)
P: (-6.951,-5.066,30.278)
C4': (-4.032,-7.504,31.103)
C2': (-2.249,-8.081,29.644)
O2': (-1.473,-8.905,30.500)
N1: (-3.937,-8.543,27.907)
O4: (-4.902,-7.878,24.101)
O2: (-2.366,-10.005,27.175)
C6: (-4.937,-7.641,27.638)
C5: (-5.317,-7.377,26.379)
O3': (-1.923,-6.317,31.314)
N3: (-3.653,-8.923,25.648)
OP1: (-7.064,-4.294,31.550)
OP2: (-7.161,-4.418,28.963)
C2: (-3.256,-9.215,26.920)
C1': (-3.509,-8.856,29.273)
C3': (-2.829,-6.899,30.400)
O5': (-5.579,-5.858,30.288)
O4': (-4.530,-8.490,30.170)
C5': (-5.138,-6.541,31.451)
P: (-6.951,-5.066,30.278)
C4': (-4.032,-7.504,31.103)
C2': (-2.249,-8.081,29.644)
O2': (-1.473,-8.905,30.500)
N1: (-3.937,-8.543,27.907)
O4: (-4.902,-7.878,24.101)
O2: (-2.366,-10.005,27.175)
C6: (-4.937,-7.641,27.638)
C5: (-5.317,-7.377,26.379)
O3': (-1.923,-6.317,31.314)
Image (generated by PyMOL):