Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2VUQ:A5:B2
Extra
PDB:
ATOM 1 O3' U A 4 10.680 9.469 -6.784 1.00 7.86 O
ATOM 2 P G A 5 9.306 8.844 -7.334 1.00 9.74 P
ATOM 3 OP1 G A 5 9.375 9.003 -8.807 1.00 10.88 O
ATOM 4 OP2 G A 5 8.132 9.354 -6.573 1.00 12.33 O
ATOM 5 O5' G A 5 9.380 7.288 -6.941 1.00 9.00 O
ATOM 6 C5' G A 5 10.319 6.406 -7.537 1.00 8.43 C
ATOM 7 C4' G A 5 10.202 5.027 -6.915 1.00 9.68 C
ATOM 8 O4' G A 5 10.580 5.067 -5.518 1.00 9.72 O
ATOM 9 C3' G A 5 8.818 4.387 -6.881 1.00 9.65 C
ATOM 10 O3' G A 5 8.489 3.874 -8.160 1.00 10.20 O
ATOM 11 C2' G A 5 9.038 3.260 -5.856 1.00 9.74 C
ATOM 12 O2' G A 5 9.838 2.214 -6.346 1.00 11.90 O
ATOM 13 C1' G A 5 9.829 4.079 -4.834 1.00 9.52 C
ATOM 14 N9 G A 5 8.939 4.807 -3.934 1.00 8.83 N
ATOM 15 C8 G A 5 8.581 6.131 -3.947 1.00 8.50 C
ATOM 16 N7 G A 5 7.771 6.506 -3.004 1.00 10.63 N
ATOM 17 C5 G A 5 7.541 5.339 -2.313 1.00 8.03 C
ATOM 18 C6 G A 5 6.734 5.092 -1.172 1.00 9.45 C
ATOM 19 O6 G A 5 6.036 5.886 -0.552 1.00 10.37 O
ATOM 20 N1 G A 5 6.762 3.759 -0.775 1.00 8.91 N
ATOM 21 C2 G A 5 7.505 2.778 -1.382 1.00 9.14 C
ATOM 22 N2 G A 5 7.410 1.565 -0.851 1.00 9.58 N
ATOM 23 N3 G A 5 8.272 2.994 -2.442 1.00 8.59 N
ATOM 24 C4 G A 5 8.252 4.289 -2.853 1.00 8.95 C
ATOM 25 P G A 6 6.968 3.855 -8.660 1.00 11.55 P
ATOM 26 OP1 G A 6 6.996 3.292 -10.029 1.00 13.54 O
ATOM 27 OP2 G A 6 6.340 5.178 -8.489 1.00 12.61 O
ATOM 28 O5' G A 6 6.248 2.833 -7.661 1.00 9.74 O
TER
ATOM 1 O3' C B 1 5.984 -0.622 6.568 1.00 12.02 O
ATOM 2 P A B 2 7.160 0.233 7.269 1.00 12.14 P
ATOM 3 OP1 A B 2 7.557 -0.571 8.439 1.00 13.02 O
ATOM 4 OP2 A B 2 6.844 1.652 7.472 1.00 13.86 O
ATOM 5 O5' A B 2 8.280 0.197 6.127 1.00 9.63 O
ATOM 6 C5' A B 2 8.742 -1.084 5.655 1.00 9.16 C
ATOM 7 C4' A B 2 9.411 -0.871 4.315 1.00 8.13 C
ATOM 8 O4' A B 2 8.519 -0.204 3.386 1.00 7.52 O
ATOM 9 C3' A B 2 10.653 0.008 4.354 1.00 7.46 C
ATOM 10 O3' A B 2 11.759 -0.754 4.841 1.00 8.20 O
ATOM 11 C2' A B 2 10.757 0.337 2.878 1.00 6.50 C
ATOM 12 O2' A B 2 11.204 -0.810 2.189 1.00 7.60 O
ATOM 13 C1' A B 2 9.310 0.634 2.568 1.00 6.47 C
ATOM 14 N9 A B 2 8.880 2.029 2.770 1.00 6.28 N
ATOM 15 C8 A B 2 8.097 2.510 3.782 1.00 6.87 C
ATOM 16 N7 A B 2 7.834 3.793 3.684 1.00 6.15 N
ATOM 17 C5 A B 2 8.485 4.180 2.524 1.00 5.72 C
ATOM 18 C6 A B 2 8.582 5.410 1.856 1.00 5.59 C
ATOM 19 N6 A B 2 7.979 6.520 2.287 1.00 6.71 N
ATOM 20 N1 A B 2 9.320 5.467 0.731 1.00 5.93 N
ATOM 21 C2 A B 2 9.915 4.353 0.284 1.00 6.30 C
ATOM 22 N3 A B 2 9.876 3.135 0.836 1.00 6.56 N
ATOM 23 C4 A B 2 9.131 3.112 1.949 1.00 5.75 C
ATOM 24 P A B 3 13.031 -0.012 5.458 1.00 9.75 P
ATOM 25 OP1 A B 3 13.907 -1.109 5.932 1.00 11.66 O
ATOM 26 OP2 A B 3 12.605 1.086 6.352 1.00 10.46 O
ATOM 27 O5' A B 3 13.702 0.723 4.230 1.00 8.83 O
TER
ATOM 2 P G A 5 9.306 8.844 -7.334 1.00 9.74 P
ATOM 3 OP1 G A 5 9.375 9.003 -8.807 1.00 10.88 O
ATOM 4 OP2 G A 5 8.132 9.354 -6.573 1.00 12.33 O
ATOM 5 O5' G A 5 9.380 7.288 -6.941 1.00 9.00 O
ATOM 6 C5' G A 5 10.319 6.406 -7.537 1.00 8.43 C
ATOM 7 C4' G A 5 10.202 5.027 -6.915 1.00 9.68 C
ATOM 8 O4' G A 5 10.580 5.067 -5.518 1.00 9.72 O
ATOM 9 C3' G A 5 8.818 4.387 -6.881 1.00 9.65 C
ATOM 10 O3' G A 5 8.489 3.874 -8.160 1.00 10.20 O
ATOM 11 C2' G A 5 9.038 3.260 -5.856 1.00 9.74 C
ATOM 12 O2' G A 5 9.838 2.214 -6.346 1.00 11.90 O
ATOM 13 C1' G A 5 9.829 4.079 -4.834 1.00 9.52 C
ATOM 14 N9 G A 5 8.939 4.807 -3.934 1.00 8.83 N
ATOM 15 C8 G A 5 8.581 6.131 -3.947 1.00 8.50 C
ATOM 16 N7 G A 5 7.771 6.506 -3.004 1.00 10.63 N
ATOM 17 C5 G A 5 7.541 5.339 -2.313 1.00 8.03 C
ATOM 18 C6 G A 5 6.734 5.092 -1.172 1.00 9.45 C
ATOM 19 O6 G A 5 6.036 5.886 -0.552 1.00 10.37 O
ATOM 20 N1 G A 5 6.762 3.759 -0.775 1.00 8.91 N
ATOM 21 C2 G A 5 7.505 2.778 -1.382 1.00 9.14 C
ATOM 22 N2 G A 5 7.410 1.565 -0.851 1.00 9.58 N
ATOM 23 N3 G A 5 8.272 2.994 -2.442 1.00 8.59 N
ATOM 24 C4 G A 5 8.252 4.289 -2.853 1.00 8.95 C
ATOM 25 P G A 6 6.968 3.855 -8.660 1.00 11.55 P
ATOM 26 OP1 G A 6 6.996 3.292 -10.029 1.00 13.54 O
ATOM 27 OP2 G A 6 6.340 5.178 -8.489 1.00 12.61 O
ATOM 28 O5' G A 6 6.248 2.833 -7.661 1.00 9.74 O
TER
ATOM 1 O3' C B 1 5.984 -0.622 6.568 1.00 12.02 O
ATOM 2 P A B 2 7.160 0.233 7.269 1.00 12.14 P
ATOM 3 OP1 A B 2 7.557 -0.571 8.439 1.00 13.02 O
ATOM 4 OP2 A B 2 6.844 1.652 7.472 1.00 13.86 O
ATOM 5 O5' A B 2 8.280 0.197 6.127 1.00 9.63 O
ATOM 6 C5' A B 2 8.742 -1.084 5.655 1.00 9.16 C
ATOM 7 C4' A B 2 9.411 -0.871 4.315 1.00 8.13 C
ATOM 8 O4' A B 2 8.519 -0.204 3.386 1.00 7.52 O
ATOM 9 C3' A B 2 10.653 0.008 4.354 1.00 7.46 C
ATOM 10 O3' A B 2 11.759 -0.754 4.841 1.00 8.20 O
ATOM 11 C2' A B 2 10.757 0.337 2.878 1.00 6.50 C
ATOM 12 O2' A B 2 11.204 -0.810 2.189 1.00 7.60 O
ATOM 13 C1' A B 2 9.310 0.634 2.568 1.00 6.47 C
ATOM 14 N9 A B 2 8.880 2.029 2.770 1.00 6.28 N
ATOM 15 C8 A B 2 8.097 2.510 3.782 1.00 6.87 C
ATOM 16 N7 A B 2 7.834 3.793 3.684 1.00 6.15 N
ATOM 17 C5 A B 2 8.485 4.180 2.524 1.00 5.72 C
ATOM 18 C6 A B 2 8.582 5.410 1.856 1.00 5.59 C
ATOM 19 N6 A B 2 7.979 6.520 2.287 1.00 6.71 N
ATOM 20 N1 A B 2 9.320 5.467 0.731 1.00 5.93 N
ATOM 21 C2 A B 2 9.915 4.353 0.284 1.00 6.30 C
ATOM 22 N3 A B 2 9.876 3.135 0.836 1.00 6.56 N
ATOM 23 C4 A B 2 9.131 3.112 1.949 1.00 5.75 C
ATOM 24 P A B 3 13.031 -0.012 5.458 1.00 9.75 P
ATOM 25 OP1 A B 3 13.907 -1.109 5.932 1.00 11.66 O
ATOM 26 OP2 A B 3 12.605 1.086 6.352 1.00 10.46 O
ATOM 27 O5' A B 3 13.702 0.723 4.230 1.00 8.83 O
TER
Atoms:
OP1: (9.375,9.003,-8.807)
OP2: (8.132,9.354,-6.573)
C3': (8.818,4.387,-6.881)
C1': (9.829,4.079,-4.834)
C5': (10.319,6.406,-7.537)
O6: (6.036,5.886,-0.552)
O4': (10.580,5.067,-5.518)
C8: (8.581,6.131,-3.947)
C2: (7.505,2.778,-1.382)
C6: (6.734,5.092,-1.172)
C5: (7.541,5.339,-2.313)
C4: (8.252,4.289,-2.853)
P: (9.306,8.844,-7.334)
C4': (10.202,5.027,-6.915)
C2': (9.038,3.260,-5.856)
O2': (9.838,2.214,-6.346)
N1: (6.762,3.759,-0.775)
N2: (7.410,1.565,-0.851)
N3: (8.272,2.994,-2.442)
N7: (7.771,6.506,-3.004)
N9: (8.939,4.807,-3.934)
O5': (9.380,7.288,-6.941)
O3': (8.489,3.874,-8.160)
OP2: (8.132,9.354,-6.573)
C3': (8.818,4.387,-6.881)
C1': (9.829,4.079,-4.834)
C5': (10.319,6.406,-7.537)
O6: (6.036,5.886,-0.552)
O4': (10.580,5.067,-5.518)
C8: (8.581,6.131,-3.947)
C2: (7.505,2.778,-1.382)
C6: (6.734,5.092,-1.172)
C5: (7.541,5.339,-2.313)
C4: (8.252,4.289,-2.853)
P: (9.306,8.844,-7.334)
C4': (10.202,5.027,-6.915)
C2': (9.038,3.260,-5.856)
O2': (9.838,2.214,-6.346)
N1: (6.762,3.759,-0.775)
N2: (7.410,1.565,-0.851)
N3: (8.272,2.994,-2.442)
N7: (7.771,6.506,-3.004)
N9: (8.939,4.807,-3.934)
O5': (9.380,7.288,-6.941)
O3': (8.489,3.874,-8.160)
OP1: (7.557,-0.571,8.439)
OP2: (6.844,1.652,7.472)
C3': (10.653,0.008,4.354)
C1': (9.310,0.634,2.568)
C5': (8.742,-1.084,5.655)
O4': (8.519,-0.204,3.386)
C8: (8.097,2.510,3.782)
O2': (11.204,-0.810,2.189)
C6: (8.582,5.410,1.856)
C5: (8.485,4.180,2.524)
C4: (9.131,3.112,1.949)
P: (7.160,0.233,7.269)
C4': (9.411,-0.871,4.315)
C2': (10.757,0.337,2.878)
C2: (9.915,4.353,0.284)
N1: (9.320,5.467,0.731)
N3: (9.876,3.135,0.836)
N6: (7.979,6.520,2.287)
N7: (7.834,3.793,3.684)
N9: (8.880,2.029,2.770)
O5': (8.280,0.197,6.127)
O3': (11.759,-0.754,4.841)
OP2: (6.844,1.652,7.472)
C3': (10.653,0.008,4.354)
C1': (9.310,0.634,2.568)
C5': (8.742,-1.084,5.655)
O4': (8.519,-0.204,3.386)
C8: (8.097,2.510,3.782)
O2': (11.204,-0.810,2.189)
C6: (8.582,5.410,1.856)
C5: (8.485,4.180,2.524)
C4: (9.131,3.112,1.949)
P: (7.160,0.233,7.269)
C4': (9.411,-0.871,4.315)
C2': (10.757,0.337,2.878)
C2: (9.915,4.353,0.284)
N1: (9.320,5.467,0.731)
N3: (9.876,3.135,0.836)
N6: (7.979,6.520,2.287)
N7: (7.834,3.793,3.684)
N9: (8.880,2.029,2.770)
O5': (8.280,0.197,6.127)
O3': (11.759,-0.754,4.841)
Image (generated by PyMOL):