Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:A41:A103
Extra
PDB:
ATOM 1 O3' U A 40 13.070 76.322 13.036 1.00 29.98 O
ATOM 2 P G A 41 12.076 75.060 12.933 1.00 32.33 P
ATOM 3 OP1 G A 41 10.808 75.667 12.464 1.00 30.87 O
ATOM 4 OP2 G A 41 12.144 74.306 14.209 1.00 25.47 O
ATOM 5 O5' G A 41 12.714 74.159 11.784 1.00 29.36 O
ATOM 6 C5' G A 41 12.711 74.612 10.440 1.00 30.58 C
ATOM 7 C4' G A 41 13.465 73.647 9.564 1.00 28.72 C
ATOM 8 O4' G A 41 14.856 73.624 9.974 1.00 30.66 O
ATOM 9 C3' G A 41 13.040 72.184 9.637 1.00 28.39 C
ATOM 10 O3' G A 41 11.888 71.892 8.872 1.00 28.72 O
ATOM 11 C2' G A 41 14.276 71.488 9.105 1.00 30.63 C
ATOM 12 O2' G A 41 14.339 71.662 7.698 1.00 34.36 O
ATOM 13 C1' G A 41 15.377 72.328 9.749 1.00 32.42 C
ATOM 14 N9 G A 41 15.811 71.745 11.031 1.00 31.60 N
ATOM 15 C8 G A 41 15.513 72.151 12.308 1.00 32.84 C
ATOM 16 N7 G A 41 16.070 71.401 13.224 1.00 28.91 N
ATOM 17 C5 G A 41 16.770 70.439 12.507 1.00 31.13 C
ATOM 18 C6 G A 41 17.566 69.350 12.954 1.00 29.17 C
ATOM 19 O6 G A 41 17.819 69.016 14.121 1.00 24.35 O
ATOM 20 N1 G A 41 18.099 68.639 11.882 1.00 29.22 N
ATOM 21 C2 G A 41 17.878 68.920 10.548 1.00 33.31 C
ATOM 22 N2 G A 41 18.466 68.116 9.647 1.00 29.14 N
ATOM 23 N3 G A 41 17.132 69.926 10.125 1.00 31.58 N
ATOM 24 C4 G A 41 16.619 70.639 11.152 1.00 31.56 C
ATOM 25 P C A 42 10.794 70.806 9.321 1.00 34.05 P
ATOM 26 OP1 C A 42 9.672 71.023 8.371 1.00 29.66 O
ATOM 27 OP2 C A 42 10.569 70.917 10.788 1.00 30.06 O
ATOM 28 O5' C A 42 11.526 69.416 9.036 1.00 34.12 O
TER
ATOM 1 O3' A B 102 19.011 65.308 7.636 1.00 30.38 O
ATOM 2 P A B 103 20.496 65.926 7.669 1.00 36.19 P
ATOM 3 OP1 A B 103 21.236 65.279 6.567 1.00 40.61 O
ATOM 4 OP2 A B 103 21.035 65.815 9.047 1.00 30.76 O
ATOM 5 O5' A B 103 20.194 67.466 7.342 1.00 40.24 O
ATOM 6 C5' A B 103 19.573 67.935 6.148 1.00 43.85 C
ATOM 7 C4' A B 103 19.978 69.364 5.861 1.00 44.44 C
ATOM 8 O4' A B 103 19.542 70.213 6.957 1.00 44.13 O
ATOM 9 C3' A B 103 21.483 69.575 5.807 1.00 45.59 C
ATOM 10 O3' A B 103 22.052 69.323 4.537 1.00 53.13 O
ATOM 11 C2' A B 103 21.667 71.004 6.296 1.00 51.63 C
ATOM 12 O2' A B 103 21.300 71.931 5.284 1.00 49.67 O
ATOM 13 C1' A B 103 20.605 71.039 7.387 1.00 43.64 C
ATOM 14 N9 A B 103 21.106 70.417 8.623 1.00 45.03 N
ATOM 15 C8 A B 103 21.983 69.366 8.819 1.00 42.94 C
ATOM 16 N7 A B 103 22.177 69.061 10.084 1.00 39.77 N
ATOM 17 C5 A B 103 21.361 69.970 10.754 1.00 40.21 C
ATOM 18 C6 A B 103 21.091 70.203 12.111 1.00 36.65 C
ATOM 19 N6 A B 103 21.612 69.531 13.137 1.00 35.79 N
ATOM 20 N1 A B 103 20.231 71.197 12.391 1.00 39.63 N
ATOM 21 C2 A B 103 19.681 71.901 11.396 1.00 38.34 C
ATOM 22 N3 A B 103 19.843 71.791 10.091 1.00 37.91 N
ATOM 23 C4 A B 103 20.705 70.798 9.857 1.00 40.50 C
ATOM 24 P U B 104 23.422 68.489 4.510 1.00 59.96 P
ATOM 25 OP1 U B 104 24.262 69.057 3.419 1.00 64.20 O
ATOM 26 OP2 U B 104 22.981 67.079 4.447 1.00 56.21 O
ATOM 27 O5' U B 104 24.067 68.792 5.940 1.00 56.30 O
TER
ATOM 2 P G A 41 12.076 75.060 12.933 1.00 32.33 P
ATOM 3 OP1 G A 41 10.808 75.667 12.464 1.00 30.87 O
ATOM 4 OP2 G A 41 12.144 74.306 14.209 1.00 25.47 O
ATOM 5 O5' G A 41 12.714 74.159 11.784 1.00 29.36 O
ATOM 6 C5' G A 41 12.711 74.612 10.440 1.00 30.58 C
ATOM 7 C4' G A 41 13.465 73.647 9.564 1.00 28.72 C
ATOM 8 O4' G A 41 14.856 73.624 9.974 1.00 30.66 O
ATOM 9 C3' G A 41 13.040 72.184 9.637 1.00 28.39 C
ATOM 10 O3' G A 41 11.888 71.892 8.872 1.00 28.72 O
ATOM 11 C2' G A 41 14.276 71.488 9.105 1.00 30.63 C
ATOM 12 O2' G A 41 14.339 71.662 7.698 1.00 34.36 O
ATOM 13 C1' G A 41 15.377 72.328 9.749 1.00 32.42 C
ATOM 14 N9 G A 41 15.811 71.745 11.031 1.00 31.60 N
ATOM 15 C8 G A 41 15.513 72.151 12.308 1.00 32.84 C
ATOM 16 N7 G A 41 16.070 71.401 13.224 1.00 28.91 N
ATOM 17 C5 G A 41 16.770 70.439 12.507 1.00 31.13 C
ATOM 18 C6 G A 41 17.566 69.350 12.954 1.00 29.17 C
ATOM 19 O6 G A 41 17.819 69.016 14.121 1.00 24.35 O
ATOM 20 N1 G A 41 18.099 68.639 11.882 1.00 29.22 N
ATOM 21 C2 G A 41 17.878 68.920 10.548 1.00 33.31 C
ATOM 22 N2 G A 41 18.466 68.116 9.647 1.00 29.14 N
ATOM 23 N3 G A 41 17.132 69.926 10.125 1.00 31.58 N
ATOM 24 C4 G A 41 16.619 70.639 11.152 1.00 31.56 C
ATOM 25 P C A 42 10.794 70.806 9.321 1.00 34.05 P
ATOM 26 OP1 C A 42 9.672 71.023 8.371 1.00 29.66 O
ATOM 27 OP2 C A 42 10.569 70.917 10.788 1.00 30.06 O
ATOM 28 O5' C A 42 11.526 69.416 9.036 1.00 34.12 O
TER
ATOM 1 O3' A B 102 19.011 65.308 7.636 1.00 30.38 O
ATOM 2 P A B 103 20.496 65.926 7.669 1.00 36.19 P
ATOM 3 OP1 A B 103 21.236 65.279 6.567 1.00 40.61 O
ATOM 4 OP2 A B 103 21.035 65.815 9.047 1.00 30.76 O
ATOM 5 O5' A B 103 20.194 67.466 7.342 1.00 40.24 O
ATOM 6 C5' A B 103 19.573 67.935 6.148 1.00 43.85 C
ATOM 7 C4' A B 103 19.978 69.364 5.861 1.00 44.44 C
ATOM 8 O4' A B 103 19.542 70.213 6.957 1.00 44.13 O
ATOM 9 C3' A B 103 21.483 69.575 5.807 1.00 45.59 C
ATOM 10 O3' A B 103 22.052 69.323 4.537 1.00 53.13 O
ATOM 11 C2' A B 103 21.667 71.004 6.296 1.00 51.63 C
ATOM 12 O2' A B 103 21.300 71.931 5.284 1.00 49.67 O
ATOM 13 C1' A B 103 20.605 71.039 7.387 1.00 43.64 C
ATOM 14 N9 A B 103 21.106 70.417 8.623 1.00 45.03 N
ATOM 15 C8 A B 103 21.983 69.366 8.819 1.00 42.94 C
ATOM 16 N7 A B 103 22.177 69.061 10.084 1.00 39.77 N
ATOM 17 C5 A B 103 21.361 69.970 10.754 1.00 40.21 C
ATOM 18 C6 A B 103 21.091 70.203 12.111 1.00 36.65 C
ATOM 19 N6 A B 103 21.612 69.531 13.137 1.00 35.79 N
ATOM 20 N1 A B 103 20.231 71.197 12.391 1.00 39.63 N
ATOM 21 C2 A B 103 19.681 71.901 11.396 1.00 38.34 C
ATOM 22 N3 A B 103 19.843 71.791 10.091 1.00 37.91 N
ATOM 23 C4 A B 103 20.705 70.798 9.857 1.00 40.50 C
ATOM 24 P U B 104 23.422 68.489 4.510 1.00 59.96 P
ATOM 25 OP1 U B 104 24.262 69.057 3.419 1.00 64.20 O
ATOM 26 OP2 U B 104 22.981 67.079 4.447 1.00 56.21 O
ATOM 27 O5' U B 104 24.067 68.792 5.940 1.00 56.30 O
TER
Atoms:
OP1: (10.808,75.667,12.464)
OP2: (12.144,74.306,14.209)
C3': (13.040,72.184,9.637)
C1': (15.377,72.328,9.749)
C5': (12.711,74.612,10.440)
O6: (17.819,69.016,14.121)
O4': (14.856,73.624,9.974)
C8: (15.513,72.151,12.308)
C2: (17.878,68.920,10.548)
C6: (17.566,69.350,12.954)
C5: (16.770,70.439,12.507)
C4: (16.619,70.639,11.152)
P: (12.076,75.060,12.933)
C4': (13.465,73.647,9.564)
C2': (14.276,71.488,9.105)
O2': (14.339,71.662,7.698)
N1: (18.099,68.639,11.882)
N2: (18.466,68.116,9.647)
N3: (17.132,69.926,10.125)
N7: (16.070,71.401,13.224)
N9: (15.811,71.745,11.031)
O5': (12.714,74.159,11.784)
O3': (11.888,71.892,8.872)
OP2: (12.144,74.306,14.209)
C3': (13.040,72.184,9.637)
C1': (15.377,72.328,9.749)
C5': (12.711,74.612,10.440)
O6: (17.819,69.016,14.121)
O4': (14.856,73.624,9.974)
C8: (15.513,72.151,12.308)
C2: (17.878,68.920,10.548)
C6: (17.566,69.350,12.954)
C5: (16.770,70.439,12.507)
C4: (16.619,70.639,11.152)
P: (12.076,75.060,12.933)
C4': (13.465,73.647,9.564)
C2': (14.276,71.488,9.105)
O2': (14.339,71.662,7.698)
N1: (18.099,68.639,11.882)
N2: (18.466,68.116,9.647)
N3: (17.132,69.926,10.125)
N7: (16.070,71.401,13.224)
N9: (15.811,71.745,11.031)
O5': (12.714,74.159,11.784)
O3': (11.888,71.892,8.872)
OP1: (21.236,65.279,6.567)
OP2: (21.035,65.815,9.047)
C3': (21.483,69.575,5.807)
C1': (20.605,71.039,7.387)
C5': (19.573,67.935,6.148)
O4': (19.542,70.213,6.957)
C8: (21.983,69.366,8.819)
O2': (21.300,71.931,5.284)
C6: (21.091,70.203,12.111)
C5: (21.361,69.970,10.754)
C4: (20.705,70.798,9.857)
P: (20.496,65.926,7.669)
C4': (19.978,69.364,5.861)
C2': (21.667,71.004,6.296)
C2: (19.681,71.901,11.396)
N1: (20.231,71.197,12.391)
N3: (19.843,71.791,10.091)
N6: (21.612,69.531,13.137)
N7: (22.177,69.061,10.084)
N9: (21.106,70.417,8.623)
O5': (20.194,67.466,7.342)
O3': (22.052,69.323,4.537)
OP2: (21.035,65.815,9.047)
C3': (21.483,69.575,5.807)
C1': (20.605,71.039,7.387)
C5': (19.573,67.935,6.148)
O4': (19.542,70.213,6.957)
C8: (21.983,69.366,8.819)
O2': (21.300,71.931,5.284)
C6: (21.091,70.203,12.111)
C5: (21.361,69.970,10.754)
C4: (20.705,70.798,9.857)
P: (20.496,65.926,7.669)
C4': (19.978,69.364,5.861)
C2': (21.667,71.004,6.296)
C2: (19.681,71.901,11.396)
N1: (20.231,71.197,12.391)
N3: (19.843,71.791,10.091)
N6: (21.612,69.531,13.137)
N7: (22.177,69.061,10.084)
N9: (21.106,70.417,8.623)
O5': (20.194,67.466,7.342)
O3': (22.052,69.323,4.537)
Image (generated by PyMOL):