Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:046:060
Extra
PDB:
ATOM 1 O3' U A 45 55.508 165.455 36.040 1.00 48.91 O
ATOM 2 P G A 46 54.516 166.392 36.884 1.00 50.06 P
ATOM 3 OP1 G A 46 54.184 167.570 36.045 1.00 50.06 O
ATOM 4 OP2 G A 46 55.089 166.597 38.233 1.00 50.20 O
ATOM 5 O5' G A 46 53.192 165.522 37.006 1.00 50.55 O
ATOM 6 C5' G A 46 52.491 165.118 35.829 1.00 49.74 C
ATOM 7 C4' G A 46 51.008 165.211 36.049 1.00 50.26 C
ATOM 8 O4' G A 46 50.584 164.113 36.896 1.00 52.20 O
ATOM 9 C3' G A 46 50.492 166.484 36.708 1.00 50.28 C
ATOM 10 O3' G A 46 49.227 166.793 36.137 1.00 52.60 O
ATOM 11 C2' G A 46 50.307 166.050 38.160 1.00 49.11 C
ATOM 12 O2' G A 46 49.318 166.791 38.836 1.00 47.14 O
ATOM 13 C1' G A 46 49.826 164.615 37.973 1.00 51.43 C
ATOM 14 N9 G A 46 49.975 163.702 39.105 1.00 54.04 N
ATOM 15 C8 G A 46 50.684 163.901 40.270 1.00 54.42 C
ATOM 16 N7 G A 46 50.614 162.889 41.092 1.00 53.77 N
ATOM 17 C5 G A 46 49.815 161.963 40.432 1.00 54.26 C
ATOM 18 C6 G A 46 49.387 160.673 40.827 1.00 53.59 C
ATOM 19 O6 G A 46 49.638 160.066 41.871 1.00 54.02 O
ATOM 20 N1 G A 46 48.586 160.080 39.856 1.00 54.66 N
ATOM 21 C2 G A 46 48.245 160.649 38.656 1.00 54.30 C
ATOM 22 N2 G A 46 47.472 159.911 37.851 1.00 53.24 N
ATOM 23 N3 G A 46 48.636 161.850 38.274 1.00 54.41 N
ATOM 24 C4 G A 46 49.413 162.448 39.205 1.00 54.31 C
ATOM 25 P C A 47 48.998 168.215 35.426 1.00 52.45 P
ATOM 26 OP1 C A 47 47.709 168.165 34.687 1.00 52.89 O
ATOM 27 OP2 C A 47 50.247 168.551 34.703 1.00 51.89 O
ATOM 28 O5' C A 47 48.822 169.229 36.638 1.00 51.76 O
TER
ATOM 1 O3' A B 59 53.610 161.128 31.264 1.00 43.65 O
ATOM 2 P A B 60 52.613 161.370 32.520 1.00 42.88 P
ATOM 3 OP1 A B 60 51.896 162.654 32.347 1.00 44.37 O
ATOM 4 OP2 A B 60 53.357 161.128 33.768 1.00 44.97 O
ATOM 5 O5' A B 60 51.548 160.193 32.387 1.00 44.18 O
ATOM 6 C5' A B 60 50.147 160.428 32.606 1.00 46.51 C
ATOM 7 C4' A B 60 49.377 159.125 32.539 1.00 49.47 C
ATOM 8 O4' A B 60 49.863 158.220 33.564 1.00 49.58 O
ATOM 9 C3' A B 60 47.880 159.261 32.787 1.00 51.69 C
ATOM 10 O3' A B 60 47.185 158.229 32.108 1.00 54.83 O
ATOM 11 C2' A B 60 47.770 159.027 34.286 1.00 51.89 C
ATOM 12 O2' A B 60 46.487 158.561 34.648 1.00 53.56 O
ATOM 13 C1' A B 60 48.833 157.950 34.496 1.00 51.68 C
ATOM 14 N9 A B 60 49.436 157.952 35.828 1.00 52.71 N
ATOM 15 C8 A B 60 49.456 156.925 36.733 1.00 53.99 C
ATOM 16 N7 A B 60 50.143 157.189 37.816 1.00 55.21 N
ATOM 17 C5 A B 60 50.595 158.486 37.618 1.00 54.67 C
ATOM 18 C6 A B 60 51.398 159.338 38.393 1.00 54.31 C
ATOM 19 N6 A B 60 51.933 158.990 39.566 1.00 53.53 N
ATOM 20 N1 A B 60 51.645 160.574 37.913 1.00 53.93 N
ATOM 21 C2 A B 60 51.128 160.914 36.730 1.00 53.38 C
ATOM 22 N3 A B 60 50.374 160.200 35.904 1.00 53.24 N
ATOM 23 C4 A B 60 50.143 158.979 36.410 1.00 53.46 C
ATOM 24 P G B 61 46.713 158.450 30.591 1.00 57.62 P
ATOM 25 OP1 G B 61 46.127 159.817 30.464 1.00 56.01 O
ATOM 26 OP2 G B 61 45.907 157.258 30.195 1.00 57.38 O
ATOM 27 O5' G B 61 48.083 158.420 29.788 1.00 54.97 O
TER
ATOM 2 P G A 46 54.516 166.392 36.884 1.00 50.06 P
ATOM 3 OP1 G A 46 54.184 167.570 36.045 1.00 50.06 O
ATOM 4 OP2 G A 46 55.089 166.597 38.233 1.00 50.20 O
ATOM 5 O5' G A 46 53.192 165.522 37.006 1.00 50.55 O
ATOM 6 C5' G A 46 52.491 165.118 35.829 1.00 49.74 C
ATOM 7 C4' G A 46 51.008 165.211 36.049 1.00 50.26 C
ATOM 8 O4' G A 46 50.584 164.113 36.896 1.00 52.20 O
ATOM 9 C3' G A 46 50.492 166.484 36.708 1.00 50.28 C
ATOM 10 O3' G A 46 49.227 166.793 36.137 1.00 52.60 O
ATOM 11 C2' G A 46 50.307 166.050 38.160 1.00 49.11 C
ATOM 12 O2' G A 46 49.318 166.791 38.836 1.00 47.14 O
ATOM 13 C1' G A 46 49.826 164.615 37.973 1.00 51.43 C
ATOM 14 N9 G A 46 49.975 163.702 39.105 1.00 54.04 N
ATOM 15 C8 G A 46 50.684 163.901 40.270 1.00 54.42 C
ATOM 16 N7 G A 46 50.614 162.889 41.092 1.00 53.77 N
ATOM 17 C5 G A 46 49.815 161.963 40.432 1.00 54.26 C
ATOM 18 C6 G A 46 49.387 160.673 40.827 1.00 53.59 C
ATOM 19 O6 G A 46 49.638 160.066 41.871 1.00 54.02 O
ATOM 20 N1 G A 46 48.586 160.080 39.856 1.00 54.66 N
ATOM 21 C2 G A 46 48.245 160.649 38.656 1.00 54.30 C
ATOM 22 N2 G A 46 47.472 159.911 37.851 1.00 53.24 N
ATOM 23 N3 G A 46 48.636 161.850 38.274 1.00 54.41 N
ATOM 24 C4 G A 46 49.413 162.448 39.205 1.00 54.31 C
ATOM 25 P C A 47 48.998 168.215 35.426 1.00 52.45 P
ATOM 26 OP1 C A 47 47.709 168.165 34.687 1.00 52.89 O
ATOM 27 OP2 C A 47 50.247 168.551 34.703 1.00 51.89 O
ATOM 28 O5' C A 47 48.822 169.229 36.638 1.00 51.76 O
TER
ATOM 1 O3' A B 59 53.610 161.128 31.264 1.00 43.65 O
ATOM 2 P A B 60 52.613 161.370 32.520 1.00 42.88 P
ATOM 3 OP1 A B 60 51.896 162.654 32.347 1.00 44.37 O
ATOM 4 OP2 A B 60 53.357 161.128 33.768 1.00 44.97 O
ATOM 5 O5' A B 60 51.548 160.193 32.387 1.00 44.18 O
ATOM 6 C5' A B 60 50.147 160.428 32.606 1.00 46.51 C
ATOM 7 C4' A B 60 49.377 159.125 32.539 1.00 49.47 C
ATOM 8 O4' A B 60 49.863 158.220 33.564 1.00 49.58 O
ATOM 9 C3' A B 60 47.880 159.261 32.787 1.00 51.69 C
ATOM 10 O3' A B 60 47.185 158.229 32.108 1.00 54.83 O
ATOM 11 C2' A B 60 47.770 159.027 34.286 1.00 51.89 C
ATOM 12 O2' A B 60 46.487 158.561 34.648 1.00 53.56 O
ATOM 13 C1' A B 60 48.833 157.950 34.496 1.00 51.68 C
ATOM 14 N9 A B 60 49.436 157.952 35.828 1.00 52.71 N
ATOM 15 C8 A B 60 49.456 156.925 36.733 1.00 53.99 C
ATOM 16 N7 A B 60 50.143 157.189 37.816 1.00 55.21 N
ATOM 17 C5 A B 60 50.595 158.486 37.618 1.00 54.67 C
ATOM 18 C6 A B 60 51.398 159.338 38.393 1.00 54.31 C
ATOM 19 N6 A B 60 51.933 158.990 39.566 1.00 53.53 N
ATOM 20 N1 A B 60 51.645 160.574 37.913 1.00 53.93 N
ATOM 21 C2 A B 60 51.128 160.914 36.730 1.00 53.38 C
ATOM 22 N3 A B 60 50.374 160.200 35.904 1.00 53.24 N
ATOM 23 C4 A B 60 50.143 158.979 36.410 1.00 53.46 C
ATOM 24 P G B 61 46.713 158.450 30.591 1.00 57.62 P
ATOM 25 OP1 G B 61 46.127 159.817 30.464 1.00 56.01 O
ATOM 26 OP2 G B 61 45.907 157.258 30.195 1.00 57.38 O
ATOM 27 O5' G B 61 48.083 158.420 29.788 1.00 54.97 O
TER
Atoms:
OP1: (54.184,167.570,36.045)
OP2: (55.089,166.597,38.233)
C3': (50.492,166.484,36.708)
C1': (49.826,164.615,37.973)
C5': (52.491,165.118,35.829)
O6: (49.638,160.066,41.871)
O4': (50.584,164.113,36.896)
C8: (50.684,163.901,40.270)
C2: (48.245,160.649,38.656)
C6: (49.387,160.673,40.827)
C5: (49.815,161.963,40.432)
C4: (49.413,162.448,39.205)
P: (54.516,166.392,36.884)
C4': (51.008,165.211,36.049)
C2': (50.307,166.050,38.160)
O2': (49.318,166.791,38.836)
N1: (48.586,160.080,39.856)
N2: (47.472,159.911,37.851)
N3: (48.636,161.850,38.274)
N7: (50.614,162.889,41.092)
N9: (49.975,163.702,39.105)
O5': (53.192,165.522,37.006)
O3': (49.227,166.793,36.137)
OP2: (55.089,166.597,38.233)
C3': (50.492,166.484,36.708)
C1': (49.826,164.615,37.973)
C5': (52.491,165.118,35.829)
O6: (49.638,160.066,41.871)
O4': (50.584,164.113,36.896)
C8: (50.684,163.901,40.270)
C2: (48.245,160.649,38.656)
C6: (49.387,160.673,40.827)
C5: (49.815,161.963,40.432)
C4: (49.413,162.448,39.205)
P: (54.516,166.392,36.884)
C4': (51.008,165.211,36.049)
C2': (50.307,166.050,38.160)
O2': (49.318,166.791,38.836)
N1: (48.586,160.080,39.856)
N2: (47.472,159.911,37.851)
N3: (48.636,161.850,38.274)
N7: (50.614,162.889,41.092)
N9: (49.975,163.702,39.105)
O5': (53.192,165.522,37.006)
O3': (49.227,166.793,36.137)
OP1: (51.896,162.654,32.347)
OP2: (53.357,161.128,33.768)
C3': (47.880,159.261,32.787)
C1': (48.833,157.950,34.496)
C5': (50.147,160.428,32.606)
O4': (49.863,158.220,33.564)
C8: (49.456,156.925,36.733)
O2': (46.487,158.561,34.648)
C6: (51.398,159.338,38.393)
C5: (50.595,158.486,37.618)
C4: (50.143,158.979,36.410)
P: (52.613,161.370,32.520)
C4': (49.377,159.125,32.539)
C2': (47.770,159.027,34.286)
C2: (51.128,160.914,36.730)
N1: (51.645,160.574,37.913)
N3: (50.374,160.200,35.904)
N6: (51.933,158.990,39.566)
N7: (50.143,157.189,37.816)
N9: (49.436,157.952,35.828)
O5': (51.548,160.193,32.387)
O3': (47.185,158.229,32.108)
OP2: (53.357,161.128,33.768)
C3': (47.880,159.261,32.787)
C1': (48.833,157.950,34.496)
C5': (50.147,160.428,32.606)
O4': (49.863,158.220,33.564)
C8: (49.456,156.925,36.733)
O2': (46.487,158.561,34.648)
C6: (51.398,159.338,38.393)
C5: (50.595,158.486,37.618)
C4: (50.143,158.979,36.410)
P: (52.613,161.370,32.520)
C4': (49.377,159.125,32.539)
C2': (47.770,159.027,34.286)
C2: (51.128,160.914,36.730)
N1: (51.645,160.574,37.913)
N3: (50.374,160.200,35.904)
N6: (51.933,158.990,39.566)
N7: (50.143,157.189,37.816)
N9: (49.436,157.952,35.828)
O5': (51.548,160.193,32.387)
O3': (47.185,158.229,32.108)
Image (generated by PyMOL):