Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A488:A1277
Extra
PDB:
ATOM 1 O3' G A 487 -19.254 -93.948 6.442 1.00 0.01 O
ATOM 2 P G A 488 -17.823 -93.465 5.897 1.00 0.01 P
ATOM 3 OP1 G A 488 -18.061 -92.557 4.761 1.00 0.01 O
ATOM 4 OP2 G A 488 -16.996 -94.671 5.674 1.00 0.01 O
ATOM 5 O5' G A 488 -17.267 -92.642 7.106 1.00 0.01 O
ATOM 6 C5' G A 488 -16.061 -91.941 6.961 1.00 0.01 C
ATOM 7 C4' G A 488 -15.989 -90.785 7.888 1.00 0.01 C
ATOM 8 O4' G A 488 -17.077 -89.901 7.588 1.00 0.01 O
ATOM 9 C3' G A 488 -16.116 -91.146 9.353 1.00 0.01 C
ATOM 10 O3' G A 488 -15.285 -90.293 10.122 1.00 0.01 O
ATOM 11 C2' G A 488 -17.562 -90.841 9.655 1.00 0.01 C
ATOM 12 O2' G A 488 -17.789 -90.511 10.990 1.00 0.01 O
ATOM 13 C1' G A 488 -17.815 -89.655 8.748 1.00 0.01 C
ATOM 14 N9 G A 488 -19.219 -89.456 8.371 1.00 0.01 N
ATOM 15 C8 G A 488 -19.966 -90.025 7.371 1.00 0.01 C
ATOM 16 N7 G A 488 -21.196 -89.578 7.323 1.00 0.01 N
ATOM 17 C5 G A 488 -21.267 -88.656 8.349 1.00 0.01 C
ATOM 18 C6 G A 488 -22.337 -87.845 8.816 1.00 0.01 C
ATOM 19 O6 G A 488 -23.514 -87.777 8.382 1.00 0.01 O
ATOM 20 N1 G A 488 -21.916 -87.060 9.905 1.00 0.01 N
ATOM 21 C2 G A 488 -20.639 -87.065 10.443 1.00 0.01 C
ATOM 22 N2 G A 488 -20.321 -86.278 11.493 1.00 0.01 N
ATOM 23 N3 G A 488 -19.679 -87.822 9.998 1.00 0.01 N
ATOM 24 C4 G A 488 -20.056 -88.573 8.974 1.00 0.01 C
ATOM 25 P C A 489 -13.760 -90.693 10.440 1.00 4.76 P
ATOM 26 OP1 C A 489 -12.949 -89.453 10.350 1.00 4.76 O
ATOM 27 OP2 C A 489 -13.414 -91.839 9.566 1.00 4.76 O
ATOM 28 O5' C A 489 -13.840 -91.174 11.938 1.00 4.76 O
TER
ATOM 1 O3' G B1276 -12.463 -85.782 5.830 1.00 0.01 O
ATOM 2 P A B1277 -12.089 -87.280 5.469 1.00 0.01 P
ATOM 3 OP1 A B1277 -12.007 -88.011 6.751 1.00 0.01 O
ATOM 4 OP2 A B1277 -10.907 -87.221 4.585 1.00 0.01 O
ATOM 5 O5' A B1277 -13.349 -87.777 4.653 1.00 0.01 O
ATOM 6 C5' A B1277 -13.256 -88.870 3.755 1.00 0.01 C
ATOM 7 C4' A B1277 -14.621 -89.280 3.282 1.00 0.01 C
ATOM 8 O4' A B1277 -15.461 -89.480 4.432 1.00 0.01 O
ATOM 9 C3' A B1277 -15.367 -88.252 2.443 1.00 0.01 C
ATOM 10 O3' A B1277 -15.042 -88.326 1.067 1.00 0.01 O
ATOM 11 C2' A B1277 -16.831 -88.544 2.743 1.00 0.01 C
ATOM 12 O2' A B1277 -17.325 -89.572 1.906 1.00 0.01 O
ATOM 13 C1' A B1277 -16.768 -89.068 4.166 1.00 0.01 C
ATOM 14 N9 A B1277 -17.123 -88.068 5.160 1.00 0.01 N
ATOM 15 C8 A B1277 -16.335 -87.602 6.171 1.00 0.01 C
ATOM 16 N7 A B1277 -16.956 -86.752 6.954 1.00 0.01 N
ATOM 17 C5 A B1277 -18.239 -86.698 6.421 1.00 0.01 C
ATOM 18 C6 A B1277 -19.396 -85.994 6.772 1.00 0.01 C
ATOM 19 N6 A B1277 -19.503 -85.127 7.777 1.00 0.01 N
ATOM 20 N1 A B1277 -20.482 -86.202 6.033 1.00 0.01 N
ATOM 21 C2 A B1277 -20.401 -87.046 5.011 1.00 0.01 C
ATOM 22 N3 A B1277 -19.382 -87.752 4.559 1.00 0.01 N
ATOM 23 C4 A B1277 -18.337 -87.523 5.327 1.00 0.01 C
ATOM 24 P A B1278 -14.379 -87.067 0.344 1.00 0.01 P
ATOM 25 OP1 A B1278 -13.647 -87.554 -0.821 1.00 0.01 O
ATOM 26 OP2 A B1278 -13.646 -86.330 1.370 1.00 0.01 O
ATOM 27 O5' A B1278 -15.652 -86.257 -0.140 1.00 0.01 O
TER
ATOM 2 P G A 488 -17.823 -93.465 5.897 1.00 0.01 P
ATOM 3 OP1 G A 488 -18.061 -92.557 4.761 1.00 0.01 O
ATOM 4 OP2 G A 488 -16.996 -94.671 5.674 1.00 0.01 O
ATOM 5 O5' G A 488 -17.267 -92.642 7.106 1.00 0.01 O
ATOM 6 C5' G A 488 -16.061 -91.941 6.961 1.00 0.01 C
ATOM 7 C4' G A 488 -15.989 -90.785 7.888 1.00 0.01 C
ATOM 8 O4' G A 488 -17.077 -89.901 7.588 1.00 0.01 O
ATOM 9 C3' G A 488 -16.116 -91.146 9.353 1.00 0.01 C
ATOM 10 O3' G A 488 -15.285 -90.293 10.122 1.00 0.01 O
ATOM 11 C2' G A 488 -17.562 -90.841 9.655 1.00 0.01 C
ATOM 12 O2' G A 488 -17.789 -90.511 10.990 1.00 0.01 O
ATOM 13 C1' G A 488 -17.815 -89.655 8.748 1.00 0.01 C
ATOM 14 N9 G A 488 -19.219 -89.456 8.371 1.00 0.01 N
ATOM 15 C8 G A 488 -19.966 -90.025 7.371 1.00 0.01 C
ATOM 16 N7 G A 488 -21.196 -89.578 7.323 1.00 0.01 N
ATOM 17 C5 G A 488 -21.267 -88.656 8.349 1.00 0.01 C
ATOM 18 C6 G A 488 -22.337 -87.845 8.816 1.00 0.01 C
ATOM 19 O6 G A 488 -23.514 -87.777 8.382 1.00 0.01 O
ATOM 20 N1 G A 488 -21.916 -87.060 9.905 1.00 0.01 N
ATOM 21 C2 G A 488 -20.639 -87.065 10.443 1.00 0.01 C
ATOM 22 N2 G A 488 -20.321 -86.278 11.493 1.00 0.01 N
ATOM 23 N3 G A 488 -19.679 -87.822 9.998 1.00 0.01 N
ATOM 24 C4 G A 488 -20.056 -88.573 8.974 1.00 0.01 C
ATOM 25 P C A 489 -13.760 -90.693 10.440 1.00 4.76 P
ATOM 26 OP1 C A 489 -12.949 -89.453 10.350 1.00 4.76 O
ATOM 27 OP2 C A 489 -13.414 -91.839 9.566 1.00 4.76 O
ATOM 28 O5' C A 489 -13.840 -91.174 11.938 1.00 4.76 O
TER
ATOM 1 O3' G B1276 -12.463 -85.782 5.830 1.00 0.01 O
ATOM 2 P A B1277 -12.089 -87.280 5.469 1.00 0.01 P
ATOM 3 OP1 A B1277 -12.007 -88.011 6.751 1.00 0.01 O
ATOM 4 OP2 A B1277 -10.907 -87.221 4.585 1.00 0.01 O
ATOM 5 O5' A B1277 -13.349 -87.777 4.653 1.00 0.01 O
ATOM 6 C5' A B1277 -13.256 -88.870 3.755 1.00 0.01 C
ATOM 7 C4' A B1277 -14.621 -89.280 3.282 1.00 0.01 C
ATOM 8 O4' A B1277 -15.461 -89.480 4.432 1.00 0.01 O
ATOM 9 C3' A B1277 -15.367 -88.252 2.443 1.00 0.01 C
ATOM 10 O3' A B1277 -15.042 -88.326 1.067 1.00 0.01 O
ATOM 11 C2' A B1277 -16.831 -88.544 2.743 1.00 0.01 C
ATOM 12 O2' A B1277 -17.325 -89.572 1.906 1.00 0.01 O
ATOM 13 C1' A B1277 -16.768 -89.068 4.166 1.00 0.01 C
ATOM 14 N9 A B1277 -17.123 -88.068 5.160 1.00 0.01 N
ATOM 15 C8 A B1277 -16.335 -87.602 6.171 1.00 0.01 C
ATOM 16 N7 A B1277 -16.956 -86.752 6.954 1.00 0.01 N
ATOM 17 C5 A B1277 -18.239 -86.698 6.421 1.00 0.01 C
ATOM 18 C6 A B1277 -19.396 -85.994 6.772 1.00 0.01 C
ATOM 19 N6 A B1277 -19.503 -85.127 7.777 1.00 0.01 N
ATOM 20 N1 A B1277 -20.482 -86.202 6.033 1.00 0.01 N
ATOM 21 C2 A B1277 -20.401 -87.046 5.011 1.00 0.01 C
ATOM 22 N3 A B1277 -19.382 -87.752 4.559 1.00 0.01 N
ATOM 23 C4 A B1277 -18.337 -87.523 5.327 1.00 0.01 C
ATOM 24 P A B1278 -14.379 -87.067 0.344 1.00 0.01 P
ATOM 25 OP1 A B1278 -13.647 -87.554 -0.821 1.00 0.01 O
ATOM 26 OP2 A B1278 -13.646 -86.330 1.370 1.00 0.01 O
ATOM 27 O5' A B1278 -15.652 -86.257 -0.140 1.00 0.01 O
TER
Atoms:
OP1: (-18.061,-92.557,4.761)
OP2: (-16.996,-94.671,5.674)
C3': (-16.116,-91.146,9.353)
C1': (-17.815,-89.655,8.748)
C5': (-16.061,-91.941,6.961)
O6: (-23.514,-87.777,8.382)
O4': (-17.077,-89.901,7.588)
C8: (-19.966,-90.025,7.371)
C2: (-20.639,-87.065,10.443)
C6: (-22.337,-87.845,8.816)
C5: (-21.267,-88.656,8.349)
C4: (-20.056,-88.573,8.974)
P: (-17.823,-93.465,5.897)
C4': (-15.989,-90.785,7.888)
C2': (-17.562,-90.841,9.655)
O2': (-17.789,-90.511,10.990)
N1: (-21.916,-87.060,9.905)
N2: (-20.321,-86.278,11.493)
N3: (-19.679,-87.822,9.998)
N7: (-21.196,-89.578,7.323)
N9: (-19.219,-89.456,8.371)
O5': (-17.267,-92.642,7.106)
O3': (-15.285,-90.293,10.122)
OP2: (-16.996,-94.671,5.674)
C3': (-16.116,-91.146,9.353)
C1': (-17.815,-89.655,8.748)
C5': (-16.061,-91.941,6.961)
O6: (-23.514,-87.777,8.382)
O4': (-17.077,-89.901,7.588)
C8: (-19.966,-90.025,7.371)
C2: (-20.639,-87.065,10.443)
C6: (-22.337,-87.845,8.816)
C5: (-21.267,-88.656,8.349)
C4: (-20.056,-88.573,8.974)
P: (-17.823,-93.465,5.897)
C4': (-15.989,-90.785,7.888)
C2': (-17.562,-90.841,9.655)
O2': (-17.789,-90.511,10.990)
N1: (-21.916,-87.060,9.905)
N2: (-20.321,-86.278,11.493)
N3: (-19.679,-87.822,9.998)
N7: (-21.196,-89.578,7.323)
N9: (-19.219,-89.456,8.371)
O5': (-17.267,-92.642,7.106)
O3': (-15.285,-90.293,10.122)
OP1: (-12.007,-88.011,6.751)
OP2: (-10.907,-87.221,4.585)
C3': (-15.367,-88.252,2.443)
C1': (-16.768,-89.068,4.166)
C5': (-13.256,-88.870,3.755)
O4': (-15.461,-89.480,4.432)
C8: (-16.335,-87.602,6.171)
O2': (-17.325,-89.572,1.906)
C6: (-19.396,-85.994,6.772)
C5: (-18.239,-86.698,6.421)
C4: (-18.337,-87.523,5.327)
P: (-12.089,-87.280,5.469)
C4': (-14.621,-89.280,3.282)
C2': (-16.831,-88.544,2.743)
C2: (-20.401,-87.046,5.011)
N1: (-20.482,-86.202,6.033)
N3: (-19.382,-87.752,4.559)
N6: (-19.503,-85.127,7.777)
N7: (-16.956,-86.752,6.954)
N9: (-17.123,-88.068,5.160)
O5': (-13.349,-87.777,4.653)
O3': (-15.042,-88.326,1.067)
OP2: (-10.907,-87.221,4.585)
C3': (-15.367,-88.252,2.443)
C1': (-16.768,-89.068,4.166)
C5': (-13.256,-88.870,3.755)
O4': (-15.461,-89.480,4.432)
C8: (-16.335,-87.602,6.171)
O2': (-17.325,-89.572,1.906)
C6: (-19.396,-85.994,6.772)
C5: (-18.239,-86.698,6.421)
C4: (-18.337,-87.523,5.327)
P: (-12.089,-87.280,5.469)
C4': (-14.621,-89.280,3.282)
C2': (-16.831,-88.544,2.743)
C2: (-20.401,-87.046,5.011)
N1: (-20.482,-86.202,6.033)
N3: (-19.382,-87.752,4.559)
N6: (-19.503,-85.127,7.777)
N7: (-16.956,-86.752,6.954)
N9: (-17.123,-88.068,5.160)
O5': (-13.349,-87.777,4.653)
O3': (-15.042,-88.326,1.067)
Image (generated by PyMOL):