Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SKW:A24:A17
Extra
PDB:
ATOM 1 O3' G A 23 8.213 -1.312 9.213 1.00 54.03 O
ATOM 2 P G A 24 9.509 -1.489 10.149 1.00 42.77 P
ATOM 3 OP1 G A 24 9.408 -0.485 11.208 1.00 33.29 O
ATOM 4 OP2 G A 24 10.687 -1.473 9.258 1.00 34.99 O
ATOM 5 O5' G A 24 9.298 -2.943 10.783 1.00 47.13 O
ATOM 6 C5' G A 24 8.614 -3.083 12.026 1.00 46.28 C
ATOM 7 C4' G A 24 8.073 -4.479 12.240 1.00 51.03 C
ATOM 8 O4' G A 24 7.112 -4.816 11.199 1.00 50.24 O
ATOM 9 C3' G A 24 9.089 -5.620 12.202 1.00 53.27 C
ATOM 10 O3' G A 24 9.732 -5.813 13.451 1.00 56.36 O
ATOM 11 C2' G A 24 8.224 -6.799 11.793 1.00 49.99 C
ATOM 12 O2' G A 24 7.417 -7.215 12.882 1.00 51.14 O
ATOM 13 C1' G A 24 7.316 -6.149 10.761 1.00 48.34 C
ATOM 14 N9 G A 24 7.961 -6.068 9.457 1.00 42.94 N
ATOM 15 C8 G A 24 8.479 -4.904 9.051 1.00 46.01 C
ATOM 16 N7 G A 24 9.012 -4.966 7.896 1.00 43.81 N
ATOM 17 C5 G A 24 8.831 -6.266 7.507 1.00 32.51 C
ATOM 18 C6 G A 24 9.237 -6.839 6.311 1.00 37.54 C
ATOM 19 O6 G A 24 9.818 -6.278 5.372 1.00 45.69 O
ATOM 20 N1 G A 24 8.897 -8.168 6.279 1.00 37.30 N
ATOM 21 C2 G A 24 8.237 -8.798 7.290 1.00 39.67 C
ATOM 22 N2 G A 24 7.972 -10.066 7.039 1.00 36.98 N
ATOM 23 N3 G A 24 7.843 -8.259 8.430 1.00 39.77 N
ATOM 24 C4 G A 24 8.185 -6.977 8.461 1.00 33.24 C
ATOM 25 P C A 25 11.301 -6.151 13.538 1.00 42.94 P
ATOM 26 OP1 C A 25 11.630 -6.134 14.975 1.00 41.03 O
ATOM 27 OP2 C A 25 12.013 -5.237 12.632 1.00 45.46 O
ATOM 28 O5' C A 25 11.398 -7.632 12.963 1.00 42.70 O
TER
ATOM 1 O3' C B 16 5.321 -14.965 2.613 1.00 29.71 O
ATOM 2 P A B 17 3.992 -14.199 2.168 1.00 52.40 P
ATOM 3 OP1 A B 17 2.906 -15.199 2.092 1.00 51.55 O
ATOM 4 OP2 A B 17 4.336 -13.403 0.949 1.00 16.87 O
ATOM 5 O5' A B 17 3.739 -13.248 3.398 1.00 30.74 O
ATOM 6 C5' A B 17 3.577 -13.789 4.703 1.00 35.86 C
ATOM 7 C4' A B 17 3.449 -12.695 5.739 1.00 42.56 C
ATOM 8 O4' A B 17 4.715 -12.007 5.859 1.00 49.07 O
ATOM 9 C3' A B 17 2.436 -11.605 5.417 1.00 42.06 C
ATOM 10 O3' A B 17 1.148 -11.906 5.898 1.00 47.47 O
ATOM 11 C2' A B 17 3.011 -10.369 6.060 1.00 44.93 C
ATOM 12 O2' A B 17 2.625 -10.309 7.417 1.00 56.08 O
ATOM 13 C1' A B 17 4.508 -10.624 5.982 1.00 44.91 C
ATOM 14 N9 A B 17 5.110 -9.964 4.825 1.00 35.21 N
ATOM 15 C8 A B 17 5.350 -10.433 3.552 1.00 35.59 C
ATOM 16 N7 A B 17 5.919 -9.542 2.764 1.00 32.41 N
ATOM 17 C5 A B 17 6.052 -8.441 3.612 1.00 29.89 C
ATOM 18 C6 A B 17 6.583 -7.177 3.410 1.00 28.33 C
ATOM 19 N6 A B 17 7.067 -6.817 2.222 1.00 30.69 N
ATOM 20 N1 A B 17 6.585 -6.315 4.454 1.00 27.66 N
ATOM 21 C2 A B 17 6.063 -6.705 5.619 1.00 30.33 C
ATOM 22 N3 A B 17 5.526 -7.891 5.935 1.00 31.50 N
ATOM 23 C4 A B 17 5.565 -8.697 4.875 1.00 29.95 C
ATOM 24 P U B 18 -0.134 -11.530 5.010 1.00 47.72 P
ATOM 25 OP1 U B 18 -1.344 -11.853 5.814 1.00 39.45 O
ATOM 26 OP2 U B 18 0.061 -12.199 3.698 1.00 44.46 O
ATOM 27 O5' U B 18 -0.008 -9.943 4.844 1.00 24.42 O
TER
ATOM 2 P G A 24 9.509 -1.489 10.149 1.00 42.77 P
ATOM 3 OP1 G A 24 9.408 -0.485 11.208 1.00 33.29 O
ATOM 4 OP2 G A 24 10.687 -1.473 9.258 1.00 34.99 O
ATOM 5 O5' G A 24 9.298 -2.943 10.783 1.00 47.13 O
ATOM 6 C5' G A 24 8.614 -3.083 12.026 1.00 46.28 C
ATOM 7 C4' G A 24 8.073 -4.479 12.240 1.00 51.03 C
ATOM 8 O4' G A 24 7.112 -4.816 11.199 1.00 50.24 O
ATOM 9 C3' G A 24 9.089 -5.620 12.202 1.00 53.27 C
ATOM 10 O3' G A 24 9.732 -5.813 13.451 1.00 56.36 O
ATOM 11 C2' G A 24 8.224 -6.799 11.793 1.00 49.99 C
ATOM 12 O2' G A 24 7.417 -7.215 12.882 1.00 51.14 O
ATOM 13 C1' G A 24 7.316 -6.149 10.761 1.00 48.34 C
ATOM 14 N9 G A 24 7.961 -6.068 9.457 1.00 42.94 N
ATOM 15 C8 G A 24 8.479 -4.904 9.051 1.00 46.01 C
ATOM 16 N7 G A 24 9.012 -4.966 7.896 1.00 43.81 N
ATOM 17 C5 G A 24 8.831 -6.266 7.507 1.00 32.51 C
ATOM 18 C6 G A 24 9.237 -6.839 6.311 1.00 37.54 C
ATOM 19 O6 G A 24 9.818 -6.278 5.372 1.00 45.69 O
ATOM 20 N1 G A 24 8.897 -8.168 6.279 1.00 37.30 N
ATOM 21 C2 G A 24 8.237 -8.798 7.290 1.00 39.67 C
ATOM 22 N2 G A 24 7.972 -10.066 7.039 1.00 36.98 N
ATOM 23 N3 G A 24 7.843 -8.259 8.430 1.00 39.77 N
ATOM 24 C4 G A 24 8.185 -6.977 8.461 1.00 33.24 C
ATOM 25 P C A 25 11.301 -6.151 13.538 1.00 42.94 P
ATOM 26 OP1 C A 25 11.630 -6.134 14.975 1.00 41.03 O
ATOM 27 OP2 C A 25 12.013 -5.237 12.632 1.00 45.46 O
ATOM 28 O5' C A 25 11.398 -7.632 12.963 1.00 42.70 O
TER
ATOM 1 O3' C B 16 5.321 -14.965 2.613 1.00 29.71 O
ATOM 2 P A B 17 3.992 -14.199 2.168 1.00 52.40 P
ATOM 3 OP1 A B 17 2.906 -15.199 2.092 1.00 51.55 O
ATOM 4 OP2 A B 17 4.336 -13.403 0.949 1.00 16.87 O
ATOM 5 O5' A B 17 3.739 -13.248 3.398 1.00 30.74 O
ATOM 6 C5' A B 17 3.577 -13.789 4.703 1.00 35.86 C
ATOM 7 C4' A B 17 3.449 -12.695 5.739 1.00 42.56 C
ATOM 8 O4' A B 17 4.715 -12.007 5.859 1.00 49.07 O
ATOM 9 C3' A B 17 2.436 -11.605 5.417 1.00 42.06 C
ATOM 10 O3' A B 17 1.148 -11.906 5.898 1.00 47.47 O
ATOM 11 C2' A B 17 3.011 -10.369 6.060 1.00 44.93 C
ATOM 12 O2' A B 17 2.625 -10.309 7.417 1.00 56.08 O
ATOM 13 C1' A B 17 4.508 -10.624 5.982 1.00 44.91 C
ATOM 14 N9 A B 17 5.110 -9.964 4.825 1.00 35.21 N
ATOM 15 C8 A B 17 5.350 -10.433 3.552 1.00 35.59 C
ATOM 16 N7 A B 17 5.919 -9.542 2.764 1.00 32.41 N
ATOM 17 C5 A B 17 6.052 -8.441 3.612 1.00 29.89 C
ATOM 18 C6 A B 17 6.583 -7.177 3.410 1.00 28.33 C
ATOM 19 N6 A B 17 7.067 -6.817 2.222 1.00 30.69 N
ATOM 20 N1 A B 17 6.585 -6.315 4.454 1.00 27.66 N
ATOM 21 C2 A B 17 6.063 -6.705 5.619 1.00 30.33 C
ATOM 22 N3 A B 17 5.526 -7.891 5.935 1.00 31.50 N
ATOM 23 C4 A B 17 5.565 -8.697 4.875 1.00 29.95 C
ATOM 24 P U B 18 -0.134 -11.530 5.010 1.00 47.72 P
ATOM 25 OP1 U B 18 -1.344 -11.853 5.814 1.00 39.45 O
ATOM 26 OP2 U B 18 0.061 -12.199 3.698 1.00 44.46 O
ATOM 27 O5' U B 18 -0.008 -9.943 4.844 1.00 24.42 O
TER
Atoms:
OP1: (9.408,-0.485,11.208)
OP2: (10.687,-1.473,9.258)
C3': (9.089,-5.620,12.202)
C1': (7.316,-6.149,10.761)
C5': (8.614,-3.083,12.026)
O6: (9.818,-6.278,5.372)
O4': (7.112,-4.816,11.199)
C8: (8.479,-4.904,9.051)
C2: (8.237,-8.798,7.290)
C6: (9.237,-6.839,6.311)
C5: (8.831,-6.266,7.507)
C4: (8.185,-6.977,8.461)
P: (9.509,-1.489,10.149)
C4': (8.073,-4.479,12.240)
C2': (8.224,-6.799,11.793)
O2': (7.417,-7.215,12.882)
N1: (8.897,-8.168,6.279)
N2: (7.972,-10.066,7.039)
N3: (7.843,-8.259,8.430)
N7: (9.012,-4.966,7.896)
N9: (7.961,-6.068,9.457)
O5': (9.298,-2.943,10.783)
O3': (9.732,-5.813,13.451)
OP2: (10.687,-1.473,9.258)
C3': (9.089,-5.620,12.202)
C1': (7.316,-6.149,10.761)
C5': (8.614,-3.083,12.026)
O6: (9.818,-6.278,5.372)
O4': (7.112,-4.816,11.199)
C8: (8.479,-4.904,9.051)
C2: (8.237,-8.798,7.290)
C6: (9.237,-6.839,6.311)
C5: (8.831,-6.266,7.507)
C4: (8.185,-6.977,8.461)
P: (9.509,-1.489,10.149)
C4': (8.073,-4.479,12.240)
C2': (8.224,-6.799,11.793)
O2': (7.417,-7.215,12.882)
N1: (8.897,-8.168,6.279)
N2: (7.972,-10.066,7.039)
N3: (7.843,-8.259,8.430)
N7: (9.012,-4.966,7.896)
N9: (7.961,-6.068,9.457)
O5': (9.298,-2.943,10.783)
O3': (9.732,-5.813,13.451)
OP1: (2.906,-15.199,2.092)
OP2: (4.336,-13.403,0.949)
C3': (2.436,-11.605,5.417)
C1': (4.508,-10.624,5.982)
C5': (3.577,-13.789,4.703)
O4': (4.715,-12.007,5.859)
C8: (5.350,-10.433,3.552)
O2': (2.625,-10.309,7.417)
C6: (6.583,-7.177,3.410)
C5: (6.052,-8.441,3.612)
C4: (5.565,-8.697,4.875)
P: (3.992,-14.199,2.168)
C4': (3.449,-12.695,5.739)
C2': (3.011,-10.369,6.060)
C2: (6.063,-6.705,5.619)
N1: (6.585,-6.315,4.454)
N3: (5.526,-7.891,5.935)
N6: (7.067,-6.817,2.222)
N7: (5.919,-9.542,2.764)
N9: (5.110,-9.964,4.825)
O5': (3.739,-13.248,3.398)
O3': (1.148,-11.906,5.898)
OP2: (4.336,-13.403,0.949)
C3': (2.436,-11.605,5.417)
C1': (4.508,-10.624,5.982)
C5': (3.577,-13.789,4.703)
O4': (4.715,-12.007,5.859)
C8: (5.350,-10.433,3.552)
O2': (2.625,-10.309,7.417)
C6: (6.583,-7.177,3.410)
C5: (6.052,-8.441,3.612)
C4: (5.565,-8.697,4.875)
P: (3.992,-14.199,2.168)
C4': (3.449,-12.695,5.739)
C2': (3.011,-10.369,6.060)
C2: (6.063,-6.705,5.619)
N1: (6.585,-6.315,4.454)
N3: (5.526,-7.891,5.935)
N6: (7.067,-6.817,2.222)
N7: (5.919,-9.542,2.764)
N9: (5.110,-9.964,4.825)
O5': (3.739,-13.248,3.398)
O3': (1.148,-11.906,5.898)
Image (generated by PyMOL):