Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A0:A88
Extra
PDB:
ATOM 1 P G A 0 12.037 -43.825 25.530 1.00 64.09 P
ATOM 2 OP1 G A 0 12.779 -43.627 26.803 1.00 56.05 O
ATOM 3 OP2 G A 0 10.601 -43.452 25.450 1.00 54.93 O
ATOM 4 O5' G A 0 12.849 -43.213 24.304 1.00 56.95 O
ATOM 5 C5' G A 0 14.258 -43.369 24.212 1.00 57.52 C
ATOM 6 C4' G A 0 14.686 -43.733 22.812 1.00 56.59 C
ATOM 7 O4' G A 0 14.127 -45.022 22.443 1.00 58.88 O
ATOM 8 C3' G A 0 14.217 -42.802 21.707 1.00 54.56 C
ATOM 9 O3' G A 0 15.007 -41.634 21.593 1.00 58.95 O
ATOM 10 C2' G A 0 14.269 -43.696 20.477 1.00 52.92 C
ATOM 11 O2' G A 0 15.603 -43.829 20.011 1.00 53.28 O
ATOM 12 C1' G A 0 13.825 -45.037 21.062 1.00 52.10 C
ATOM 13 N9 G A 0 12.376 -45.257 20.900 1.00 50.06 N
ATOM 14 C8 G A 0 11.450 -45.512 21.883 1.00 52.18 C
ATOM 15 N7 G A 0 10.238 -45.663 21.419 1.00 48.88 N
ATOM 16 C5 G A 0 10.372 -45.497 20.048 1.00 45.96 C
ATOM 17 C6 G A 0 9.402 -45.548 19.016 1.00 46.34 C
ATOM 18 O6 G A 0 8.187 -45.759 19.112 1.00 48.51 O
ATOM 19 N1 G A 0 9.974 -45.324 17.767 1.00 46.92 N
ATOM 20 C2 G A 0 11.306 -45.083 17.537 1.00 47.25 C
ATOM 21 N2 G A 0 11.670 -44.890 16.261 1.00 46.39 N
ATOM 22 N3 G A 0 12.217 -45.033 18.491 1.00 50.44 N
ATOM 23 C4 G A 0 11.685 -45.249 19.712 1.00 48.50 C
ATOM 24 P G A 1 14.318 -40.227 21.236 1.00 62.58 P
ATOM 25 OP1 G A 1 15.348 -39.176 21.431 1.00 59.26 O
ATOM 26 OP2 G A 1 13.059 -40.147 22.019 1.00 54.17 O
ATOM 27 O5' G A 1 13.982 -40.377 19.686 1.00 55.87 O
TER
ATOM 1 O3' C B 87 8.232 -48.456 10.223 1.00 46.26 O
ATOM 2 P A B 88 8.381 -49.994 10.668 1.00 43.72 P
ATOM 3 OP1 A B 88 8.805 -50.756 9.468 1.00 53.02 O
ATOM 4 OP2 A B 88 7.118 -50.376 11.343 1.00 48.50 O
ATOM 5 O5' A B 88 9.567 -49.948 11.730 1.00 37.53 O
ATOM 6 C5' A B 88 10.875 -49.551 11.345 1.00 37.98 C
ATOM 7 C4' A B 88 11.773 -49.359 12.541 1.00 37.87 C
ATOM 8 O4' A B 88 11.216 -48.348 13.420 1.00 41.33 O
ATOM 9 C3' A B 88 11.954 -50.566 13.446 1.00 40.07 C
ATOM 10 O3' A B 88 12.889 -51.502 12.939 1.00 42.30 O
ATOM 11 C2' A B 88 12.377 -49.929 14.765 1.00 41.64 C
ATOM 12 O2' A B 88 13.753 -49.576 14.735 1.00 36.01 O
ATOM 13 C1' A B 88 11.549 -48.643 14.762 1.00 41.83 C
ATOM 14 N9 A B 88 10.304 -48.785 15.539 1.00 41.77 N
ATOM 15 C8 A B 88 9.033 -49.020 15.077 1.00 42.41 C
ATOM 16 N7 A B 88 8.134 -49.097 16.029 1.00 42.49 N
ATOM 17 C5 A B 88 8.865 -48.899 17.191 1.00 42.77 C
ATOM 18 C6 A B 88 8.495 -48.861 18.544 1.00 44.86 C
ATOM 19 N6 A B 88 7.242 -49.030 18.968 1.00 49.35 N
ATOM 20 N1 A B 88 9.467 -48.641 19.456 1.00 44.67 N
ATOM 21 C2 A B 88 10.724 -48.472 19.026 1.00 43.24 C
ATOM 22 N3 A B 88 11.195 -48.483 17.782 1.00 42.98 N
ATOM 23 C4 A B 88 10.202 -48.703 16.904 1.00 40.43 C
TER
ATOM 2 OP1 G A 0 12.779 -43.627 26.803 1.00 56.05 O
ATOM 3 OP2 G A 0 10.601 -43.452 25.450 1.00 54.93 O
ATOM 4 O5' G A 0 12.849 -43.213 24.304 1.00 56.95 O
ATOM 5 C5' G A 0 14.258 -43.369 24.212 1.00 57.52 C
ATOM 6 C4' G A 0 14.686 -43.733 22.812 1.00 56.59 C
ATOM 7 O4' G A 0 14.127 -45.022 22.443 1.00 58.88 O
ATOM 8 C3' G A 0 14.217 -42.802 21.707 1.00 54.56 C
ATOM 9 O3' G A 0 15.007 -41.634 21.593 1.00 58.95 O
ATOM 10 C2' G A 0 14.269 -43.696 20.477 1.00 52.92 C
ATOM 11 O2' G A 0 15.603 -43.829 20.011 1.00 53.28 O
ATOM 12 C1' G A 0 13.825 -45.037 21.062 1.00 52.10 C
ATOM 13 N9 G A 0 12.376 -45.257 20.900 1.00 50.06 N
ATOM 14 C8 G A 0 11.450 -45.512 21.883 1.00 52.18 C
ATOM 15 N7 G A 0 10.238 -45.663 21.419 1.00 48.88 N
ATOM 16 C5 G A 0 10.372 -45.497 20.048 1.00 45.96 C
ATOM 17 C6 G A 0 9.402 -45.548 19.016 1.00 46.34 C
ATOM 18 O6 G A 0 8.187 -45.759 19.112 1.00 48.51 O
ATOM 19 N1 G A 0 9.974 -45.324 17.767 1.00 46.92 N
ATOM 20 C2 G A 0 11.306 -45.083 17.537 1.00 47.25 C
ATOM 21 N2 G A 0 11.670 -44.890 16.261 1.00 46.39 N
ATOM 22 N3 G A 0 12.217 -45.033 18.491 1.00 50.44 N
ATOM 23 C4 G A 0 11.685 -45.249 19.712 1.00 48.50 C
ATOM 24 P G A 1 14.318 -40.227 21.236 1.00 62.58 P
ATOM 25 OP1 G A 1 15.348 -39.176 21.431 1.00 59.26 O
ATOM 26 OP2 G A 1 13.059 -40.147 22.019 1.00 54.17 O
ATOM 27 O5' G A 1 13.982 -40.377 19.686 1.00 55.87 O
TER
ATOM 1 O3' C B 87 8.232 -48.456 10.223 1.00 46.26 O
ATOM 2 P A B 88 8.381 -49.994 10.668 1.00 43.72 P
ATOM 3 OP1 A B 88 8.805 -50.756 9.468 1.00 53.02 O
ATOM 4 OP2 A B 88 7.118 -50.376 11.343 1.00 48.50 O
ATOM 5 O5' A B 88 9.567 -49.948 11.730 1.00 37.53 O
ATOM 6 C5' A B 88 10.875 -49.551 11.345 1.00 37.98 C
ATOM 7 C4' A B 88 11.773 -49.359 12.541 1.00 37.87 C
ATOM 8 O4' A B 88 11.216 -48.348 13.420 1.00 41.33 O
ATOM 9 C3' A B 88 11.954 -50.566 13.446 1.00 40.07 C
ATOM 10 O3' A B 88 12.889 -51.502 12.939 1.00 42.30 O
ATOM 11 C2' A B 88 12.377 -49.929 14.765 1.00 41.64 C
ATOM 12 O2' A B 88 13.753 -49.576 14.735 1.00 36.01 O
ATOM 13 C1' A B 88 11.549 -48.643 14.762 1.00 41.83 C
ATOM 14 N9 A B 88 10.304 -48.785 15.539 1.00 41.77 N
ATOM 15 C8 A B 88 9.033 -49.020 15.077 1.00 42.41 C
ATOM 16 N7 A B 88 8.134 -49.097 16.029 1.00 42.49 N
ATOM 17 C5 A B 88 8.865 -48.899 17.191 1.00 42.77 C
ATOM 18 C6 A B 88 8.495 -48.861 18.544 1.00 44.86 C
ATOM 19 N6 A B 88 7.242 -49.030 18.968 1.00 49.35 N
ATOM 20 N1 A B 88 9.467 -48.641 19.456 1.00 44.67 N
ATOM 21 C2 A B 88 10.724 -48.472 19.026 1.00 43.24 C
ATOM 22 N3 A B 88 11.195 -48.483 17.782 1.00 42.98 N
ATOM 23 C4 A B 88 10.202 -48.703 16.904 1.00 40.43 C
TER
Atoms:
OP1: (12.779,-43.627,26.803)
OP2: (10.601,-43.452,25.450)
C3': (14.217,-42.802,21.707)
C1': (13.825,-45.037,21.062)
C5': (14.258,-43.369,24.212)
O6: (8.187,-45.759,19.112)
O4': (14.127,-45.022,22.443)
C8: (11.450,-45.512,21.883)
C2: (11.306,-45.083,17.537)
C6: (9.402,-45.548,19.016)
C5: (10.372,-45.497,20.048)
C4: (11.685,-45.249,19.712)
P: (12.037,-43.825,25.530)
C4': (14.686,-43.733,22.812)
C2': (14.269,-43.696,20.477)
O2': (15.603,-43.829,20.011)
N1: (9.974,-45.324,17.767)
N2: (11.670,-44.890,16.261)
N3: (12.217,-45.033,18.491)
N7: (10.238,-45.663,21.419)
N9: (12.376,-45.257,20.900)
O5': (12.849,-43.213,24.304)
O3': (15.007,-41.634,21.593)
OP2: (10.601,-43.452,25.450)
C3': (14.217,-42.802,21.707)
C1': (13.825,-45.037,21.062)
C5': (14.258,-43.369,24.212)
O6: (8.187,-45.759,19.112)
O4': (14.127,-45.022,22.443)
C8: (11.450,-45.512,21.883)
C2: (11.306,-45.083,17.537)
C6: (9.402,-45.548,19.016)
C5: (10.372,-45.497,20.048)
C4: (11.685,-45.249,19.712)
P: (12.037,-43.825,25.530)
C4': (14.686,-43.733,22.812)
C2': (14.269,-43.696,20.477)
O2': (15.603,-43.829,20.011)
N1: (9.974,-45.324,17.767)
N2: (11.670,-44.890,16.261)
N3: (12.217,-45.033,18.491)
N7: (10.238,-45.663,21.419)
N9: (12.376,-45.257,20.900)
O5': (12.849,-43.213,24.304)
O3': (15.007,-41.634,21.593)
OP1: (8.805,-50.756,9.468)
OP2: (7.118,-50.376,11.343)
C3': (11.954,-50.566,13.446)
C1': (11.549,-48.643,14.762)
C5': (10.875,-49.551,11.345)
O4': (11.216,-48.348,13.420)
C8: (9.033,-49.020,15.077)
O2': (13.753,-49.576,14.735)
C6: (8.495,-48.861,18.544)
C5: (8.865,-48.899,17.191)
C4: (10.202,-48.703,16.904)
P: (8.381,-49.994,10.668)
C4': (11.773,-49.359,12.541)
C2': (12.377,-49.929,14.765)
C2: (10.724,-48.472,19.026)
N1: (9.467,-48.641,19.456)
N3: (11.195,-48.483,17.782)
N6: (7.242,-49.030,18.968)
N7: (8.134,-49.097,16.029)
N9: (10.304,-48.785,15.539)
O5': (9.567,-49.948,11.730)
O3': (12.889,-51.502,12.939)
OP2: (7.118,-50.376,11.343)
C3': (11.954,-50.566,13.446)
C1': (11.549,-48.643,14.762)
C5': (10.875,-49.551,11.345)
O4': (11.216,-48.348,13.420)
C8: (9.033,-49.020,15.077)
O2': (13.753,-49.576,14.735)
C6: (8.495,-48.861,18.544)
C5: (8.865,-48.899,17.191)
C4: (10.202,-48.703,16.904)
P: (8.381,-49.994,10.668)
C4': (11.773,-49.359,12.541)
C2': (12.377,-49.929,14.765)
C2: (10.724,-48.472,19.026)
N1: (9.467,-48.641,19.456)
N3: (11.195,-48.483,17.782)
N6: (7.242,-49.030,18.968)
N7: (8.134,-49.097,16.029)
N9: (10.304,-48.785,15.539)
O5': (9.567,-49.948,11.730)
O3': (12.889,-51.502,12.939)
Image (generated by PyMOL):