Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1ZDK:R17:R2
Extra
PDB:
ATOM 1 O3' U A 16 16.125 85.235 39.980 0.50124.27 O
ATOM 2 P G A 17 14.852 84.238 40.031 0.50126.92 P
ATOM 3 OP1 G A 17 15.329 82.858 40.467 0.50127.31 O
ATOM 4 OP2 G A 17 14.109 84.404 38.717 0.50126.95 O
ATOM 5 O5' G A 17 13.905 84.798 41.177 0.00124.96 O
ATOM 6 C5' G A 17 14.255 84.649 42.560 0.00123.30 C
ATOM 7 C4' G A 17 13.919 85.911 43.300 0.00122.58 C
ATOM 8 O4' G A 17 14.481 87.013 42.537 0.00121.79 O
ATOM 9 C3' G A 17 12.433 86.225 43.379 0.00122.74 C
ATOM 10 O3' G A 17 11.780 85.593 44.475 0.00124.90 O
ATOM 11 C2' G A 17 12.420 87.743 43.438 0.00121.77 C
ATOM 12 O2' G A 17 12.728 88.254 44.722 0.00121.27 O
ATOM 13 C1' G A 17 13.548 88.077 42.462 0.00121.21 C
ATOM 14 N9 G A 17 13.017 88.107 41.102 0.50120.71 N
ATOM 15 C8 G A 17 13.427 87.344 40.024 0.50120.45 C
ATOM 16 N7 G A 17 12.731 87.568 38.938 0.50119.84 N
ATOM 17 C5 G A 17 11.808 88.543 39.316 0.50120.06 C
ATOM 18 C6 G A 17 10.771 89.182 38.560 0.50119.76 C
ATOM 19 O6 G A 17 10.466 89.008 37.367 0.50119.23 O
ATOM 20 N1 G A 17 10.057 90.103 39.336 0.50119.52 N
ATOM 21 C2 G A 17 10.306 90.375 40.669 0.50119.61 C
ATOM 22 N2 G A 17 9.502 91.300 41.248 0.50118.67 N
ATOM 23 N3 G A 17 11.271 89.787 41.385 0.50120.16 N
ATOM 24 C4 G A 17 11.976 88.889 40.648 0.50120.32 C
ATOM 25 P U A 18 10.289 85.023 44.272 0.50127.23 P
ATOM 26 OP1 U A 18 10.023 83.882 45.228 0.50126.38 O
ATOM 27 OP2 U A 18 10.116 84.794 42.785 0.50126.82 O
ATOM 28 O5' U A 18 9.349 86.252 44.692 0.50128.70 O
TER
ATOM 1 O3' C B 1 7.050 98.498 37.782 0.50129.78 O
ATOM 2 P A B 2 8.474 99.216 38.135 0.50129.93 P
ATOM 3 OP1 A B 2 8.160 100.449 38.962 0.50129.13 O
ATOM 4 OP2 A B 2 9.237 99.386 36.839 0.50129.10 O
ATOM 5 O5' A B 2 9.268 98.161 39.058 0.50129.80 O
ATOM 6 C5' A B 2 9.008 98.051 40.497 0.50129.04 C
ATOM 7 C4' A B 2 9.849 96.936 41.115 0.50128.59 C
ATOM 8 O4' A B 2 9.416 95.645 40.595 0.50127.49 O
ATOM 9 C3' A B 2 11.345 97.029 40.825 0.50128.83 C
ATOM 10 O3' A B 2 11.987 97.752 41.873 0.50131.12 O
ATOM 11 C2' A B 2 11.809 95.566 40.833 0.50127.45 C
ATOM 12 O2' A B 2 12.240 95.095 42.099 0.50127.10 O
ATOM 13 C1' A B 2 10.557 94.813 40.381 0.50125.59 C
ATOM 14 N9 A B 2 10.580 94.453 38.961 0.50121.74 N
ATOM 15 C8 A B 2 9.765 94.937 37.963 0.50120.52 C
ATOM 16 N7 A B 2 10.056 94.479 36.772 0.50119.17 N
ATOM 17 C5 A B 2 11.130 93.630 36.998 0.50118.40 C
ATOM 18 C6 A B 2 11.904 92.851 36.134 0.50117.67 C
ATOM 19 N6 A B 2 11.697 92.808 34.808 0.50117.20 N
ATOM 20 N1 A B 2 12.913 92.116 36.669 0.50117.19 N
ATOM 21 C2 A B 2 13.111 92.176 38.000 0.50116.61 C
ATOM 22 N3 A B 2 12.448 92.877 38.922 0.50117.87 N
ATOM 23 C4 A B 2 11.456 93.592 38.344 0.50119.34 C
ATOM 24 P U B 3 12.711 99.160 41.561 0.50132.99 P
ATOM 25 OP1 U B 3 12.108 100.169 42.514 0.50133.82 O
ATOM 26 OP2 U B 3 12.640 99.411 40.063 0.50132.40 O
ATOM 27 O5' U B 3 14.244 98.914 41.957 0.50132.19 O
TER
ATOM 2 P G A 17 14.852 84.238 40.031 0.50126.92 P
ATOM 3 OP1 G A 17 15.329 82.858 40.467 0.50127.31 O
ATOM 4 OP2 G A 17 14.109 84.404 38.717 0.50126.95 O
ATOM 5 O5' G A 17 13.905 84.798 41.177 0.00124.96 O
ATOM 6 C5' G A 17 14.255 84.649 42.560 0.00123.30 C
ATOM 7 C4' G A 17 13.919 85.911 43.300 0.00122.58 C
ATOM 8 O4' G A 17 14.481 87.013 42.537 0.00121.79 O
ATOM 9 C3' G A 17 12.433 86.225 43.379 0.00122.74 C
ATOM 10 O3' G A 17 11.780 85.593 44.475 0.00124.90 O
ATOM 11 C2' G A 17 12.420 87.743 43.438 0.00121.77 C
ATOM 12 O2' G A 17 12.728 88.254 44.722 0.00121.27 O
ATOM 13 C1' G A 17 13.548 88.077 42.462 0.00121.21 C
ATOM 14 N9 G A 17 13.017 88.107 41.102 0.50120.71 N
ATOM 15 C8 G A 17 13.427 87.344 40.024 0.50120.45 C
ATOM 16 N7 G A 17 12.731 87.568 38.938 0.50119.84 N
ATOM 17 C5 G A 17 11.808 88.543 39.316 0.50120.06 C
ATOM 18 C6 G A 17 10.771 89.182 38.560 0.50119.76 C
ATOM 19 O6 G A 17 10.466 89.008 37.367 0.50119.23 O
ATOM 20 N1 G A 17 10.057 90.103 39.336 0.50119.52 N
ATOM 21 C2 G A 17 10.306 90.375 40.669 0.50119.61 C
ATOM 22 N2 G A 17 9.502 91.300 41.248 0.50118.67 N
ATOM 23 N3 G A 17 11.271 89.787 41.385 0.50120.16 N
ATOM 24 C4 G A 17 11.976 88.889 40.648 0.50120.32 C
ATOM 25 P U A 18 10.289 85.023 44.272 0.50127.23 P
ATOM 26 OP1 U A 18 10.023 83.882 45.228 0.50126.38 O
ATOM 27 OP2 U A 18 10.116 84.794 42.785 0.50126.82 O
ATOM 28 O5' U A 18 9.349 86.252 44.692 0.50128.70 O
TER
ATOM 1 O3' C B 1 7.050 98.498 37.782 0.50129.78 O
ATOM 2 P A B 2 8.474 99.216 38.135 0.50129.93 P
ATOM 3 OP1 A B 2 8.160 100.449 38.962 0.50129.13 O
ATOM 4 OP2 A B 2 9.237 99.386 36.839 0.50129.10 O
ATOM 5 O5' A B 2 9.268 98.161 39.058 0.50129.80 O
ATOM 6 C5' A B 2 9.008 98.051 40.497 0.50129.04 C
ATOM 7 C4' A B 2 9.849 96.936 41.115 0.50128.59 C
ATOM 8 O4' A B 2 9.416 95.645 40.595 0.50127.49 O
ATOM 9 C3' A B 2 11.345 97.029 40.825 0.50128.83 C
ATOM 10 O3' A B 2 11.987 97.752 41.873 0.50131.12 O
ATOM 11 C2' A B 2 11.809 95.566 40.833 0.50127.45 C
ATOM 12 O2' A B 2 12.240 95.095 42.099 0.50127.10 O
ATOM 13 C1' A B 2 10.557 94.813 40.381 0.50125.59 C
ATOM 14 N9 A B 2 10.580 94.453 38.961 0.50121.74 N
ATOM 15 C8 A B 2 9.765 94.937 37.963 0.50120.52 C
ATOM 16 N7 A B 2 10.056 94.479 36.772 0.50119.17 N
ATOM 17 C5 A B 2 11.130 93.630 36.998 0.50118.40 C
ATOM 18 C6 A B 2 11.904 92.851 36.134 0.50117.67 C
ATOM 19 N6 A B 2 11.697 92.808 34.808 0.50117.20 N
ATOM 20 N1 A B 2 12.913 92.116 36.669 0.50117.19 N
ATOM 21 C2 A B 2 13.111 92.176 38.000 0.50116.61 C
ATOM 22 N3 A B 2 12.448 92.877 38.922 0.50117.87 N
ATOM 23 C4 A B 2 11.456 93.592 38.344 0.50119.34 C
ATOM 24 P U B 3 12.711 99.160 41.561 0.50132.99 P
ATOM 25 OP1 U B 3 12.108 100.169 42.514 0.50133.82 O
ATOM 26 OP2 U B 3 12.640 99.411 40.063 0.50132.40 O
ATOM 27 O5' U B 3 14.244 98.914 41.957 0.50132.19 O
TER
Atoms:
OP1: (15.329,82.858,40.467)
OP2: (14.109,84.404,38.717)
C3': (12.433,86.225,43.379)
C1': (13.548,88.077,42.462)
C5': (14.255,84.649,42.560)
O6: (10.466,89.008,37.367)
O4': (14.481,87.013,42.537)
C8: (13.427,87.344,40.024)
C2: (10.306,90.375,40.669)
C6: (10.771,89.182,38.560)
C5: (11.808,88.543,39.316)
C4: (11.976,88.889,40.648)
P: (14.852,84.238,40.031)
C4': (13.919,85.911,43.300)
C2': (12.420,87.743,43.438)
O2': (12.728,88.254,44.722)
N1: (10.057,90.103,39.336)
N2: (9.502,91.300,41.248)
N3: (11.271,89.787,41.385)
N7: (12.731,87.568,38.938)
N9: (13.017,88.107,41.102)
O5': (13.905,84.798,41.177)
O3': (11.780,85.593,44.475)
OP2: (14.109,84.404,38.717)
C3': (12.433,86.225,43.379)
C1': (13.548,88.077,42.462)
C5': (14.255,84.649,42.560)
O6: (10.466,89.008,37.367)
O4': (14.481,87.013,42.537)
C8: (13.427,87.344,40.024)
C2: (10.306,90.375,40.669)
C6: (10.771,89.182,38.560)
C5: (11.808,88.543,39.316)
C4: (11.976,88.889,40.648)
P: (14.852,84.238,40.031)
C4': (13.919,85.911,43.300)
C2': (12.420,87.743,43.438)
O2': (12.728,88.254,44.722)
N1: (10.057,90.103,39.336)
N2: (9.502,91.300,41.248)
N3: (11.271,89.787,41.385)
N7: (12.731,87.568,38.938)
N9: (13.017,88.107,41.102)
O5': (13.905,84.798,41.177)
O3': (11.780,85.593,44.475)
OP1: (8.160,100.449,38.962)
OP2: (9.237,99.386,36.839)
C3': (11.345,97.029,40.825)
C1': (10.557,94.813,40.381)
C5': (9.008,98.051,40.497)
O4': (9.416,95.645,40.595)
C8: (9.765,94.937,37.963)
O2': (12.240,95.095,42.099)
C6: (11.904,92.851,36.134)
C5: (11.130,93.630,36.998)
C4: (11.456,93.592,38.344)
P: (8.474,99.216,38.135)
C4': (9.849,96.936,41.115)
C2': (11.809,95.566,40.833)
C2: (13.111,92.176,38.000)
N1: (12.913,92.116,36.669)
N3: (12.448,92.877,38.922)
N6: (11.697,92.808,34.808)
N7: (10.056,94.479,36.772)
N9: (10.580,94.453,38.961)
O5': (9.268,98.161,39.058)
O3': (11.987,97.752,41.873)
OP2: (9.237,99.386,36.839)
C3': (11.345,97.029,40.825)
C1': (10.557,94.813,40.381)
C5': (9.008,98.051,40.497)
O4': (9.416,95.645,40.595)
C8: (9.765,94.937,37.963)
O2': (12.240,95.095,42.099)
C6: (11.904,92.851,36.134)
C5: (11.130,93.630,36.998)
C4: (11.456,93.592,38.344)
P: (8.474,99.216,38.135)
C4': (9.849,96.936,41.115)
C2': (11.809,95.566,40.833)
C2: (13.111,92.176,38.000)
N1: (12.913,92.116,36.669)
N3: (12.448,92.877,38.922)
N6: (11.697,92.808,34.808)
N7: (10.056,94.479,36.772)
N9: (10.580,94.453,38.961)
O5': (9.268,98.161,39.058)
O3': (11.987,97.752,41.873)
Image (generated by PyMOL):