Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:X59:X28
Extra
PDB:
ATOM 1 O3' U A 58 -8.785 -25.780 11.713 1.00 34.18 O
ATOM 2 P A A 59 -8.067 -26.205 13.078 1.00 34.53 P
ATOM 3 OP1 A A 59 -6.663 -26.569 12.780 1.00 34.89 O
ATOM 4 OP2 A A 59 -8.948 -27.173 13.771 1.00 34.83 O
ATOM 5 O5' A A 59 -8.085 -24.839 13.907 1.00 32.41 O
ATOM 6 C5' A A 59 -7.909 -24.841 15.315 1.00 30.38 C
ATOM 7 C4' A A 59 -7.954 -23.416 15.831 1.00 29.24 C
ATOM 8 O4' A A 59 -6.813 -22.692 15.311 1.00 28.36 O
ATOM 9 C3' A A 59 -9.165 -22.624 15.365 1.00 28.80 C
ATOM 10 O3' A A 59 -10.224 -22.796 16.294 1.00 29.62 O
ATOM 11 C2' A A 59 -8.652 -21.185 15.360 1.00 28.21 C
ATOM 12 O2' A A 59 -8.708 -20.589 16.641 1.00 27.47 O
ATOM 13 C1' A A 59 -7.193 -21.371 14.967 1.00 27.79 C
ATOM 14 N9 A A 59 -6.867 -21.132 13.563 1.00 27.32 N
ATOM 15 C8 A A 59 -6.420 -22.067 12.670 1.00 27.80 C
ATOM 16 N7 A A 59 -6.164 -21.585 11.479 1.00 27.63 N
ATOM 17 C5 A A 59 -6.448 -20.234 11.600 1.00 26.98 C
ATOM 18 C6 A A 59 -6.368 -19.170 10.681 1.00 26.06 C
ATOM 19 N6 A A 59 -5.965 -19.328 9.414 1.00 25.51 N
ATOM 20 N1 A A 59 -6.732 -17.944 11.112 1.00 25.90 N
ATOM 21 C2 A A 59 -7.128 -17.799 12.384 1.00 27.16 C
ATOM 22 N3 A A 59 -7.237 -18.723 13.342 1.00 27.15 N
ATOM 23 C4 A A 59 -6.876 -19.934 12.882 1.00 27.12 C
ATOM 24 P A A 60 -11.740 -22.939 15.799 1.00 29.16 P
ATOM 25 OP1 A A 60 -12.564 -23.208 16.995 1.00 30.09 O
ATOM 26 OP2 A A 60 -11.766 -23.877 14.657 1.00 29.82 O
ATOM 27 O5' A A 60 -12.096 -21.484 15.242 1.00 29.35 O
TER
ATOM 1 O3' G B 27 -0.956 -18.219 5.922 1.00 31.83 O
ATOM 2 P C B 28 -1.729 -18.390 4.537 1.00 31.32 P
ATOM 3 OP1 C B 28 -1.317 -19.682 3.948 1.00 31.09 O
ATOM 4 OP2 C B 28 -1.569 -17.143 3.755 1.00 32.49 O
ATOM 5 O5' C B 28 -3.253 -18.471 5.007 1.00 30.77 O
ATOM 6 C5' C B 28 -3.734 -19.579 5.763 1.00 32.30 C
ATOM 7 C4' C B 28 -5.249 -19.538 5.844 1.00 33.02 C
ATOM 8 O4' C B 28 -5.666 -18.401 6.644 1.00 33.47 O
ATOM 9 C3' C B 28 -5.945 -19.308 4.513 1.00 33.65 C
ATOM 10 O3' C B 28 -6.043 -20.527 3.778 1.00 33.89 O
ATOM 11 C2' C B 28 -7.296 -18.775 4.977 1.00 33.36 C
ATOM 12 O2' C B 28 -8.152 -19.799 5.455 1.00 34.49 O
ATOM 13 C1' C B 28 -6.874 -17.867 6.131 1.00 33.59 C
ATOM 14 N1 C B 28 -6.659 -16.418 5.776 1.00 33.52 N
ATOM 15 C2 C B 28 -7.746 -15.534 5.765 1.00 33.57 C
ATOM 16 O2 C B 28 -8.877 -15.961 6.033 1.00 33.85 O
ATOM 17 N3 C B 28 -7.533 -14.228 5.457 1.00 33.82 N
ATOM 18 C4 C B 28 -6.299 -13.800 5.176 1.00 33.38 C
ATOM 19 N4 C B 28 -6.138 -12.508 4.873 1.00 33.98 N
ATOM 20 C5 C B 28 -5.178 -14.683 5.183 1.00 33.80 C
ATOM 21 C6 C B 28 -5.401 -15.966 5.491 1.00 33.16 C
ATOM 22 P U B 29 -5.977 -20.490 2.178 1.00 35.02 P
ATOM 23 OP1 U B 29 -5.821 -21.884 1.700 1.00 34.96 O
ATOM 24 OP2 U B 29 -5.009 -19.448 1.767 1.00 33.16 O
ATOM 25 O5' U B 29 -7.432 -19.959 1.790 1.00 34.24 O
TER
ATOM 2 P A A 59 -8.067 -26.205 13.078 1.00 34.53 P
ATOM 3 OP1 A A 59 -6.663 -26.569 12.780 1.00 34.89 O
ATOM 4 OP2 A A 59 -8.948 -27.173 13.771 1.00 34.83 O
ATOM 5 O5' A A 59 -8.085 -24.839 13.907 1.00 32.41 O
ATOM 6 C5' A A 59 -7.909 -24.841 15.315 1.00 30.38 C
ATOM 7 C4' A A 59 -7.954 -23.416 15.831 1.00 29.24 C
ATOM 8 O4' A A 59 -6.813 -22.692 15.311 1.00 28.36 O
ATOM 9 C3' A A 59 -9.165 -22.624 15.365 1.00 28.80 C
ATOM 10 O3' A A 59 -10.224 -22.796 16.294 1.00 29.62 O
ATOM 11 C2' A A 59 -8.652 -21.185 15.360 1.00 28.21 C
ATOM 12 O2' A A 59 -8.708 -20.589 16.641 1.00 27.47 O
ATOM 13 C1' A A 59 -7.193 -21.371 14.967 1.00 27.79 C
ATOM 14 N9 A A 59 -6.867 -21.132 13.563 1.00 27.32 N
ATOM 15 C8 A A 59 -6.420 -22.067 12.670 1.00 27.80 C
ATOM 16 N7 A A 59 -6.164 -21.585 11.479 1.00 27.63 N
ATOM 17 C5 A A 59 -6.448 -20.234 11.600 1.00 26.98 C
ATOM 18 C6 A A 59 -6.368 -19.170 10.681 1.00 26.06 C
ATOM 19 N6 A A 59 -5.965 -19.328 9.414 1.00 25.51 N
ATOM 20 N1 A A 59 -6.732 -17.944 11.112 1.00 25.90 N
ATOM 21 C2 A A 59 -7.128 -17.799 12.384 1.00 27.16 C
ATOM 22 N3 A A 59 -7.237 -18.723 13.342 1.00 27.15 N
ATOM 23 C4 A A 59 -6.876 -19.934 12.882 1.00 27.12 C
ATOM 24 P A A 60 -11.740 -22.939 15.799 1.00 29.16 P
ATOM 25 OP1 A A 60 -12.564 -23.208 16.995 1.00 30.09 O
ATOM 26 OP2 A A 60 -11.766 -23.877 14.657 1.00 29.82 O
ATOM 27 O5' A A 60 -12.096 -21.484 15.242 1.00 29.35 O
TER
ATOM 1 O3' G B 27 -0.956 -18.219 5.922 1.00 31.83 O
ATOM 2 P C B 28 -1.729 -18.390 4.537 1.00 31.32 P
ATOM 3 OP1 C B 28 -1.317 -19.682 3.948 1.00 31.09 O
ATOM 4 OP2 C B 28 -1.569 -17.143 3.755 1.00 32.49 O
ATOM 5 O5' C B 28 -3.253 -18.471 5.007 1.00 30.77 O
ATOM 6 C5' C B 28 -3.734 -19.579 5.763 1.00 32.30 C
ATOM 7 C4' C B 28 -5.249 -19.538 5.844 1.00 33.02 C
ATOM 8 O4' C B 28 -5.666 -18.401 6.644 1.00 33.47 O
ATOM 9 C3' C B 28 -5.945 -19.308 4.513 1.00 33.65 C
ATOM 10 O3' C B 28 -6.043 -20.527 3.778 1.00 33.89 O
ATOM 11 C2' C B 28 -7.296 -18.775 4.977 1.00 33.36 C
ATOM 12 O2' C B 28 -8.152 -19.799 5.455 1.00 34.49 O
ATOM 13 C1' C B 28 -6.874 -17.867 6.131 1.00 33.59 C
ATOM 14 N1 C B 28 -6.659 -16.418 5.776 1.00 33.52 N
ATOM 15 C2 C B 28 -7.746 -15.534 5.765 1.00 33.57 C
ATOM 16 O2 C B 28 -8.877 -15.961 6.033 1.00 33.85 O
ATOM 17 N3 C B 28 -7.533 -14.228 5.457 1.00 33.82 N
ATOM 18 C4 C B 28 -6.299 -13.800 5.176 1.00 33.38 C
ATOM 19 N4 C B 28 -6.138 -12.508 4.873 1.00 33.98 N
ATOM 20 C5 C B 28 -5.178 -14.683 5.183 1.00 33.80 C
ATOM 21 C6 C B 28 -5.401 -15.966 5.491 1.00 33.16 C
ATOM 22 P U B 29 -5.977 -20.490 2.178 1.00 35.02 P
ATOM 23 OP1 U B 29 -5.821 -21.884 1.700 1.00 34.96 O
ATOM 24 OP2 U B 29 -5.009 -19.448 1.767 1.00 33.16 O
ATOM 25 O5' U B 29 -7.432 -19.959 1.790 1.00 34.24 O
TER
Atoms:
OP1: (-6.663,-26.569,12.780)
OP2: (-8.948,-27.173,13.771)
C3': (-9.165,-22.624,15.365)
C1': (-7.193,-21.371,14.967)
C5': (-7.909,-24.841,15.315)
O4': (-6.813,-22.692,15.311)
C8: (-6.420,-22.067,12.670)
O2': (-8.708,-20.589,16.641)
C6: (-6.368,-19.170,10.681)
C5: (-6.448,-20.234,11.600)
C4: (-6.876,-19.934,12.882)
P: (-8.067,-26.205,13.078)
C4': (-7.954,-23.416,15.831)
C2': (-8.652,-21.185,15.360)
C2: (-7.128,-17.799,12.384)
N1: (-6.732,-17.944,11.112)
N3: (-7.237,-18.723,13.342)
N6: (-5.965,-19.328,9.414)
N7: (-6.164,-21.585,11.479)
N9: (-6.867,-21.132,13.563)
O5': (-8.085,-24.839,13.907)
O3': (-10.224,-22.796,16.294)
OP2: (-8.948,-27.173,13.771)
C3': (-9.165,-22.624,15.365)
C1': (-7.193,-21.371,14.967)
C5': (-7.909,-24.841,15.315)
O4': (-6.813,-22.692,15.311)
C8: (-6.420,-22.067,12.670)
O2': (-8.708,-20.589,16.641)
C6: (-6.368,-19.170,10.681)
C5: (-6.448,-20.234,11.600)
C4: (-6.876,-19.934,12.882)
P: (-8.067,-26.205,13.078)
C4': (-7.954,-23.416,15.831)
C2': (-8.652,-21.185,15.360)
C2: (-7.128,-17.799,12.384)
N1: (-6.732,-17.944,11.112)
N3: (-7.237,-18.723,13.342)
N6: (-5.965,-19.328,9.414)
N7: (-6.164,-21.585,11.479)
N9: (-6.867,-21.132,13.563)
O5': (-8.085,-24.839,13.907)
O3': (-10.224,-22.796,16.294)
C2: (-7.746,-15.534,5.765)
OP1: (-1.317,-19.682,3.948)
OP2: (-1.569,-17.143,3.755)
C4: (-6.299,-13.800,5.176)
O5': (-3.253,-18.471,5.007)
C3': (-5.945,-19.308,4.513)
C1': (-6.874,-17.867,6.131)
O4': (-5.666,-18.401,6.644)
C5': (-3.734,-19.579,5.763)
P: (-1.729,-18.390,4.537)
O2: (-8.877,-15.961,6.033)
C4': (-5.249,-19.538,5.844)
C2': (-7.296,-18.775,4.977)
O2': (-8.152,-19.799,5.455)
N1: (-6.659,-16.418,5.776)
N3: (-7.533,-14.228,5.457)
N4: (-6.138,-12.508,4.873)
C6: (-5.401,-15.966,5.491)
C5: (-5.178,-14.683,5.183)
O3': (-6.043,-20.527,3.778)
OP1: (-1.317,-19.682,3.948)
OP2: (-1.569,-17.143,3.755)
C4: (-6.299,-13.800,5.176)
O5': (-3.253,-18.471,5.007)
C3': (-5.945,-19.308,4.513)
C1': (-6.874,-17.867,6.131)
O4': (-5.666,-18.401,6.644)
C5': (-3.734,-19.579,5.763)
P: (-1.729,-18.390,4.537)
O2: (-8.877,-15.961,6.033)
C4': (-5.249,-19.538,5.844)
C2': (-7.296,-18.775,4.977)
O2': (-8.152,-19.799,5.455)
N1: (-6.659,-16.418,5.776)
N3: (-7.533,-14.228,5.457)
N4: (-6.138,-12.508,4.873)
C6: (-5.401,-15.966,5.491)
C5: (-5.178,-14.683,5.183)
O3': (-6.043,-20.527,3.778)
Image (generated by PyMOL):