Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:A25:A19
Extra
PDB:
ATOM 1 O3' A A 24 30.423 -14.712 19.061 1.00 27.82 O
ATOM 2 P G A 25 29.015 -14.153 19.571 1.00 27.65 P
ATOM 3 OP1 G A 25 29.227 -13.744 20.979 1.00 29.68 O
ATOM 4 OP2 G A 25 27.962 -15.153 19.253 1.00 26.26 O
ATOM 5 O5' G A 25 28.784 -12.862 18.667 1.00 24.94 O
ATOM 6 C5' G A 25 28.674 -11.565 19.252 1.00 23.01 C
ATOM 7 C4' G A 25 27.415 -10.890 18.774 1.00 20.40 C
ATOM 8 O4' G A 25 27.605 -10.464 17.397 1.00 20.11 O
ATOM 9 C3' G A 25 26.180 -11.785 18.775 1.00 20.09 C
ATOM 10 O3' G A 25 24.989 -11.036 19.005 1.00 18.55 O
ATOM 11 C2' G A 25 26.158 -12.299 17.346 1.00 19.79 C
ATOM 12 O2' G A 25 24.876 -12.710 16.920 1.00 22.33 O
ATOM 13 C1' G A 25 26.614 -11.055 16.591 1.00 19.36 C
ATOM 14 N9 G A 25 27.182 -11.336 15.282 1.00 18.53 N
ATOM 15 C8 G A 25 26.924 -12.428 14.494 1.00 21.60 C
ATOM 16 N7 G A 25 27.520 -12.379 13.337 1.00 21.92 N
ATOM 17 C5 G A 25 28.229 -11.187 13.373 1.00 20.73 C
ATOM 18 C6 G A 25 29.051 -10.585 12.392 1.00 22.17 C
ATOM 19 O6 G A 25 29.310 -10.992 11.239 1.00 24.89 O
ATOM 20 N1 G A 25 29.588 -9.387 12.851 1.00 18.48 N
ATOM 21 C2 G A 25 29.351 -8.841 14.086 1.00 17.61 C
ATOM 22 N2 G A 25 29.974 -7.692 14.340 1.00 20.34 N
ATOM 23 N3 G A 25 28.570 -9.382 15.001 1.00 14.65 N
ATOM 24 C4 G A 25 28.047 -10.545 14.580 1.00 17.40 C
ATOM 25 P U A 26 24.825 -10.191 20.358 1.00 19.88 P
ATOM 26 OP1 U A 26 25.916 -10.469 21.335 1.00 22.12 O
ATOM 27 OP2 U A 26 23.414 -10.336 20.774 1.00 19.04 O
ATOM 28 O5' U A 26 25.057 -8.699 19.869 1.00 22.28 O
TER
ATOM 1 O3' C B 18 36.473 -4.460 12.137 1.00 23.31 O
ATOM 2 P A B 19 37.444 -5.515 12.869 1.00 27.20 P
ATOM 3 OP1 A B 19 38.551 -4.751 13.505 1.00 26.52 O
ATOM 4 OP2 A B 19 37.752 -6.609 11.904 1.00 24.34 O
ATOM 5 O5' A B 19 36.539 -6.101 14.042 1.00 27.72 O
ATOM 6 C5' A B 19 36.014 -5.234 15.044 1.00 27.20 C
ATOM 7 C4' A B 19 34.962 -5.946 15.853 1.00 26.89 C
ATOM 8 O4' A B 19 33.823 -6.262 15.015 1.00 26.14 O
ATOM 9 C3' A B 19 35.388 -7.286 16.428 1.00 27.11 C
ATOM 10 O3' A B 19 36.129 -7.094 17.624 1.00 27.99 O
ATOM 11 C2' A B 19 34.051 -7.975 16.646 1.00 26.51 C
ATOM 12 O2' A B 19 33.395 -7.504 17.809 1.00 28.01 O
ATOM 13 C1' A B 19 33.285 -7.513 15.402 1.00 24.43 C
ATOM 14 N9 A B 19 33.470 -8.416 14.278 1.00 21.10 N
ATOM 15 C8 A B 19 34.281 -8.224 13.197 1.00 21.86 C
ATOM 16 N7 A B 19 34.267 -9.217 12.345 1.00 22.73 N
ATOM 17 C5 A B 19 33.381 -10.121 12.905 1.00 20.74 C
ATOM 18 C6 A B 19 32.938 -11.387 12.495 1.00 20.31 C
ATOM 19 N6 A B 19 33.354 -11.993 11.386 1.00 18.03 N
ATOM 20 N1 A B 19 32.046 -12.023 13.279 1.00 21.70 N
ATOM 21 C2 A B 19 31.645 -11.422 14.405 1.00 23.23 C
ATOM 22 N3 A B 19 32.000 -10.239 14.902 1.00 22.95 N
ATOM 23 C4 A B 19 32.878 -9.634 14.093 1.00 21.18 C
ATOM 24 P C B 20 37.142 -8.231 18.125 1.00 26.21 P
ATOM 25 OP1 C B 20 38.162 -7.557 18.970 1.00 24.22 O
ATOM 26 OP2 C B 20 37.574 -9.050 16.964 1.00 22.95 O
ATOM 27 O5' C B 20 36.226 -9.142 19.054 1.00 25.09 O
TER
ATOM 2 P G A 25 29.015 -14.153 19.571 1.00 27.65 P
ATOM 3 OP1 G A 25 29.227 -13.744 20.979 1.00 29.68 O
ATOM 4 OP2 G A 25 27.962 -15.153 19.253 1.00 26.26 O
ATOM 5 O5' G A 25 28.784 -12.862 18.667 1.00 24.94 O
ATOM 6 C5' G A 25 28.674 -11.565 19.252 1.00 23.01 C
ATOM 7 C4' G A 25 27.415 -10.890 18.774 1.00 20.40 C
ATOM 8 O4' G A 25 27.605 -10.464 17.397 1.00 20.11 O
ATOM 9 C3' G A 25 26.180 -11.785 18.775 1.00 20.09 C
ATOM 10 O3' G A 25 24.989 -11.036 19.005 1.00 18.55 O
ATOM 11 C2' G A 25 26.158 -12.299 17.346 1.00 19.79 C
ATOM 12 O2' G A 25 24.876 -12.710 16.920 1.00 22.33 O
ATOM 13 C1' G A 25 26.614 -11.055 16.591 1.00 19.36 C
ATOM 14 N9 G A 25 27.182 -11.336 15.282 1.00 18.53 N
ATOM 15 C8 G A 25 26.924 -12.428 14.494 1.00 21.60 C
ATOM 16 N7 G A 25 27.520 -12.379 13.337 1.00 21.92 N
ATOM 17 C5 G A 25 28.229 -11.187 13.373 1.00 20.73 C
ATOM 18 C6 G A 25 29.051 -10.585 12.392 1.00 22.17 C
ATOM 19 O6 G A 25 29.310 -10.992 11.239 1.00 24.89 O
ATOM 20 N1 G A 25 29.588 -9.387 12.851 1.00 18.48 N
ATOM 21 C2 G A 25 29.351 -8.841 14.086 1.00 17.61 C
ATOM 22 N2 G A 25 29.974 -7.692 14.340 1.00 20.34 N
ATOM 23 N3 G A 25 28.570 -9.382 15.001 1.00 14.65 N
ATOM 24 C4 G A 25 28.047 -10.545 14.580 1.00 17.40 C
ATOM 25 P U A 26 24.825 -10.191 20.358 1.00 19.88 P
ATOM 26 OP1 U A 26 25.916 -10.469 21.335 1.00 22.12 O
ATOM 27 OP2 U A 26 23.414 -10.336 20.774 1.00 19.04 O
ATOM 28 O5' U A 26 25.057 -8.699 19.869 1.00 22.28 O
TER
ATOM 1 O3' C B 18 36.473 -4.460 12.137 1.00 23.31 O
ATOM 2 P A B 19 37.444 -5.515 12.869 1.00 27.20 P
ATOM 3 OP1 A B 19 38.551 -4.751 13.505 1.00 26.52 O
ATOM 4 OP2 A B 19 37.752 -6.609 11.904 1.00 24.34 O
ATOM 5 O5' A B 19 36.539 -6.101 14.042 1.00 27.72 O
ATOM 6 C5' A B 19 36.014 -5.234 15.044 1.00 27.20 C
ATOM 7 C4' A B 19 34.962 -5.946 15.853 1.00 26.89 C
ATOM 8 O4' A B 19 33.823 -6.262 15.015 1.00 26.14 O
ATOM 9 C3' A B 19 35.388 -7.286 16.428 1.00 27.11 C
ATOM 10 O3' A B 19 36.129 -7.094 17.624 1.00 27.99 O
ATOM 11 C2' A B 19 34.051 -7.975 16.646 1.00 26.51 C
ATOM 12 O2' A B 19 33.395 -7.504 17.809 1.00 28.01 O
ATOM 13 C1' A B 19 33.285 -7.513 15.402 1.00 24.43 C
ATOM 14 N9 A B 19 33.470 -8.416 14.278 1.00 21.10 N
ATOM 15 C8 A B 19 34.281 -8.224 13.197 1.00 21.86 C
ATOM 16 N7 A B 19 34.267 -9.217 12.345 1.00 22.73 N
ATOM 17 C5 A B 19 33.381 -10.121 12.905 1.00 20.74 C
ATOM 18 C6 A B 19 32.938 -11.387 12.495 1.00 20.31 C
ATOM 19 N6 A B 19 33.354 -11.993 11.386 1.00 18.03 N
ATOM 20 N1 A B 19 32.046 -12.023 13.279 1.00 21.70 N
ATOM 21 C2 A B 19 31.645 -11.422 14.405 1.00 23.23 C
ATOM 22 N3 A B 19 32.000 -10.239 14.902 1.00 22.95 N
ATOM 23 C4 A B 19 32.878 -9.634 14.093 1.00 21.18 C
ATOM 24 P C B 20 37.142 -8.231 18.125 1.00 26.21 P
ATOM 25 OP1 C B 20 38.162 -7.557 18.970 1.00 24.22 O
ATOM 26 OP2 C B 20 37.574 -9.050 16.964 1.00 22.95 O
ATOM 27 O5' C B 20 36.226 -9.142 19.054 1.00 25.09 O
TER
Atoms:
OP1: (29.227,-13.744,20.979)
OP2: (27.962,-15.153,19.253)
C3': (26.180,-11.785,18.775)
C1': (26.614,-11.055,16.591)
C5': (28.674,-11.565,19.252)
O6: (29.310,-10.992,11.239)
O4': (27.605,-10.464,17.397)
C8: (26.924,-12.428,14.494)
C2: (29.351,-8.841,14.086)
C6: (29.051,-10.585,12.392)
C5: (28.229,-11.187,13.373)
C4: (28.047,-10.545,14.580)
P: (29.015,-14.153,19.571)
C4': (27.415,-10.890,18.774)
C2': (26.158,-12.299,17.346)
O2': (24.876,-12.710,16.920)
N1: (29.588,-9.387,12.851)
N2: (29.974,-7.692,14.340)
N3: (28.570,-9.382,15.001)
N7: (27.520,-12.379,13.337)
N9: (27.182,-11.336,15.282)
O5': (28.784,-12.862,18.667)
O3': (24.989,-11.036,19.005)
OP2: (27.962,-15.153,19.253)
C3': (26.180,-11.785,18.775)
C1': (26.614,-11.055,16.591)
C5': (28.674,-11.565,19.252)
O6: (29.310,-10.992,11.239)
O4': (27.605,-10.464,17.397)
C8: (26.924,-12.428,14.494)
C2: (29.351,-8.841,14.086)
C6: (29.051,-10.585,12.392)
C5: (28.229,-11.187,13.373)
C4: (28.047,-10.545,14.580)
P: (29.015,-14.153,19.571)
C4': (27.415,-10.890,18.774)
C2': (26.158,-12.299,17.346)
O2': (24.876,-12.710,16.920)
N1: (29.588,-9.387,12.851)
N2: (29.974,-7.692,14.340)
N3: (28.570,-9.382,15.001)
N7: (27.520,-12.379,13.337)
N9: (27.182,-11.336,15.282)
O5': (28.784,-12.862,18.667)
O3': (24.989,-11.036,19.005)
OP1: (38.551,-4.751,13.505)
OP2: (37.752,-6.609,11.904)
C3': (35.388,-7.286,16.428)
C1': (33.285,-7.513,15.402)
C5': (36.014,-5.234,15.044)
O4': (33.823,-6.262,15.015)
C8: (34.281,-8.224,13.197)
O2': (33.395,-7.504,17.809)
C6: (32.938,-11.387,12.495)
C5: (33.381,-10.121,12.905)
C4: (32.878,-9.634,14.093)
P: (37.444,-5.515,12.869)
C4': (34.962,-5.946,15.853)
C2': (34.051,-7.975,16.646)
C2: (31.645,-11.422,14.405)
N1: (32.046,-12.023,13.279)
N3: (32.000,-10.239,14.902)
N6: (33.354,-11.993,11.386)
N7: (34.267,-9.217,12.345)
N9: (33.470,-8.416,14.278)
O5': (36.539,-6.101,14.042)
O3': (36.129,-7.094,17.624)
OP2: (37.752,-6.609,11.904)
C3': (35.388,-7.286,16.428)
C1': (33.285,-7.513,15.402)
C5': (36.014,-5.234,15.044)
O4': (33.823,-6.262,15.015)
C8: (34.281,-8.224,13.197)
O2': (33.395,-7.504,17.809)
C6: (32.938,-11.387,12.495)
C5: (33.381,-10.121,12.905)
C4: (32.878,-9.634,14.093)
P: (37.444,-5.515,12.869)
C4': (34.962,-5.946,15.853)
C2': (34.051,-7.975,16.646)
C2: (31.645,-11.422,14.405)
N1: (32.046,-12.023,13.279)
N3: (32.000,-10.239,14.902)
N6: (33.354,-11.993,11.386)
N7: (34.267,-9.217,12.345)
N9: (33.470,-8.416,14.278)
O5': (36.539,-6.101,14.042)
O3': (36.129,-7.094,17.624)
Image (generated by PyMOL):