Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD5:A6:B3
Extra
PDB:
ATOM 1 O3' C A 5 -9.405 10.885 20.104 1.00 33.79 O
ATOM 2 P A A 6 -8.168 9.881 19.930 1.00 36.56 P
ATOM 3 OP1 A A 6 -7.456 10.161 18.652 1.00 45.60 O
ATOM 4 OP2 A A 6 -8.493 8.470 20.299 1.00 42.13 O
ATOM 5 O5' A A 6 -7.201 10.352 21.155 1.00 36.93 O
ATOM 6 C5' A A 6 -6.731 9.296 22.033 1.00 33.89 C
ATOM 7 C4' A A 6 -6.111 9.934 23.275 1.00 29.25 C
ATOM 8 O4' A A 6 -7.198 10.173 24.216 1.00 25.43 O
ATOM 9 C3' A A 6 -5.169 8.960 24.008 1.00 25.15 C
ATOM 10 O3' A A 6 -3.822 9.176 23.549 1.00 25.47 O
ATOM 11 C2' A A 6 -5.318 9.452 25.449 1.00 22.40 C
ATOM 12 O2' A A 6 -4.577 10.651 25.651 1.00 25.89 O
ATOM 13 C1' A A 6 -6.814 9.715 25.517 1.00 22.49 C
ATOM 14 N9 A A 6 -7.661 8.607 25.974 1.00 21.47 N
ATOM 15 C8 A A 6 -8.697 7.996 25.278 1.00 23.50 C
ATOM 16 N7 A A 6 -9.287 7.035 25.972 1.00 22.54 N
ATOM 17 C5 A A 6 -8.631 7.008 27.195 1.00 20.22 C
ATOM 18 C6 A A 6 -8.806 6.200 28.345 1.00 21.46 C
ATOM 19 N6 A A 6 -9.742 5.223 28.496 1.00 20.23 N
ATOM 20 N1 A A 6 -7.989 6.433 29.399 1.00 21.05 N
ATOM 21 C2 A A 6 -7.054 7.410 29.291 1.00 22.83 C
ATOM 22 N3 A A 6 -6.820 8.231 28.243 1.00 21.90 N
ATOM 23 C4 A A 6 -7.647 7.972 27.203 1.00 21.21 C
ATOM 24 P G A 7 -2.913 7.860 23.274 1.00 26.01 P
ATOM 25 OP1 G A 7 -1.548 8.357 22.888 1.00 30.89 O
ATOM 26 OP2 G A 7 -3.616 6.952 22.342 1.00 26.36 O
ATOM 27 O5' G A 7 -2.800 7.122 24.692 1.00 26.63 O
TER
ATOM 1 O3' U B 2 -13.421 -3.274 29.618 1.00 25.00 O
ATOM 2 P C B 3 -14.626 -2.407 30.230 1.00 27.73 P
ATOM 3 OP1 C B 3 -14.934 -3.006 31.540 1.00 29.46 O
ATOM 4 OP2 C B 3 -15.689 -2.238 29.185 1.00 30.37 O
ATOM 5 O5' C B 3 -14.072 -0.907 30.405 1.00 26.35 O
ATOM 6 C5' C B 3 -13.036 -0.532 31.328 1.00 26.63 C
ATOM 7 C4' C B 3 -12.446 0.805 30.972 1.00 26.41 C
ATOM 8 O4' C B 3 -11.836 0.804 29.640 1.00 23.91 O
ATOM 9 C3' C B 3 -13.420 2.001 30.951 1.00 24.47 C
ATOM 10 O3' C B 3 -13.617 2.459 32.288 1.00 26.77 O
ATOM 11 C2' C B 3 -12.644 3.003 30.085 1.00 23.96 C
ATOM 12 O2' C B 3 -11.586 3.599 30.840 1.00 25.51 O
ATOM 13 C1' C B 3 -12.055 2.055 29.015 1.00 22.20 C
ATOM 14 N1 C B 3 -12.893 1.888 27.810 1.00 23.10 N
ATOM 15 C2 C B 3 -12.871 2.890 26.819 1.00 25.87 C
ATOM 16 O2 C B 3 -12.141 3.878 27.022 1.00 26.77 O
ATOM 17 N3 C B 3 -13.589 2.789 25.672 1.00 25.40 N
ATOM 18 C4 C B 3 -14.390 1.709 25.523 1.00 27.29 C
ATOM 19 N4 C B 3 -15.130 1.641 24.398 1.00 26.86 N
ATOM 20 C5 C B 3 -14.465 0.664 26.490 1.00 23.81 C
ATOM 21 C6 C B 3 -13.693 0.785 27.604 1.00 24.32 C
ATOM 22 P A B 4 -14.872 3.388 32.689 1.00 31.45 P
ATOM 23 OP1 A B 4 -14.959 3.471 34.179 1.00 34.77 O
ATOM 24 OP2 A B 4 -16.036 2.950 31.906 1.00 38.24 O
ATOM 25 O5' A B 4 -14.383 4.837 32.204 1.00 32.85 O
TER
ATOM 2 P A A 6 -8.168 9.881 19.930 1.00 36.56 P
ATOM 3 OP1 A A 6 -7.456 10.161 18.652 1.00 45.60 O
ATOM 4 OP2 A A 6 -8.493 8.470 20.299 1.00 42.13 O
ATOM 5 O5' A A 6 -7.201 10.352 21.155 1.00 36.93 O
ATOM 6 C5' A A 6 -6.731 9.296 22.033 1.00 33.89 C
ATOM 7 C4' A A 6 -6.111 9.934 23.275 1.00 29.25 C
ATOM 8 O4' A A 6 -7.198 10.173 24.216 1.00 25.43 O
ATOM 9 C3' A A 6 -5.169 8.960 24.008 1.00 25.15 C
ATOM 10 O3' A A 6 -3.822 9.176 23.549 1.00 25.47 O
ATOM 11 C2' A A 6 -5.318 9.452 25.449 1.00 22.40 C
ATOM 12 O2' A A 6 -4.577 10.651 25.651 1.00 25.89 O
ATOM 13 C1' A A 6 -6.814 9.715 25.517 1.00 22.49 C
ATOM 14 N9 A A 6 -7.661 8.607 25.974 1.00 21.47 N
ATOM 15 C8 A A 6 -8.697 7.996 25.278 1.00 23.50 C
ATOM 16 N7 A A 6 -9.287 7.035 25.972 1.00 22.54 N
ATOM 17 C5 A A 6 -8.631 7.008 27.195 1.00 20.22 C
ATOM 18 C6 A A 6 -8.806 6.200 28.345 1.00 21.46 C
ATOM 19 N6 A A 6 -9.742 5.223 28.496 1.00 20.23 N
ATOM 20 N1 A A 6 -7.989 6.433 29.399 1.00 21.05 N
ATOM 21 C2 A A 6 -7.054 7.410 29.291 1.00 22.83 C
ATOM 22 N3 A A 6 -6.820 8.231 28.243 1.00 21.90 N
ATOM 23 C4 A A 6 -7.647 7.972 27.203 1.00 21.21 C
ATOM 24 P G A 7 -2.913 7.860 23.274 1.00 26.01 P
ATOM 25 OP1 G A 7 -1.548 8.357 22.888 1.00 30.89 O
ATOM 26 OP2 G A 7 -3.616 6.952 22.342 1.00 26.36 O
ATOM 27 O5' G A 7 -2.800 7.122 24.692 1.00 26.63 O
TER
ATOM 1 O3' U B 2 -13.421 -3.274 29.618 1.00 25.00 O
ATOM 2 P C B 3 -14.626 -2.407 30.230 1.00 27.73 P
ATOM 3 OP1 C B 3 -14.934 -3.006 31.540 1.00 29.46 O
ATOM 4 OP2 C B 3 -15.689 -2.238 29.185 1.00 30.37 O
ATOM 5 O5' C B 3 -14.072 -0.907 30.405 1.00 26.35 O
ATOM 6 C5' C B 3 -13.036 -0.532 31.328 1.00 26.63 C
ATOM 7 C4' C B 3 -12.446 0.805 30.972 1.00 26.41 C
ATOM 8 O4' C B 3 -11.836 0.804 29.640 1.00 23.91 O
ATOM 9 C3' C B 3 -13.420 2.001 30.951 1.00 24.47 C
ATOM 10 O3' C B 3 -13.617 2.459 32.288 1.00 26.77 O
ATOM 11 C2' C B 3 -12.644 3.003 30.085 1.00 23.96 C
ATOM 12 O2' C B 3 -11.586 3.599 30.840 1.00 25.51 O
ATOM 13 C1' C B 3 -12.055 2.055 29.015 1.00 22.20 C
ATOM 14 N1 C B 3 -12.893 1.888 27.810 1.00 23.10 N
ATOM 15 C2 C B 3 -12.871 2.890 26.819 1.00 25.87 C
ATOM 16 O2 C B 3 -12.141 3.878 27.022 1.00 26.77 O
ATOM 17 N3 C B 3 -13.589 2.789 25.672 1.00 25.40 N
ATOM 18 C4 C B 3 -14.390 1.709 25.523 1.00 27.29 C
ATOM 19 N4 C B 3 -15.130 1.641 24.398 1.00 26.86 N
ATOM 20 C5 C B 3 -14.465 0.664 26.490 1.00 23.81 C
ATOM 21 C6 C B 3 -13.693 0.785 27.604 1.00 24.32 C
ATOM 22 P A B 4 -14.872 3.388 32.689 1.00 31.45 P
ATOM 23 OP1 A B 4 -14.959 3.471 34.179 1.00 34.77 O
ATOM 24 OP2 A B 4 -16.036 2.950 31.906 1.00 38.24 O
ATOM 25 O5' A B 4 -14.383 4.837 32.204 1.00 32.85 O
TER
Atoms:
OP1: (-7.456,10.161,18.652)
OP2: (-8.493,8.470,20.299)
C3': (-5.169,8.960,24.008)
C1': (-6.814,9.715,25.517)
C5': (-6.731,9.296,22.033)
O4': (-7.198,10.173,24.216)
C8: (-8.697,7.996,25.278)
O2': (-4.577,10.651,25.651)
C6: (-8.806,6.200,28.345)
C5: (-8.631,7.008,27.195)
C4: (-7.647,7.972,27.203)
P: (-8.168,9.881,19.930)
C4': (-6.111,9.934,23.275)
C2': (-5.318,9.452,25.449)
C2: (-7.054,7.410,29.291)
N1: (-7.989,6.433,29.399)
N3: (-6.820,8.231,28.243)
N6: (-9.742,5.223,28.496)
N7: (-9.287,7.035,25.972)
N9: (-7.661,8.607,25.974)
O5': (-7.201,10.352,21.155)
O3': (-3.822,9.176,23.549)
OP2: (-8.493,8.470,20.299)
C3': (-5.169,8.960,24.008)
C1': (-6.814,9.715,25.517)
C5': (-6.731,9.296,22.033)
O4': (-7.198,10.173,24.216)
C8: (-8.697,7.996,25.278)
O2': (-4.577,10.651,25.651)
C6: (-8.806,6.200,28.345)
C5: (-8.631,7.008,27.195)
C4: (-7.647,7.972,27.203)
P: (-8.168,9.881,19.930)
C4': (-6.111,9.934,23.275)
C2': (-5.318,9.452,25.449)
C2: (-7.054,7.410,29.291)
N1: (-7.989,6.433,29.399)
N3: (-6.820,8.231,28.243)
N6: (-9.742,5.223,28.496)
N7: (-9.287,7.035,25.972)
N9: (-7.661,8.607,25.974)
O5': (-7.201,10.352,21.155)
O3': (-3.822,9.176,23.549)
C2: (-12.871,2.890,26.819)
OP1: (-14.934,-3.006,31.540)
OP2: (-15.689,-2.238,29.185)
C4: (-14.390,1.709,25.523)
O5': (-14.072,-0.907,30.405)
C3': (-13.420,2.001,30.951)
C1': (-12.055,2.055,29.015)
O4': (-11.836,0.804,29.640)
C5': (-13.036,-0.532,31.328)
P: (-14.626,-2.407,30.230)
O2: (-12.141,3.878,27.022)
C4': (-12.446,0.805,30.972)
C2': (-12.644,3.003,30.085)
O2': (-11.586,3.599,30.840)
N1: (-12.893,1.888,27.810)
N3: (-13.589,2.789,25.672)
N4: (-15.130,1.641,24.398)
C6: (-13.693,0.785,27.604)
C5: (-14.465,0.664,26.490)
O3': (-13.617,2.459,32.288)
OP1: (-14.934,-3.006,31.540)
OP2: (-15.689,-2.238,29.185)
C4: (-14.390,1.709,25.523)
O5': (-14.072,-0.907,30.405)
C3': (-13.420,2.001,30.951)
C1': (-12.055,2.055,29.015)
O4': (-11.836,0.804,29.640)
C5': (-13.036,-0.532,31.328)
P: (-14.626,-2.407,30.230)
O2: (-12.141,3.878,27.022)
C4': (-12.446,0.805,30.972)
C2': (-12.644,3.003,30.085)
O2': (-11.586,3.599,30.840)
N1: (-12.893,1.888,27.810)
N3: (-13.589,2.789,25.672)
N4: (-15.130,1.641,24.398)
C6: (-13.693,0.785,27.604)
C5: (-14.465,0.664,26.490)
O3': (-13.617,2.459,32.288)
Image (generated by PyMOL):