Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:G25:G19
Extra
PDB:
ATOM 1 O3' A A 24 0.394 -44.783 -8.850 1.00 26.38 O
ATOM 2 P G A 25 1.147 -44.077 -7.630 1.00 23.32 P
ATOM 3 OP1 G A 25 2.556 -43.841 -8.057 1.00 29.12 O
ATOM 4 OP2 G A 25 0.875 -44.956 -6.464 1.00 20.09 O
ATOM 5 O5' G A 25 0.375 -42.693 -7.447 1.00 18.61 O
ATOM 6 C5' G A 25 1.074 -41.448 -7.436 1.00 16.76 C
ATOM 7 C4' G A 25 1.101 -40.869 -6.035 1.00 14.16 C
ATOM 8 O4' G A 25 -0.245 -40.467 -5.645 1.00 12.64 O
ATOM 9 C3' G A 25 1.583 -41.831 -4.952 1.00 12.67 C
ATOM 10 O3' G A 25 2.245 -41.151 -3.891 1.00 12.12 O
ATOM 11 C2' G A 25 0.280 -42.361 -4.391 1.00 11.01 C
ATOM 12 O2' G A 25 0.458 -42.793 -3.068 1.00 14.88 O
ATOM 13 C1' G A 25 -0.582 -41.108 -4.438 1.00 10.28 C
ATOM 14 N9 G A 25 -2.013 -41.366 -4.428 1.00 7.70 N
ATOM 15 C8 G A 25 -2.648 -42.463 -3.900 1.00 7.64 C
ATOM 16 N7 G A 25 -3.949 -42.390 -3.982 1.00 9.09 N
ATOM 17 C5 G A 25 -4.187 -41.175 -4.617 1.00 7.17 C
ATOM 18 C6 G A 25 -5.407 -40.551 -4.967 1.00 5.70 C
ATOM 19 O6 G A 25 -6.558 -40.954 -4.767 1.00 12.38 O
ATOM 20 N1 G A 25 -5.199 -39.336 -5.604 1.00 3.32 N
ATOM 21 C2 G A 25 -3.972 -38.789 -5.870 1.00 7.15 C
ATOM 22 N2 G A 25 -3.985 -37.615 -6.513 1.00 8.93 N
ATOM 23 N3 G A 25 -2.816 -39.353 -5.538 1.00 5.38 N
ATOM 24 C4 G A 25 -3.001 -40.539 -4.917 1.00 7.77 C
ATOM 25 P U A 26 3.576 -40.300 -4.193 1.00 16.33 P
ATOM 26 OP1 U A 26 4.187 -40.711 -5.491 1.00 16.08 O
ATOM 27 OP2 U A 26 4.404 -40.323 -2.959 1.00 14.24 O
ATOM 28 O5' U A 26 2.989 -38.836 -4.394 1.00 15.97 O
TER
ATOM 1 O3' C B 18 -8.569 -34.587 -11.733 1.00 20.97 O
ATOM 2 P A B 19 -8.267 -35.660 -12.896 1.00 24.68 P
ATOM 3 OP1 A B 19 -8.066 -34.908 -14.160 1.00 26.14 O
ATOM 4 OP2 A B 19 -9.305 -36.732 -12.833 1.00 23.71 O
ATOM 5 O5' A B 19 -6.860 -36.280 -12.492 1.00 21.00 O
ATOM 6 C5' A B 19 -5.694 -35.480 -12.511 1.00 20.81 C
ATOM 7 C4' A B 19 -4.574 -36.183 -11.788 1.00 23.11 C
ATOM 8 O4' A B 19 -4.957 -36.434 -10.409 1.00 25.38 O
ATOM 9 C3' A B 19 -4.221 -37.562 -12.312 1.00 23.30 C
ATOM 10 O3' A B 19 -3.407 -37.493 -13.461 1.00 24.69 O
ATOM 11 C2' A B 19 -3.514 -38.178 -11.120 1.00 23.08 C
ATOM 12 O2' A B 19 -2.202 -37.671 -10.968 1.00 23.55 O
ATOM 13 C1' A B 19 -4.401 -37.670 -9.982 1.00 22.27 C
ATOM 14 N9 A B 19 -5.505 -38.592 -9.737 1.00 20.83 N
ATOM 15 C8 A B 19 -6.834 -38.456 -10.058 1.00 18.96 C
ATOM 16 N7 A B 19 -7.565 -39.483 -9.706 1.00 19.56 N
ATOM 17 C5 A B 19 -6.657 -40.347 -9.104 1.00 19.11 C
ATOM 18 C6 A B 19 -6.798 -41.617 -8.504 1.00 19.67 C
ATOM 19 N6 A B 19 -7.961 -42.268 -8.390 1.00 18.52 N
ATOM 20 N1 A B 19 -5.687 -42.203 -8.015 1.00 18.24 N
ATOM 21 C2 A B 19 -4.522 -41.552 -8.119 1.00 19.62 C
ATOM 22 N3 A B 19 -4.265 -40.362 -8.650 1.00 18.20 N
ATOM 23 C4 A B 19 -5.387 -39.809 -9.126 1.00 18.24 C
ATOM 24 P C B 20 -3.732 -38.447 -14.697 1.00 25.17 P
ATOM 25 OP1 C B 20 -2.970 -37.893 -15.840 1.00 21.82 O
ATOM 26 OP2 C B 20 -5.210 -38.606 -14.790 1.00 24.47 O
ATOM 27 O5' C B 20 -3.144 -39.852 -14.242 1.00 20.71 O
TER
ATOM 2 P G A 25 1.147 -44.077 -7.630 1.00 23.32 P
ATOM 3 OP1 G A 25 2.556 -43.841 -8.057 1.00 29.12 O
ATOM 4 OP2 G A 25 0.875 -44.956 -6.464 1.00 20.09 O
ATOM 5 O5' G A 25 0.375 -42.693 -7.447 1.00 18.61 O
ATOM 6 C5' G A 25 1.074 -41.448 -7.436 1.00 16.76 C
ATOM 7 C4' G A 25 1.101 -40.869 -6.035 1.00 14.16 C
ATOM 8 O4' G A 25 -0.245 -40.467 -5.645 1.00 12.64 O
ATOM 9 C3' G A 25 1.583 -41.831 -4.952 1.00 12.67 C
ATOM 10 O3' G A 25 2.245 -41.151 -3.891 1.00 12.12 O
ATOM 11 C2' G A 25 0.280 -42.361 -4.391 1.00 11.01 C
ATOM 12 O2' G A 25 0.458 -42.793 -3.068 1.00 14.88 O
ATOM 13 C1' G A 25 -0.582 -41.108 -4.438 1.00 10.28 C
ATOM 14 N9 G A 25 -2.013 -41.366 -4.428 1.00 7.70 N
ATOM 15 C8 G A 25 -2.648 -42.463 -3.900 1.00 7.64 C
ATOM 16 N7 G A 25 -3.949 -42.390 -3.982 1.00 9.09 N
ATOM 17 C5 G A 25 -4.187 -41.175 -4.617 1.00 7.17 C
ATOM 18 C6 G A 25 -5.407 -40.551 -4.967 1.00 5.70 C
ATOM 19 O6 G A 25 -6.558 -40.954 -4.767 1.00 12.38 O
ATOM 20 N1 G A 25 -5.199 -39.336 -5.604 1.00 3.32 N
ATOM 21 C2 G A 25 -3.972 -38.789 -5.870 1.00 7.15 C
ATOM 22 N2 G A 25 -3.985 -37.615 -6.513 1.00 8.93 N
ATOM 23 N3 G A 25 -2.816 -39.353 -5.538 1.00 5.38 N
ATOM 24 C4 G A 25 -3.001 -40.539 -4.917 1.00 7.77 C
ATOM 25 P U A 26 3.576 -40.300 -4.193 1.00 16.33 P
ATOM 26 OP1 U A 26 4.187 -40.711 -5.491 1.00 16.08 O
ATOM 27 OP2 U A 26 4.404 -40.323 -2.959 1.00 14.24 O
ATOM 28 O5' U A 26 2.989 -38.836 -4.394 1.00 15.97 O
TER
ATOM 1 O3' C B 18 -8.569 -34.587 -11.733 1.00 20.97 O
ATOM 2 P A B 19 -8.267 -35.660 -12.896 1.00 24.68 P
ATOM 3 OP1 A B 19 -8.066 -34.908 -14.160 1.00 26.14 O
ATOM 4 OP2 A B 19 -9.305 -36.732 -12.833 1.00 23.71 O
ATOM 5 O5' A B 19 -6.860 -36.280 -12.492 1.00 21.00 O
ATOM 6 C5' A B 19 -5.694 -35.480 -12.511 1.00 20.81 C
ATOM 7 C4' A B 19 -4.574 -36.183 -11.788 1.00 23.11 C
ATOM 8 O4' A B 19 -4.957 -36.434 -10.409 1.00 25.38 O
ATOM 9 C3' A B 19 -4.221 -37.562 -12.312 1.00 23.30 C
ATOM 10 O3' A B 19 -3.407 -37.493 -13.461 1.00 24.69 O
ATOM 11 C2' A B 19 -3.514 -38.178 -11.120 1.00 23.08 C
ATOM 12 O2' A B 19 -2.202 -37.671 -10.968 1.00 23.55 O
ATOM 13 C1' A B 19 -4.401 -37.670 -9.982 1.00 22.27 C
ATOM 14 N9 A B 19 -5.505 -38.592 -9.737 1.00 20.83 N
ATOM 15 C8 A B 19 -6.834 -38.456 -10.058 1.00 18.96 C
ATOM 16 N7 A B 19 -7.565 -39.483 -9.706 1.00 19.56 N
ATOM 17 C5 A B 19 -6.657 -40.347 -9.104 1.00 19.11 C
ATOM 18 C6 A B 19 -6.798 -41.617 -8.504 1.00 19.67 C
ATOM 19 N6 A B 19 -7.961 -42.268 -8.390 1.00 18.52 N
ATOM 20 N1 A B 19 -5.687 -42.203 -8.015 1.00 18.24 N
ATOM 21 C2 A B 19 -4.522 -41.552 -8.119 1.00 19.62 C
ATOM 22 N3 A B 19 -4.265 -40.362 -8.650 1.00 18.20 N
ATOM 23 C4 A B 19 -5.387 -39.809 -9.126 1.00 18.24 C
ATOM 24 P C B 20 -3.732 -38.447 -14.697 1.00 25.17 P
ATOM 25 OP1 C B 20 -2.970 -37.893 -15.840 1.00 21.82 O
ATOM 26 OP2 C B 20 -5.210 -38.606 -14.790 1.00 24.47 O
ATOM 27 O5' C B 20 -3.144 -39.852 -14.242 1.00 20.71 O
TER
Atoms:
OP1: (2.556,-43.841,-8.057)
OP2: (0.875,-44.956,-6.464)
C3': (1.583,-41.831,-4.952)
C1': (-0.582,-41.108,-4.438)
C5': (1.074,-41.448,-7.436)
O6: (-6.558,-40.954,-4.767)
O4': (-0.245,-40.467,-5.645)
C8: (-2.648,-42.463,-3.900)
C2: (-3.972,-38.789,-5.870)
C6: (-5.407,-40.551,-4.967)
C5: (-4.187,-41.175,-4.617)
C4: (-3.001,-40.539,-4.917)
P: (1.147,-44.077,-7.630)
C4': (1.101,-40.869,-6.035)
C2': (0.280,-42.361,-4.391)
O2': (0.458,-42.793,-3.068)
N1: (-5.199,-39.336,-5.604)
N2: (-3.985,-37.615,-6.513)
N3: (-2.816,-39.353,-5.538)
N7: (-3.949,-42.390,-3.982)
N9: (-2.013,-41.366,-4.428)
O5': (0.375,-42.693,-7.447)
O3': (2.245,-41.151,-3.891)
OP2: (0.875,-44.956,-6.464)
C3': (1.583,-41.831,-4.952)
C1': (-0.582,-41.108,-4.438)
C5': (1.074,-41.448,-7.436)
O6: (-6.558,-40.954,-4.767)
O4': (-0.245,-40.467,-5.645)
C8: (-2.648,-42.463,-3.900)
C2: (-3.972,-38.789,-5.870)
C6: (-5.407,-40.551,-4.967)
C5: (-4.187,-41.175,-4.617)
C4: (-3.001,-40.539,-4.917)
P: (1.147,-44.077,-7.630)
C4': (1.101,-40.869,-6.035)
C2': (0.280,-42.361,-4.391)
O2': (0.458,-42.793,-3.068)
N1: (-5.199,-39.336,-5.604)
N2: (-3.985,-37.615,-6.513)
N3: (-2.816,-39.353,-5.538)
N7: (-3.949,-42.390,-3.982)
N9: (-2.013,-41.366,-4.428)
O5': (0.375,-42.693,-7.447)
O3': (2.245,-41.151,-3.891)
OP1: (-8.066,-34.908,-14.160)
OP2: (-9.305,-36.732,-12.833)
C3': (-4.221,-37.562,-12.312)
C1': (-4.401,-37.670,-9.982)
C5': (-5.694,-35.480,-12.511)
O4': (-4.957,-36.434,-10.409)
C8: (-6.834,-38.456,-10.058)
O2': (-2.202,-37.671,-10.968)
C6: (-6.798,-41.617,-8.504)
C5: (-6.657,-40.347,-9.104)
C4: (-5.387,-39.809,-9.126)
P: (-8.267,-35.660,-12.896)
C4': (-4.574,-36.183,-11.788)
C2': (-3.514,-38.178,-11.120)
C2: (-4.522,-41.552,-8.119)
N1: (-5.687,-42.203,-8.015)
N3: (-4.265,-40.362,-8.650)
N6: (-7.961,-42.268,-8.390)
N7: (-7.565,-39.483,-9.706)
N9: (-5.505,-38.592,-9.737)
O5': (-6.860,-36.280,-12.492)
O3': (-3.407,-37.493,-13.461)
OP2: (-9.305,-36.732,-12.833)
C3': (-4.221,-37.562,-12.312)
C1': (-4.401,-37.670,-9.982)
C5': (-5.694,-35.480,-12.511)
O4': (-4.957,-36.434,-10.409)
C8: (-6.834,-38.456,-10.058)
O2': (-2.202,-37.671,-10.968)
C6: (-6.798,-41.617,-8.504)
C5: (-6.657,-40.347,-9.104)
C4: (-5.387,-39.809,-9.126)
P: (-8.267,-35.660,-12.896)
C4': (-4.574,-36.183,-11.788)
C2': (-3.514,-38.178,-11.120)
C2: (-4.522,-41.552,-8.119)
N1: (-5.687,-42.203,-8.015)
N3: (-4.265,-40.362,-8.650)
N6: (-7.961,-42.268,-8.390)
N7: (-7.565,-39.483,-9.706)
N9: (-5.505,-38.592,-9.737)
O5': (-6.860,-36.280,-12.492)
O3': (-3.407,-37.493,-13.461)
Image (generated by PyMOL):