Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:056:057
Extra
PDB:
ATOM 1 O3' C A 55 56.240 155.258 29.482 1.00 58.25 O
ATOM 2 P G A 56 57.785 154.978 29.172 1.00 58.18 P
ATOM 3 OP1 G A 56 57.967 154.853 27.704 1.00 59.30 O
ATOM 4 OP2 G A 56 58.178 153.861 30.053 1.00 58.54 O
ATOM 5 O5' G A 56 58.539 156.293 29.667 1.00 58.04 O
ATOM 6 C5' G A 56 58.130 157.604 29.224 1.00 57.42 C
ATOM 7 C4' G A 56 59.024 158.666 29.827 1.00 56.38 C
ATOM 8 O4' G A 56 58.999 158.541 31.274 1.00 56.80 O
ATOM 9 C3' G A 56 60.496 158.605 29.437 1.00 56.19 C
ATOM 10 O3' G A 56 61.027 159.928 29.534 1.00 57.84 O
ATOM 11 C2' G A 56 61.089 157.752 30.555 1.00 55.84 C
ATOM 12 O2' G A 56 62.471 157.972 30.750 1.00 56.42 O
ATOM 13 C1' G A 56 60.303 158.271 31.755 1.00 56.22 C
ATOM 14 N9 G A 56 60.199 157.364 32.898 1.00 56.03 N
ATOM 15 C8 G A 56 59.431 156.229 32.989 1.00 56.32 C
ATOM 16 N7 G A 56 59.507 155.651 34.156 1.00 56.87 N
ATOM 17 C5 G A 56 60.386 156.445 34.878 1.00 56.41 C
ATOM 18 C6 G A 56 60.849 156.322 36.212 1.00 56.20 C
ATOM 19 O6 G A 56 60.569 155.463 37.048 1.00 55.58 O
ATOM 20 N1 G A 56 61.731 157.342 36.540 1.00 56.56 N
ATOM 21 C2 G A 56 62.122 158.347 35.700 1.00 55.46 C
ATOM 22 N2 G A 56 62.993 159.222 36.204 1.00 55.40 N
ATOM 23 N3 G A 56 61.696 158.479 34.459 1.00 56.13 N
ATOM 24 C4 G A 56 60.834 157.499 34.114 1.00 56.14 C
ATOM 25 P A A 57 61.017 160.910 28.259 1.00 56.72 P
ATOM 26 OP1 A A 57 60.124 160.342 27.216 1.00 57.31 O
ATOM 27 OP2 A A 57 62.423 161.245 27.926 1.00 54.58 O
ATOM 28 O5' A A 57 60.313 162.229 28.803 1.00 57.09 O
TER
ATOM 1 O3' G B 56 61.027 159.928 29.534 1.00 57.84 O
ATOM 2 P A B 57 61.017 160.910 28.259 1.00 56.72 P
ATOM 3 OP1 A B 57 60.124 160.342 27.216 1.00 57.31 O
ATOM 4 OP2 A B 57 62.423 161.245 27.926 1.00 54.58 O
ATOM 5 O5' A B 57 60.313 162.229 28.803 1.00 57.09 O
ATOM 6 C5' A B 57 60.729 162.826 30.037 1.00 59.95 C
ATOM 7 C4' A B 57 61.200 164.242 29.802 1.00 61.72 C
ATOM 8 O4' A B 57 61.665 164.783 31.068 1.00 63.11 O
ATOM 9 C3' A B 57 62.378 164.374 28.840 1.00 63.03 C
ATOM 10 O3' A B 57 62.342 165.658 28.214 1.00 61.28 O
ATOM 11 C2' A B 57 63.573 164.288 29.781 1.00 64.22 C
ATOM 12 O2' A B 57 64.750 164.864 29.250 1.00 66.02 O
ATOM 13 C1' A B 57 63.051 165.072 30.985 1.00 64.57 C
ATOM 14 N9 A B 57 63.679 164.706 32.257 1.00 65.42 N
ATOM 15 C8 A B 57 64.440 165.505 33.078 1.00 66.23 C
ATOM 16 N7 A B 57 64.886 164.893 34.148 1.00 66.57 N
ATOM 17 C5 A B 57 64.384 163.604 34.025 1.00 66.20 C
ATOM 18 C6 A B 57 64.510 162.464 34.829 1.00 65.95 C
ATOM 19 N6 A B 57 65.213 162.432 35.962 1.00 65.55 N
ATOM 20 N1 A B 57 63.885 161.340 34.422 1.00 66.51 N
ATOM 21 C2 A B 57 63.185 161.371 33.281 1.00 65.98 C
ATOM 22 N3 A B 57 62.995 162.376 32.440 1.00 65.02 N
ATOM 23 C4 A B 57 63.631 163.477 32.871 1.00 65.76 C
ATOM 24 P U B 58 62.267 165.766 26.615 1.00 60.15 P
ATOM 25 OP1 U B 58 63.197 164.760 26.030 1.00 57.93 O
ATOM 26 OP2 U B 58 62.443 167.203 26.290 1.00 60.89 O
ATOM 27 O5' U B 58 60.757 165.370 26.278 1.00 57.37 O
TER
ATOM 2 P G A 56 57.785 154.978 29.172 1.00 58.18 P
ATOM 3 OP1 G A 56 57.967 154.853 27.704 1.00 59.30 O
ATOM 4 OP2 G A 56 58.178 153.861 30.053 1.00 58.54 O
ATOM 5 O5' G A 56 58.539 156.293 29.667 1.00 58.04 O
ATOM 6 C5' G A 56 58.130 157.604 29.224 1.00 57.42 C
ATOM 7 C4' G A 56 59.024 158.666 29.827 1.00 56.38 C
ATOM 8 O4' G A 56 58.999 158.541 31.274 1.00 56.80 O
ATOM 9 C3' G A 56 60.496 158.605 29.437 1.00 56.19 C
ATOM 10 O3' G A 56 61.027 159.928 29.534 1.00 57.84 O
ATOM 11 C2' G A 56 61.089 157.752 30.555 1.00 55.84 C
ATOM 12 O2' G A 56 62.471 157.972 30.750 1.00 56.42 O
ATOM 13 C1' G A 56 60.303 158.271 31.755 1.00 56.22 C
ATOM 14 N9 G A 56 60.199 157.364 32.898 1.00 56.03 N
ATOM 15 C8 G A 56 59.431 156.229 32.989 1.00 56.32 C
ATOM 16 N7 G A 56 59.507 155.651 34.156 1.00 56.87 N
ATOM 17 C5 G A 56 60.386 156.445 34.878 1.00 56.41 C
ATOM 18 C6 G A 56 60.849 156.322 36.212 1.00 56.20 C
ATOM 19 O6 G A 56 60.569 155.463 37.048 1.00 55.58 O
ATOM 20 N1 G A 56 61.731 157.342 36.540 1.00 56.56 N
ATOM 21 C2 G A 56 62.122 158.347 35.700 1.00 55.46 C
ATOM 22 N2 G A 56 62.993 159.222 36.204 1.00 55.40 N
ATOM 23 N3 G A 56 61.696 158.479 34.459 1.00 56.13 N
ATOM 24 C4 G A 56 60.834 157.499 34.114 1.00 56.14 C
ATOM 25 P A A 57 61.017 160.910 28.259 1.00 56.72 P
ATOM 26 OP1 A A 57 60.124 160.342 27.216 1.00 57.31 O
ATOM 27 OP2 A A 57 62.423 161.245 27.926 1.00 54.58 O
ATOM 28 O5' A A 57 60.313 162.229 28.803 1.00 57.09 O
TER
ATOM 1 O3' G B 56 61.027 159.928 29.534 1.00 57.84 O
ATOM 2 P A B 57 61.017 160.910 28.259 1.00 56.72 P
ATOM 3 OP1 A B 57 60.124 160.342 27.216 1.00 57.31 O
ATOM 4 OP2 A B 57 62.423 161.245 27.926 1.00 54.58 O
ATOM 5 O5' A B 57 60.313 162.229 28.803 1.00 57.09 O
ATOM 6 C5' A B 57 60.729 162.826 30.037 1.00 59.95 C
ATOM 7 C4' A B 57 61.200 164.242 29.802 1.00 61.72 C
ATOM 8 O4' A B 57 61.665 164.783 31.068 1.00 63.11 O
ATOM 9 C3' A B 57 62.378 164.374 28.840 1.00 63.03 C
ATOM 10 O3' A B 57 62.342 165.658 28.214 1.00 61.28 O
ATOM 11 C2' A B 57 63.573 164.288 29.781 1.00 64.22 C
ATOM 12 O2' A B 57 64.750 164.864 29.250 1.00 66.02 O
ATOM 13 C1' A B 57 63.051 165.072 30.985 1.00 64.57 C
ATOM 14 N9 A B 57 63.679 164.706 32.257 1.00 65.42 N
ATOM 15 C8 A B 57 64.440 165.505 33.078 1.00 66.23 C
ATOM 16 N7 A B 57 64.886 164.893 34.148 1.00 66.57 N
ATOM 17 C5 A B 57 64.384 163.604 34.025 1.00 66.20 C
ATOM 18 C6 A B 57 64.510 162.464 34.829 1.00 65.95 C
ATOM 19 N6 A B 57 65.213 162.432 35.962 1.00 65.55 N
ATOM 20 N1 A B 57 63.885 161.340 34.422 1.00 66.51 N
ATOM 21 C2 A B 57 63.185 161.371 33.281 1.00 65.98 C
ATOM 22 N3 A B 57 62.995 162.376 32.440 1.00 65.02 N
ATOM 23 C4 A B 57 63.631 163.477 32.871 1.00 65.76 C
ATOM 24 P U B 58 62.267 165.766 26.615 1.00 60.15 P
ATOM 25 OP1 U B 58 63.197 164.760 26.030 1.00 57.93 O
ATOM 26 OP2 U B 58 62.443 167.203 26.290 1.00 60.89 O
ATOM 27 O5' U B 58 60.757 165.370 26.278 1.00 57.37 O
TER
Atoms:
OP1: (57.967,154.853,27.704)
OP2: (58.178,153.861,30.053)
C3': (60.496,158.605,29.437)
C1': (60.303,158.271,31.755)
C5': (58.130,157.604,29.224)
O6: (60.569,155.463,37.048)
O4': (58.999,158.541,31.274)
C8: (59.431,156.229,32.989)
C2: (62.122,158.347,35.700)
C6: (60.849,156.322,36.212)
C5: (60.386,156.445,34.878)
C4: (60.834,157.499,34.114)
P: (57.785,154.978,29.172)
C4': (59.024,158.666,29.827)
C2': (61.089,157.752,30.555)
O2': (62.471,157.972,30.750)
N1: (61.731,157.342,36.540)
N2: (62.993,159.222,36.204)
N3: (61.696,158.479,34.459)
N7: (59.507,155.651,34.156)
N9: (60.199,157.364,32.898)
O5': (58.539,156.293,29.667)
O3': (61.027,159.928,29.534)
OP2: (58.178,153.861,30.053)
C3': (60.496,158.605,29.437)
C1': (60.303,158.271,31.755)
C5': (58.130,157.604,29.224)
O6: (60.569,155.463,37.048)
O4': (58.999,158.541,31.274)
C8: (59.431,156.229,32.989)
C2: (62.122,158.347,35.700)
C6: (60.849,156.322,36.212)
C5: (60.386,156.445,34.878)
C4: (60.834,157.499,34.114)
P: (57.785,154.978,29.172)
C4': (59.024,158.666,29.827)
C2': (61.089,157.752,30.555)
O2': (62.471,157.972,30.750)
N1: (61.731,157.342,36.540)
N2: (62.993,159.222,36.204)
N3: (61.696,158.479,34.459)
N7: (59.507,155.651,34.156)
N9: (60.199,157.364,32.898)
O5': (58.539,156.293,29.667)
O3': (61.027,159.928,29.534)
OP1: (60.124,160.342,27.216)
OP2: (62.423,161.245,27.926)
C3': (62.378,164.374,28.840)
C1': (63.051,165.072,30.985)
C5': (60.729,162.826,30.037)
O4': (61.665,164.783,31.068)
C8: (64.440,165.505,33.078)
O2': (64.750,164.864,29.250)
C6: (64.510,162.464,34.829)
C5: (64.384,163.604,34.025)
C4: (63.631,163.477,32.871)
P: (61.017,160.910,28.259)
C4': (61.200,164.242,29.802)
C2': (63.573,164.288,29.781)
C2: (63.185,161.371,33.281)
N1: (63.885,161.340,34.422)
N3: (62.995,162.376,32.440)
N6: (65.213,162.432,35.962)
N7: (64.886,164.893,34.148)
N9: (63.679,164.706,32.257)
O5': (60.313,162.229,28.803)
O3': (62.342,165.658,28.214)
OP2: (62.423,161.245,27.926)
C3': (62.378,164.374,28.840)
C1': (63.051,165.072,30.985)
C5': (60.729,162.826,30.037)
O4': (61.665,164.783,31.068)
C8: (64.440,165.505,33.078)
O2': (64.750,164.864,29.250)
C6: (64.510,162.464,34.829)
C5: (64.384,163.604,34.025)
C4: (63.631,163.477,32.871)
P: (61.017,160.910,28.259)
C4': (61.200,164.242,29.802)
C2': (63.573,164.288,29.781)
C2: (63.185,161.371,33.281)
N1: (63.885,161.340,34.422)
N3: (62.995,162.376,32.440)
N6: (65.213,162.432,35.962)
N7: (64.886,164.893,34.148)
N9: (63.679,164.706,32.257)
O5': (60.313,162.229,28.803)
O3': (62.342,165.658,28.214)
Image (generated by PyMOL):