Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:056:057
Extra
PDB:
ATOM 1 O3' C A 55 56.008 155.106 29.251 1.00 55.17 O
ATOM 2 P G A 56 57.558 154.855 28.903 1.00 56.99 P
ATOM 3 OP1 G A 56 57.701 154.758 27.426 1.00 57.02 O
ATOM 4 OP2 G A 56 58.010 153.728 29.752 1.00 56.95 O
ATOM 5 O5' G A 56 58.305 156.175 29.405 1.00 54.45 O
ATOM 6 C5' G A 56 57.870 157.490 28.992 1.00 50.59 C
ATOM 7 C4' G A 56 58.784 158.554 29.568 1.00 48.17 C
ATOM 8 O4' G A 56 58.779 158.470 31.017 1.00 47.43 O
ATOM 9 C3' G A 56 60.248 158.483 29.162 1.00 47.06 C
ATOM 10 O3' G A 56 60.787 159.798 29.243 1.00 48.74 O
ATOM 11 C2' G A 56 60.853 157.658 30.290 1.00 46.15 C
ATOM 12 O2' G A 56 62.232 157.900 30.442 1.00 46.49 O
ATOM 13 C1' G A 56 60.086 158.203 31.492 1.00 46.24 C
ATOM 14 N9 G A 56 59.973 157.292 32.631 1.00 46.52 N
ATOM 15 C8 G A 56 59.143 156.202 32.721 1.00 47.98 C
ATOM 16 N7 G A 56 59.217 155.592 33.871 1.00 48.65 N
ATOM 17 C5 G A 56 60.161 156.314 34.585 1.00 47.73 C
ATOM 18 C6 G A 56 60.647 156.128 35.900 1.00 47.73 C
ATOM 19 O6 G A 56 60.333 155.260 36.722 1.00 48.77 O
ATOM 20 N1 G A 56 61.593 157.085 36.232 1.00 45.86 N
ATOM 21 C2 G A 56 62.018 158.088 35.411 1.00 44.96 C
ATOM 22 N2 G A 56 62.945 158.895 35.920 1.00 45.61 N
ATOM 23 N3 G A 56 61.572 158.280 34.183 1.00 46.13 N
ATOM 24 C4 G A 56 60.648 157.362 33.835 1.00 46.62 C
ATOM 25 P A A 57 60.721 160.784 27.977 1.00 48.43 P
ATOM 26 OP1 A A 57 59.828 160.207 26.946 1.00 49.11 O
ATOM 27 OP2 A A 57 62.108 161.152 27.620 1.00 47.19 O
ATOM 28 O5' A A 57 59.985 162.078 28.541 1.00 49.69 O
TER
ATOM 1 O3' G B 56 60.787 159.798 29.243 1.00 48.74 O
ATOM 2 P A B 57 60.721 160.784 27.977 1.00 48.43 P
ATOM 3 OP1 A B 57 59.828 160.207 26.946 1.00 49.11 O
ATOM 4 OP2 A B 57 62.108 161.152 27.620 1.00 47.19 O
ATOM 5 O5' A B 57 59.985 162.078 28.541 1.00 49.69 O
ATOM 6 C5' A B 57 60.377 162.666 29.791 1.00 52.17 C
ATOM 7 C4' A B 57 60.859 164.081 29.572 1.00 53.55 C
ATOM 8 O4' A B 57 61.334 164.622 30.837 1.00 54.99 O
ATOM 9 C3' A B 57 62.037 164.195 28.614 1.00 53.82 C
ATOM 10 O3' A B 57 62.010 165.481 27.999 1.00 52.43 O
ATOM 11 C2' A B 57 63.224 164.086 29.558 1.00 55.05 C
ATOM 12 O2' A B 57 64.412 164.619 29.020 1.00 56.91 O
ATOM 13 C1' A B 57 62.718 164.901 30.747 1.00 55.89 C
ATOM 14 N9 A B 57 63.338 164.568 32.031 1.00 57.72 N
ATOM 15 C8 A B 57 63.974 165.429 32.893 1.00 58.70 C
ATOM 16 N7 A B 57 64.432 164.851 33.978 1.00 59.10 N
ATOM 17 C5 A B 57 64.076 163.520 33.819 1.00 59.39 C
ATOM 18 C6 A B 57 64.277 162.389 34.622 1.00 59.38 C
ATOM 19 N6 A B 57 64.914 162.417 35.794 1.00 59.42 N
ATOM 20 N1 A B 57 63.797 161.209 34.174 1.00 60.22 N
ATOM 21 C2 A B 57 63.159 161.180 32.997 1.00 59.78 C
ATOM 22 N3 A B 57 62.908 162.173 32.152 1.00 59.32 N
ATOM 23 C4 A B 57 63.400 163.331 32.626 1.00 59.01 C
ATOM 24 P U B 58 61.926 165.606 26.401 1.00 50.97 P
ATOM 25 OP1 U B 58 62.836 164.598 25.800 1.00 50.90 O
ATOM 26 OP2 U B 58 62.103 167.038 26.073 1.00 51.12 O
ATOM 27 O5' U B 58 60.422 165.216 26.069 1.00 48.79 O
TER
ATOM 2 P G A 56 57.558 154.855 28.903 1.00 56.99 P
ATOM 3 OP1 G A 56 57.701 154.758 27.426 1.00 57.02 O
ATOM 4 OP2 G A 56 58.010 153.728 29.752 1.00 56.95 O
ATOM 5 O5' G A 56 58.305 156.175 29.405 1.00 54.45 O
ATOM 6 C5' G A 56 57.870 157.490 28.992 1.00 50.59 C
ATOM 7 C4' G A 56 58.784 158.554 29.568 1.00 48.17 C
ATOM 8 O4' G A 56 58.779 158.470 31.017 1.00 47.43 O
ATOM 9 C3' G A 56 60.248 158.483 29.162 1.00 47.06 C
ATOM 10 O3' G A 56 60.787 159.798 29.243 1.00 48.74 O
ATOM 11 C2' G A 56 60.853 157.658 30.290 1.00 46.15 C
ATOM 12 O2' G A 56 62.232 157.900 30.442 1.00 46.49 O
ATOM 13 C1' G A 56 60.086 158.203 31.492 1.00 46.24 C
ATOM 14 N9 G A 56 59.973 157.292 32.631 1.00 46.52 N
ATOM 15 C8 G A 56 59.143 156.202 32.721 1.00 47.98 C
ATOM 16 N7 G A 56 59.217 155.592 33.871 1.00 48.65 N
ATOM 17 C5 G A 56 60.161 156.314 34.585 1.00 47.73 C
ATOM 18 C6 G A 56 60.647 156.128 35.900 1.00 47.73 C
ATOM 19 O6 G A 56 60.333 155.260 36.722 1.00 48.77 O
ATOM 20 N1 G A 56 61.593 157.085 36.232 1.00 45.86 N
ATOM 21 C2 G A 56 62.018 158.088 35.411 1.00 44.96 C
ATOM 22 N2 G A 56 62.945 158.895 35.920 1.00 45.61 N
ATOM 23 N3 G A 56 61.572 158.280 34.183 1.00 46.13 N
ATOM 24 C4 G A 56 60.648 157.362 33.835 1.00 46.62 C
ATOM 25 P A A 57 60.721 160.784 27.977 1.00 48.43 P
ATOM 26 OP1 A A 57 59.828 160.207 26.946 1.00 49.11 O
ATOM 27 OP2 A A 57 62.108 161.152 27.620 1.00 47.19 O
ATOM 28 O5' A A 57 59.985 162.078 28.541 1.00 49.69 O
TER
ATOM 1 O3' G B 56 60.787 159.798 29.243 1.00 48.74 O
ATOM 2 P A B 57 60.721 160.784 27.977 1.00 48.43 P
ATOM 3 OP1 A B 57 59.828 160.207 26.946 1.00 49.11 O
ATOM 4 OP2 A B 57 62.108 161.152 27.620 1.00 47.19 O
ATOM 5 O5' A B 57 59.985 162.078 28.541 1.00 49.69 O
ATOM 6 C5' A B 57 60.377 162.666 29.791 1.00 52.17 C
ATOM 7 C4' A B 57 60.859 164.081 29.572 1.00 53.55 C
ATOM 8 O4' A B 57 61.334 164.622 30.837 1.00 54.99 O
ATOM 9 C3' A B 57 62.037 164.195 28.614 1.00 53.82 C
ATOM 10 O3' A B 57 62.010 165.481 27.999 1.00 52.43 O
ATOM 11 C2' A B 57 63.224 164.086 29.558 1.00 55.05 C
ATOM 12 O2' A B 57 64.412 164.619 29.020 1.00 56.91 O
ATOM 13 C1' A B 57 62.718 164.901 30.747 1.00 55.89 C
ATOM 14 N9 A B 57 63.338 164.568 32.031 1.00 57.72 N
ATOM 15 C8 A B 57 63.974 165.429 32.893 1.00 58.70 C
ATOM 16 N7 A B 57 64.432 164.851 33.978 1.00 59.10 N
ATOM 17 C5 A B 57 64.076 163.520 33.819 1.00 59.39 C
ATOM 18 C6 A B 57 64.277 162.389 34.622 1.00 59.38 C
ATOM 19 N6 A B 57 64.914 162.417 35.794 1.00 59.42 N
ATOM 20 N1 A B 57 63.797 161.209 34.174 1.00 60.22 N
ATOM 21 C2 A B 57 63.159 161.180 32.997 1.00 59.78 C
ATOM 22 N3 A B 57 62.908 162.173 32.152 1.00 59.32 N
ATOM 23 C4 A B 57 63.400 163.331 32.626 1.00 59.01 C
ATOM 24 P U B 58 61.926 165.606 26.401 1.00 50.97 P
ATOM 25 OP1 U B 58 62.836 164.598 25.800 1.00 50.90 O
ATOM 26 OP2 U B 58 62.103 167.038 26.073 1.00 51.12 O
ATOM 27 O5' U B 58 60.422 165.216 26.069 1.00 48.79 O
TER
Atoms:
OP1: (57.701,154.758,27.426)
OP2: (58.010,153.728,29.752)
C3': (60.248,158.483,29.162)
C1': (60.086,158.203,31.492)
C5': (57.870,157.490,28.992)
O6: (60.333,155.260,36.722)
O4': (58.779,158.470,31.017)
C8: (59.143,156.202,32.721)
C2: (62.018,158.088,35.411)
C6: (60.647,156.128,35.900)
C5: (60.161,156.314,34.585)
C4: (60.648,157.362,33.835)
P: (57.558,154.855,28.903)
C4': (58.784,158.554,29.568)
C2': (60.853,157.658,30.290)
O2': (62.232,157.900,30.442)
N1: (61.593,157.085,36.232)
N2: (62.945,158.895,35.920)
N3: (61.572,158.280,34.183)
N7: (59.217,155.592,33.871)
N9: (59.973,157.292,32.631)
O5': (58.305,156.175,29.405)
O3': (60.787,159.798,29.243)
OP2: (58.010,153.728,29.752)
C3': (60.248,158.483,29.162)
C1': (60.086,158.203,31.492)
C5': (57.870,157.490,28.992)
O6: (60.333,155.260,36.722)
O4': (58.779,158.470,31.017)
C8: (59.143,156.202,32.721)
C2: (62.018,158.088,35.411)
C6: (60.647,156.128,35.900)
C5: (60.161,156.314,34.585)
C4: (60.648,157.362,33.835)
P: (57.558,154.855,28.903)
C4': (58.784,158.554,29.568)
C2': (60.853,157.658,30.290)
O2': (62.232,157.900,30.442)
N1: (61.593,157.085,36.232)
N2: (62.945,158.895,35.920)
N3: (61.572,158.280,34.183)
N7: (59.217,155.592,33.871)
N9: (59.973,157.292,32.631)
O5': (58.305,156.175,29.405)
O3': (60.787,159.798,29.243)
OP1: (59.828,160.207,26.946)
OP2: (62.108,161.152,27.620)
C3': (62.037,164.195,28.614)
C1': (62.718,164.901,30.747)
C5': (60.377,162.666,29.791)
O4': (61.334,164.622,30.837)
C8: (63.974,165.429,32.893)
O2': (64.412,164.619,29.020)
C6: (64.277,162.389,34.622)
C5: (64.076,163.520,33.819)
C4: (63.400,163.331,32.626)
P: (60.721,160.784,27.977)
C4': (60.859,164.081,29.572)
C2': (63.224,164.086,29.558)
C2: (63.159,161.180,32.997)
N1: (63.797,161.209,34.174)
N3: (62.908,162.173,32.152)
N6: (64.914,162.417,35.794)
N7: (64.432,164.851,33.978)
N9: (63.338,164.568,32.031)
O5': (59.985,162.078,28.541)
O3': (62.010,165.481,27.999)
OP2: (62.108,161.152,27.620)
C3': (62.037,164.195,28.614)
C1': (62.718,164.901,30.747)
C5': (60.377,162.666,29.791)
O4': (61.334,164.622,30.837)
C8: (63.974,165.429,32.893)
O2': (64.412,164.619,29.020)
C6: (64.277,162.389,34.622)
C5: (64.076,163.520,33.819)
C4: (63.400,163.331,32.626)
P: (60.721,160.784,27.977)
C4': (60.859,164.081,29.572)
C2': (63.224,164.086,29.558)
C2: (63.159,161.180,32.997)
N1: (63.797,161.209,34.174)
N3: (62.908,162.173,32.152)
N6: (64.914,162.417,35.794)
N7: (64.432,164.851,33.978)
N9: (63.338,164.568,32.031)
O5': (59.985,162.078,28.541)
O3': (62.010,165.481,27.999)
Image (generated by PyMOL):