Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2OIJ:B17:A5
Extra
PDB:
ATOM 1 O3' C A 16 -17.024 62.800 -74.326 1.00 46.53 O
ATOM 2 P G A 17 -16.475 62.455 -75.808 1.00 48.17 P
ATOM 3 OP1 G A 17 -17.004 63.478 -76.737 1.00 49.83 O
ATOM 4 OP2 G A 17 -16.738 61.013 -76.080 1.00 49.04 O
ATOM 5 O5' G A 17 -14.892 62.667 -75.702 1.00 47.44 O
ATOM 6 C5' G A 17 -14.360 63.990 -75.523 1.00 46.00 C
ATOM 7 C4' G A 17 -12.899 63.967 -75.102 1.00 45.53 C
ATOM 8 O4' G A 17 -12.698 63.163 -73.911 1.00 45.33 O
ATOM 9 C3' G A 17 -11.835 63.384 -76.022 1.00 43.80 C
ATOM 10 O3' G A 17 -11.523 64.225 -77.124 1.00 42.20 O
ATOM 11 C2' G A 17 -10.643 63.372 -75.073 1.00 43.13 C
ATOM 12 O2' G A 17 -10.125 64.676 -74.888 1.00 42.16 O
ATOM 13 C1' G A 17 -11.303 62.941 -73.759 1.00 43.22 C
ATOM 14 N9 G A 17 -11.051 61.532 -73.480 1.00 38.77 N
ATOM 15 C8 G A 17 -11.923 60.472 -73.577 1.00 40.72 C
ATOM 16 N7 G A 17 -11.378 59.328 -73.244 1.00 39.21 N
ATOM 17 C5 G A 17 -10.066 59.654 -72.923 1.00 37.99 C
ATOM 18 C6 G A 17 -8.984 58.827 -72.508 1.00 37.65 C
ATOM 19 O6 G A 17 -8.974 57.600 -72.332 1.00 35.10 O
ATOM 20 N1 G A 17 -7.828 59.566 -72.287 1.00 34.17 N
ATOM 21 C2 G A 17 -7.725 60.929 -72.424 1.00 38.42 C
ATOM 22 N2 G A 17 -6.542 61.472 -72.096 1.00 36.83 N
ATOM 23 N3 G A 17 -8.719 61.711 -72.833 1.00 36.95 N
ATOM 24 C4 G A 17 -9.851 61.009 -73.060 1.00 38.75 C
ATOM 25 P G A 18 -10.736 63.620 -78.387 1.00 41.99 P
ATOM 26 OP1 G A 18 -10.691 64.657 -79.429 1.00 41.80 O
ATOM 27 OP2 G A 18 -11.312 62.285 -78.704 1.00 40.63 O
ATOM 28 O5' G A 18 -9.255 63.347 -77.851 1.00 39.47 O
TER
ATOM 1 O3' C B 4 -1.397 51.518 -70.432 1.00 31.32 O
ATOM 2 P U B 5 -1.982 51.913 -68.982 1.00 33.38 P
ATOM 3 OP1 U B 5 -0.934 51.626 -67.977 1.00 33.75 O
ATOM 4 OP2 U B 5 -3.331 51.287 -68.840 1.00 31.77 O
ATOM 5 O5' U B 5 -2.210 53.490 -69.089 1.00 31.90 O
ATOM 6 C5' U B 5 -1.142 54.364 -69.499 1.00 30.13 C
ATOM 7 C4' U B 5 -1.657 55.776 -69.728 1.00 31.38 C
ATOM 8 O4' U B 5 -2.442 55.864 -70.953 1.00 30.32 O
ATOM 9 C3' U B 5 -2.601 56.336 -68.685 1.00 30.86 C
ATOM 10 O3' U B 5 -1.913 56.754 -67.525 1.00 34.40 O
ATOM 11 C2' U B 5 -3.210 57.509 -69.437 1.00 32.48 C
ATOM 12 O2' U B 5 -2.303 58.597 -69.564 1.00 32.42 O
ATOM 13 C1' U B 5 -3.425 56.884 -70.810 1.00 31.68 C
ATOM 14 N1 U B 5 -4.749 56.260 -70.920 1.00 33.23 N
ATOM 15 C2 U B 5 -5.814 57.064 -71.340 1.00 33.36 C
ATOM 16 O2 U B 5 -5.692 58.259 -71.584 1.00 31.00 O
ATOM 17 N3 U B 5 -7.021 56.413 -71.455 1.00 32.32 N
ATOM 18 C4 U B 5 -7.272 55.081 -71.191 1.00 35.02 C
ATOM 19 O4 U B 5 -8.394 54.635 -71.401 1.00 33.41 O
ATOM 20 C5 U B 5 -6.130 54.324 -70.738 1.00 33.74 C
ATOM 21 C6 U B 5 -4.939 54.924 -70.625 1.00 33.55 C
ATOM 22 P G B 6 -2.692 56.808 -66.127 1.00 35.99 P
ATOM 23 OP1 G B 6 -1.692 56.847 -65.016 1.00 37.71 O
ATOM 24 OP2 G B 6 -3.714 55.711 -66.160 1.00 36.97 O
ATOM 25 O5' G B 6 -3.438 58.221 -66.196 1.00 37.48 O
TER
ATOM 2 P G A 17 -16.475 62.455 -75.808 1.00 48.17 P
ATOM 3 OP1 G A 17 -17.004 63.478 -76.737 1.00 49.83 O
ATOM 4 OP2 G A 17 -16.738 61.013 -76.080 1.00 49.04 O
ATOM 5 O5' G A 17 -14.892 62.667 -75.702 1.00 47.44 O
ATOM 6 C5' G A 17 -14.360 63.990 -75.523 1.00 46.00 C
ATOM 7 C4' G A 17 -12.899 63.967 -75.102 1.00 45.53 C
ATOM 8 O4' G A 17 -12.698 63.163 -73.911 1.00 45.33 O
ATOM 9 C3' G A 17 -11.835 63.384 -76.022 1.00 43.80 C
ATOM 10 O3' G A 17 -11.523 64.225 -77.124 1.00 42.20 O
ATOM 11 C2' G A 17 -10.643 63.372 -75.073 1.00 43.13 C
ATOM 12 O2' G A 17 -10.125 64.676 -74.888 1.00 42.16 O
ATOM 13 C1' G A 17 -11.303 62.941 -73.759 1.00 43.22 C
ATOM 14 N9 G A 17 -11.051 61.532 -73.480 1.00 38.77 N
ATOM 15 C8 G A 17 -11.923 60.472 -73.577 1.00 40.72 C
ATOM 16 N7 G A 17 -11.378 59.328 -73.244 1.00 39.21 N
ATOM 17 C5 G A 17 -10.066 59.654 -72.923 1.00 37.99 C
ATOM 18 C6 G A 17 -8.984 58.827 -72.508 1.00 37.65 C
ATOM 19 O6 G A 17 -8.974 57.600 -72.332 1.00 35.10 O
ATOM 20 N1 G A 17 -7.828 59.566 -72.287 1.00 34.17 N
ATOM 21 C2 G A 17 -7.725 60.929 -72.424 1.00 38.42 C
ATOM 22 N2 G A 17 -6.542 61.472 -72.096 1.00 36.83 N
ATOM 23 N3 G A 17 -8.719 61.711 -72.833 1.00 36.95 N
ATOM 24 C4 G A 17 -9.851 61.009 -73.060 1.00 38.75 C
ATOM 25 P G A 18 -10.736 63.620 -78.387 1.00 41.99 P
ATOM 26 OP1 G A 18 -10.691 64.657 -79.429 1.00 41.80 O
ATOM 27 OP2 G A 18 -11.312 62.285 -78.704 1.00 40.63 O
ATOM 28 O5' G A 18 -9.255 63.347 -77.851 1.00 39.47 O
TER
ATOM 1 O3' C B 4 -1.397 51.518 -70.432 1.00 31.32 O
ATOM 2 P U B 5 -1.982 51.913 -68.982 1.00 33.38 P
ATOM 3 OP1 U B 5 -0.934 51.626 -67.977 1.00 33.75 O
ATOM 4 OP2 U B 5 -3.331 51.287 -68.840 1.00 31.77 O
ATOM 5 O5' U B 5 -2.210 53.490 -69.089 1.00 31.90 O
ATOM 6 C5' U B 5 -1.142 54.364 -69.499 1.00 30.13 C
ATOM 7 C4' U B 5 -1.657 55.776 -69.728 1.00 31.38 C
ATOM 8 O4' U B 5 -2.442 55.864 -70.953 1.00 30.32 O
ATOM 9 C3' U B 5 -2.601 56.336 -68.685 1.00 30.86 C
ATOM 10 O3' U B 5 -1.913 56.754 -67.525 1.00 34.40 O
ATOM 11 C2' U B 5 -3.210 57.509 -69.437 1.00 32.48 C
ATOM 12 O2' U B 5 -2.303 58.597 -69.564 1.00 32.42 O
ATOM 13 C1' U B 5 -3.425 56.884 -70.810 1.00 31.68 C
ATOM 14 N1 U B 5 -4.749 56.260 -70.920 1.00 33.23 N
ATOM 15 C2 U B 5 -5.814 57.064 -71.340 1.00 33.36 C
ATOM 16 O2 U B 5 -5.692 58.259 -71.584 1.00 31.00 O
ATOM 17 N3 U B 5 -7.021 56.413 -71.455 1.00 32.32 N
ATOM 18 C4 U B 5 -7.272 55.081 -71.191 1.00 35.02 C
ATOM 19 O4 U B 5 -8.394 54.635 -71.401 1.00 33.41 O
ATOM 20 C5 U B 5 -6.130 54.324 -70.738 1.00 33.74 C
ATOM 21 C6 U B 5 -4.939 54.924 -70.625 1.00 33.55 C
ATOM 22 P G B 6 -2.692 56.808 -66.127 1.00 35.99 P
ATOM 23 OP1 G B 6 -1.692 56.847 -65.016 1.00 37.71 O
ATOM 24 OP2 G B 6 -3.714 55.711 -66.160 1.00 36.97 O
ATOM 25 O5' G B 6 -3.438 58.221 -66.196 1.00 37.48 O
TER
Atoms:
OP1: (-17.004,63.478,-76.737)
OP2: (-16.738,61.013,-76.080)
C3': (-11.835,63.384,-76.022)
C1': (-11.303,62.941,-73.759)
C5': (-14.360,63.990,-75.523)
O6: (-8.974,57.600,-72.332)
O4': (-12.698,63.163,-73.911)
C8: (-11.923,60.472,-73.577)
C2: (-7.725,60.929,-72.424)
C6: (-8.984,58.827,-72.508)
C5: (-10.066,59.654,-72.923)
C4: (-9.851,61.009,-73.060)
P: (-16.475,62.455,-75.808)
C4': (-12.899,63.967,-75.102)
C2': (-10.643,63.372,-75.073)
O2': (-10.125,64.676,-74.888)
N1: (-7.828,59.566,-72.287)
N2: (-6.542,61.472,-72.096)
N3: (-8.719,61.711,-72.833)
N7: (-11.378,59.328,-73.244)
N9: (-11.051,61.532,-73.480)
O5': (-14.892,62.667,-75.702)
O3': (-11.523,64.225,-77.124)
OP2: (-16.738,61.013,-76.080)
C3': (-11.835,63.384,-76.022)
C1': (-11.303,62.941,-73.759)
C5': (-14.360,63.990,-75.523)
O6: (-8.974,57.600,-72.332)
O4': (-12.698,63.163,-73.911)
C8: (-11.923,60.472,-73.577)
C2: (-7.725,60.929,-72.424)
C6: (-8.984,58.827,-72.508)
C5: (-10.066,59.654,-72.923)
C4: (-9.851,61.009,-73.060)
P: (-16.475,62.455,-75.808)
C4': (-12.899,63.967,-75.102)
C2': (-10.643,63.372,-75.073)
O2': (-10.125,64.676,-74.888)
N1: (-7.828,59.566,-72.287)
N2: (-6.542,61.472,-72.096)
N3: (-8.719,61.711,-72.833)
N7: (-11.378,59.328,-73.244)
N9: (-11.051,61.532,-73.480)
O5': (-14.892,62.667,-75.702)
O3': (-11.523,64.225,-77.124)
C4: (-7.272,55.081,-71.191)
N3: (-7.021,56.413,-71.455)
OP1: (-0.934,51.626,-67.977)
OP2: (-3.331,51.287,-68.840)
C2: (-5.814,57.064,-71.340)
C1': (-3.425,56.884,-70.810)
C3': (-2.601,56.336,-68.685)
O5': (-2.210,53.490,-69.089)
O4': (-2.442,55.864,-70.953)
C5': (-1.142,54.364,-69.499)
P: (-1.982,51.913,-68.982)
C4': (-1.657,55.776,-69.728)
C2': (-3.210,57.509,-69.437)
O2': (-2.303,58.597,-69.564)
N1: (-4.749,56.260,-70.920)
O4: (-8.394,54.635,-71.401)
O2: (-5.692,58.259,-71.584)
C6: (-4.939,54.924,-70.625)
C5: (-6.130,54.324,-70.738)
O3': (-1.913,56.754,-67.525)
N3: (-7.021,56.413,-71.455)
OP1: (-0.934,51.626,-67.977)
OP2: (-3.331,51.287,-68.840)
C2: (-5.814,57.064,-71.340)
C1': (-3.425,56.884,-70.810)
C3': (-2.601,56.336,-68.685)
O5': (-2.210,53.490,-69.089)
O4': (-2.442,55.864,-70.953)
C5': (-1.142,54.364,-69.499)
P: (-1.982,51.913,-68.982)
C4': (-1.657,55.776,-69.728)
C2': (-3.210,57.509,-69.437)
O2': (-2.303,58.597,-69.564)
N1: (-4.749,56.260,-70.920)
O4: (-8.394,54.635,-71.401)
O2: (-5.692,58.259,-71.584)
C6: (-4.939,54.924,-70.625)
C5: (-6.130,54.324,-70.738)
O3': (-1.913,56.754,-67.525)
Image (generated by PyMOL):