Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:02039:02493
Extra
PDB:
ATOM 1 O3' G A2038 56.587 137.948 109.053 1.00 38.19 O
ATOM 2 P G A2039 57.435 136.843 109.838 1.00 39.71 P
ATOM 3 OP1 G A2039 58.014 137.553 111.010 1.00 40.83 O
ATOM 4 OP2 G A2039 58.327 136.126 108.906 1.00 37.83 O
ATOM 5 O5' G A2039 56.330 135.816 110.349 1.00 35.20 O
ATOM 6 C5' G A2039 56.685 134.768 111.257 1.00 35.18 C
ATOM 7 C4' G A2039 55.496 133.882 111.547 1.00 33.11 C
ATOM 8 O4' G A2039 54.394 134.683 112.042 1.00 34.91 O
ATOM 9 C3' G A2039 54.890 133.144 110.377 1.00 32.15 C
ATOM 10 O3' G A2039 55.642 132.000 110.041 1.00 30.98 O
ATOM 11 C2' G A2039 53.512 132.807 110.919 1.00 33.16 C
ATOM 12 O2' G A2039 53.518 131.774 111.877 1.00 35.86 O
ATOM 13 C1' G A2039 53.165 134.107 111.637 1.00 33.54 C
ATOM 14 N9 G A2039 52.504 135.034 110.726 1.00 35.13 N
ATOM 15 C8 G A2039 53.011 136.202 110.203 1.00 34.07 C
ATOM 16 N7 G A2039 52.188 136.794 109.385 1.00 34.61 N
ATOM 17 C5 G A2039 51.064 135.974 109.376 1.00 37.31 C
ATOM 18 C6 G A2039 49.841 136.101 108.682 1.00 38.42 C
ATOM 19 O6 G A2039 49.484 137.003 107.921 1.00 42.32 O
ATOM 20 N1 G A2039 48.984 135.040 108.950 1.00 37.43 N
ATOM 21 C2 G A2039 49.262 133.994 109.787 1.00 37.54 C
ATOM 22 N2 G A2039 48.308 133.055 109.916 1.00 36.73 N
ATOM 23 N3 G A2039 50.392 133.870 110.451 1.00 37.98 N
ATOM 24 C4 G A2039 51.243 134.888 110.199 1.00 36.63 C
ATOM 25 P G A2040 55.729 131.539 108.512 1.00 33.01 P
ATOM 26 OP1 G A2040 56.649 130.382 108.465 1.00 33.30 O
ATOM 27 OP2 G A2040 55.984 132.713 107.642 1.00 28.08 O
ATOM 28 O5' G A2040 54.256 131.024 108.208 1.00 31.61 O
TER
ATOM 1 O3' C B2492 40.457 137.140 103.384 1.00 39.57 O
ATOM 2 P U B2493 40.258 137.745 104.858 1.00 42.88 P
ATOM 3 OP1 U B2493 38.835 137.578 105.215 1.00 40.95 O
ATOM 4 OP2 U B2493 40.878 139.094 104.916 1.00 41.66 O
ATOM 5 O5' U B2493 41.112 136.783 105.794 1.00 40.32 O
ATOM 6 C5' U B2493 40.777 135.402 105.906 1.00 39.57 C
ATOM 7 C4' U B2493 41.909 134.634 106.538 1.00 39.34 C
ATOM 8 O4' U B2493 43.102 134.714 105.716 1.00 38.32 O
ATOM 9 C3' U B2493 42.373 135.116 107.897 1.00 37.58 C
ATOM 10 O3' U B2493 41.491 134.655 108.911 1.00 38.81 O
ATOM 11 C2' U B2493 43.749 134.474 107.979 1.00 36.67 C
ATOM 12 O2' U B2493 43.687 133.082 108.209 1.00 36.02 O
ATOM 13 C1' U B2493 44.246 134.670 106.549 1.00 37.71 C
ATOM 14 N1 U B2493 45.002 135.920 106.383 1.00 39.66 N
ATOM 15 C2 U B2493 46.343 135.921 106.743 1.00 40.92 C
ATOM 16 O2 U B2493 46.920 134.939 107.178 1.00 41.95 O
ATOM 17 N3 U B2493 46.984 137.121 106.578 1.00 40.46 N
ATOM 18 C4 U B2493 46.446 138.290 106.106 1.00 39.14 C
ATOM 19 O4 U B2493 47.139 139.301 106.075 1.00 39.62 O
ATOM 20 C5 U B2493 45.069 138.208 105.748 1.00 40.24 C
ATOM 21 C6 U B2493 44.409 137.057 105.896 1.00 40.14 C
ATOM 22 P A B2494 41.297 135.511 110.255 1.00 39.28 P
ATOM 23 OP1 A B2494 40.427 134.695 111.161 1.00 38.98 O
ATOM 24 OP2 A B2494 40.876 136.885 109.883 1.00 40.75 O
ATOM 25 O5' A B2494 42.764 135.587 110.875 1.00 40.00 O
TER
ATOM 2 P G A2039 57.435 136.843 109.838 1.00 39.71 P
ATOM 3 OP1 G A2039 58.014 137.553 111.010 1.00 40.83 O
ATOM 4 OP2 G A2039 58.327 136.126 108.906 1.00 37.83 O
ATOM 5 O5' G A2039 56.330 135.816 110.349 1.00 35.20 O
ATOM 6 C5' G A2039 56.685 134.768 111.257 1.00 35.18 C
ATOM 7 C4' G A2039 55.496 133.882 111.547 1.00 33.11 C
ATOM 8 O4' G A2039 54.394 134.683 112.042 1.00 34.91 O
ATOM 9 C3' G A2039 54.890 133.144 110.377 1.00 32.15 C
ATOM 10 O3' G A2039 55.642 132.000 110.041 1.00 30.98 O
ATOM 11 C2' G A2039 53.512 132.807 110.919 1.00 33.16 C
ATOM 12 O2' G A2039 53.518 131.774 111.877 1.00 35.86 O
ATOM 13 C1' G A2039 53.165 134.107 111.637 1.00 33.54 C
ATOM 14 N9 G A2039 52.504 135.034 110.726 1.00 35.13 N
ATOM 15 C8 G A2039 53.011 136.202 110.203 1.00 34.07 C
ATOM 16 N7 G A2039 52.188 136.794 109.385 1.00 34.61 N
ATOM 17 C5 G A2039 51.064 135.974 109.376 1.00 37.31 C
ATOM 18 C6 G A2039 49.841 136.101 108.682 1.00 38.42 C
ATOM 19 O6 G A2039 49.484 137.003 107.921 1.00 42.32 O
ATOM 20 N1 G A2039 48.984 135.040 108.950 1.00 37.43 N
ATOM 21 C2 G A2039 49.262 133.994 109.787 1.00 37.54 C
ATOM 22 N2 G A2039 48.308 133.055 109.916 1.00 36.73 N
ATOM 23 N3 G A2039 50.392 133.870 110.451 1.00 37.98 N
ATOM 24 C4 G A2039 51.243 134.888 110.199 1.00 36.63 C
ATOM 25 P G A2040 55.729 131.539 108.512 1.00 33.01 P
ATOM 26 OP1 G A2040 56.649 130.382 108.465 1.00 33.30 O
ATOM 27 OP2 G A2040 55.984 132.713 107.642 1.00 28.08 O
ATOM 28 O5' G A2040 54.256 131.024 108.208 1.00 31.61 O
TER
ATOM 1 O3' C B2492 40.457 137.140 103.384 1.00 39.57 O
ATOM 2 P U B2493 40.258 137.745 104.858 1.00 42.88 P
ATOM 3 OP1 U B2493 38.835 137.578 105.215 1.00 40.95 O
ATOM 4 OP2 U B2493 40.878 139.094 104.916 1.00 41.66 O
ATOM 5 O5' U B2493 41.112 136.783 105.794 1.00 40.32 O
ATOM 6 C5' U B2493 40.777 135.402 105.906 1.00 39.57 C
ATOM 7 C4' U B2493 41.909 134.634 106.538 1.00 39.34 C
ATOM 8 O4' U B2493 43.102 134.714 105.716 1.00 38.32 O
ATOM 9 C3' U B2493 42.373 135.116 107.897 1.00 37.58 C
ATOM 10 O3' U B2493 41.491 134.655 108.911 1.00 38.81 O
ATOM 11 C2' U B2493 43.749 134.474 107.979 1.00 36.67 C
ATOM 12 O2' U B2493 43.687 133.082 108.209 1.00 36.02 O
ATOM 13 C1' U B2493 44.246 134.670 106.549 1.00 37.71 C
ATOM 14 N1 U B2493 45.002 135.920 106.383 1.00 39.66 N
ATOM 15 C2 U B2493 46.343 135.921 106.743 1.00 40.92 C
ATOM 16 O2 U B2493 46.920 134.939 107.178 1.00 41.95 O
ATOM 17 N3 U B2493 46.984 137.121 106.578 1.00 40.46 N
ATOM 18 C4 U B2493 46.446 138.290 106.106 1.00 39.14 C
ATOM 19 O4 U B2493 47.139 139.301 106.075 1.00 39.62 O
ATOM 20 C5 U B2493 45.069 138.208 105.748 1.00 40.24 C
ATOM 21 C6 U B2493 44.409 137.057 105.896 1.00 40.14 C
ATOM 22 P A B2494 41.297 135.511 110.255 1.00 39.28 P
ATOM 23 OP1 A B2494 40.427 134.695 111.161 1.00 38.98 O
ATOM 24 OP2 A B2494 40.876 136.885 109.883 1.00 40.75 O
ATOM 25 O5' A B2494 42.764 135.587 110.875 1.00 40.00 O
TER
Atoms:
OP1: (58.014,137.553,111.010)
OP2: (58.327,136.126,108.906)
C3': (54.890,133.144,110.377)
C1': (53.165,134.107,111.637)
C5': (56.685,134.768,111.257)
O6: (49.484,137.003,107.921)
O4': (54.394,134.683,112.042)
C8: (53.011,136.202,110.203)
C2: (49.262,133.994,109.787)
C6: (49.841,136.101,108.682)
C5: (51.064,135.974,109.376)
C4: (51.243,134.888,110.199)
P: (57.435,136.843,109.838)
C4': (55.496,133.882,111.547)
C2': (53.512,132.807,110.919)
O2': (53.518,131.774,111.877)
N1: (48.984,135.040,108.950)
N2: (48.308,133.055,109.916)
N3: (50.392,133.870,110.451)
N7: (52.188,136.794,109.385)
N9: (52.504,135.034,110.726)
O5': (56.330,135.816,110.349)
O3': (55.642,132.000,110.041)
OP2: (58.327,136.126,108.906)
C3': (54.890,133.144,110.377)
C1': (53.165,134.107,111.637)
C5': (56.685,134.768,111.257)
O6: (49.484,137.003,107.921)
O4': (54.394,134.683,112.042)
C8: (53.011,136.202,110.203)
C2: (49.262,133.994,109.787)
C6: (49.841,136.101,108.682)
C5: (51.064,135.974,109.376)
C4: (51.243,134.888,110.199)
P: (57.435,136.843,109.838)
C4': (55.496,133.882,111.547)
C2': (53.512,132.807,110.919)
O2': (53.518,131.774,111.877)
N1: (48.984,135.040,108.950)
N2: (48.308,133.055,109.916)
N3: (50.392,133.870,110.451)
N7: (52.188,136.794,109.385)
N9: (52.504,135.034,110.726)
O5': (56.330,135.816,110.349)
O3': (55.642,132.000,110.041)
C4: (46.446,138.290,106.106)
N3: (46.984,137.121,106.578)
OP1: (38.835,137.578,105.215)
OP2: (40.878,139.094,104.916)
C2: (46.343,135.921,106.743)
C1': (44.246,134.670,106.549)
C3': (42.373,135.116,107.897)
O5': (41.112,136.783,105.794)
O4': (43.102,134.714,105.716)
C5': (40.777,135.402,105.906)
P: (40.258,137.745,104.858)
C4': (41.909,134.634,106.538)
C2': (43.749,134.474,107.979)
O2': (43.687,133.082,108.209)
N1: (45.002,135.920,106.383)
O4: (47.139,139.301,106.075)
O2: (46.920,134.939,107.178)
C6: (44.409,137.057,105.896)
C5: (45.069,138.208,105.748)
O3': (41.491,134.655,108.911)
N3: (46.984,137.121,106.578)
OP1: (38.835,137.578,105.215)
OP2: (40.878,139.094,104.916)
C2: (46.343,135.921,106.743)
C1': (44.246,134.670,106.549)
C3': (42.373,135.116,107.897)
O5': (41.112,136.783,105.794)
O4': (43.102,134.714,105.716)
C5': (40.777,135.402,105.906)
P: (40.258,137.745,104.858)
C4': (41.909,134.634,106.538)
C2': (43.749,134.474,107.979)
O2': (43.687,133.082,108.209)
N1: (45.002,135.920,106.383)
O4: (47.139,139.301,106.075)
O2: (46.920,134.939,107.178)
C6: (44.409,137.057,105.896)
C5: (45.069,138.208,105.748)
O3': (41.491,134.655,108.911)
Image (generated by PyMOL):