Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD4:B7:A2
Extra
PDB:
ATOM 1 O3' A A 6 8.666 0.701 76.523 1.00 28.97 O
ATOM 2 P G A 7 7.196 0.093 76.301 1.00 27.84 P
ATOM 3 OP1 G A 7 7.389 -1.362 76.066 1.00 29.89 O
ATOM 4 OP2 G A 7 6.472 0.907 75.297 1.00 26.07 O
ATOM 5 O5' G A 7 6.465 0.293 77.700 1.00 27.14 O
ATOM 6 C5' G A 7 6.849 -0.448 78.852 1.00 27.11 C
ATOM 7 C4' G A 7 5.993 -0.048 80.030 1.00 26.35 C
ATOM 8 O4' G A 7 6.228 1.351 80.345 1.00 23.95 O
ATOM 9 C3' G A 7 4.496 -0.124 79.776 1.00 26.61 C
ATOM 10 O3' G A 7 4.024 -1.448 79.999 1.00 28.69 O
ATOM 11 C2' G A 7 3.948 0.865 80.793 1.00 25.24 C
ATOM 12 O2' G A 7 3.914 0.333 82.101 1.00 26.05 O
ATOM 13 C1' G A 7 5.011 1.964 80.742 1.00 24.41 C
ATOM 14 N9 G A 7 4.724 3.045 79.801 1.00 21.45 N
ATOM 15 C8 G A 7 5.390 3.311 78.628 1.00 23.19 C
ATOM 16 N7 G A 7 4.955 4.384 78.023 1.00 21.58 N
ATOM 17 C5 G A 7 3.931 4.848 78.837 1.00 19.14 C
ATOM 18 C6 G A 7 3.095 5.987 78.703 1.00 19.26 C
ATOM 19 O6 G A 7 3.100 6.848 77.814 1.00 20.97 O
ATOM 20 N1 G A 7 2.184 6.077 79.747 1.00 18.60 N
ATOM 21 C2 G A 7 2.086 5.190 80.789 1.00 20.54 C
ATOM 22 N2 G A 7 1.128 5.446 81.699 1.00 21.48 N
ATOM 23 N3 G A 7 2.864 4.130 80.931 1.00 20.74 N
ATOM 24 C4 G A 7 3.760 4.021 79.928 1.00 21.36 C
ATOM 25 P C A 8 2.915 -2.073 79.022 1.00 28.55 P
ATOM 26 OP1 C A 8 2.713 -3.469 79.487 1.00 31.53 O
ATOM 27 OP2 C A 8 3.281 -1.818 77.611 1.00 27.36 O
ATOM 28 O5' C A 8 1.594 -1.255 79.355 1.00 27.86 O
TER
ATOM 1 O3' G B 1 -3.702 13.854 76.291 1.00 29.50 O
ATOM 2 P U B 2 -2.684 14.579 77.300 1.00 32.25 P
ATOM 3 OP1 U B 2 -3.399 15.753 77.875 1.00 31.87 O
ATOM 4 OP2 U B 2 -1.399 14.776 76.595 1.00 26.62 O
ATOM 5 O5' U B 2 -2.463 13.503 78.454 1.00 30.24 O
ATOM 6 C5' U B 2 -3.554 13.048 79.255 1.00 32.03 C
ATOM 7 C4' U B 2 -3.135 11.851 80.082 1.00 32.53 C
ATOM 8 O4' U B 2 -2.763 10.763 79.194 1.00 31.85 O
ATOM 9 C3' U B 2 -1.907 12.056 80.956 1.00 33.16 C
ATOM 10 O3' U B 2 -2.267 12.635 82.209 1.00 36.83 O
ATOM 11 C2' U B 2 -1.396 10.630 81.137 1.00 33.16 C
ATOM 12 O2' U B 2 -2.101 9.916 82.134 1.00 31.24 O
ATOM 13 C1' U B 2 -1.696 10.021 79.764 1.00 30.55 C
ATOM 14 N1 U B 2 -0.556 10.051 78.834 1.00 30.36 N
ATOM 15 C2 U B 2 0.362 9.010 78.907 1.00 28.83 C
ATOM 16 O2 U B 2 0.272 8.106 79.716 1.00 27.04 O
ATOM 17 N3 U B 2 1.387 9.074 77.998 1.00 26.15 N
ATOM 18 C4 U B 2 1.594 10.049 77.045 1.00 27.73 C
ATOM 19 O4 U B 2 2.525 9.924 76.241 1.00 26.33 O
ATOM 20 C5 U B 2 0.615 11.100 77.047 1.00 28.66 C
ATOM 21 C6 U B 2 -0.400 11.063 77.919 1.00 29.16 C
ATOM 22 P C B 3 -1.364 13.811 82.834 1.00 37.20 P
ATOM 23 OP1 C B 3 -1.988 14.166 84.135 1.00 38.07 O
ATOM 24 OP2 C B 3 -1.145 14.860 81.808 1.00 37.77 O
ATOM 25 O5' C B 3 0.052 13.133 83.098 1.00 38.53 O
TER
ATOM 2 P G A 7 7.196 0.093 76.301 1.00 27.84 P
ATOM 3 OP1 G A 7 7.389 -1.362 76.066 1.00 29.89 O
ATOM 4 OP2 G A 7 6.472 0.907 75.297 1.00 26.07 O
ATOM 5 O5' G A 7 6.465 0.293 77.700 1.00 27.14 O
ATOM 6 C5' G A 7 6.849 -0.448 78.852 1.00 27.11 C
ATOM 7 C4' G A 7 5.993 -0.048 80.030 1.00 26.35 C
ATOM 8 O4' G A 7 6.228 1.351 80.345 1.00 23.95 O
ATOM 9 C3' G A 7 4.496 -0.124 79.776 1.00 26.61 C
ATOM 10 O3' G A 7 4.024 -1.448 79.999 1.00 28.69 O
ATOM 11 C2' G A 7 3.948 0.865 80.793 1.00 25.24 C
ATOM 12 O2' G A 7 3.914 0.333 82.101 1.00 26.05 O
ATOM 13 C1' G A 7 5.011 1.964 80.742 1.00 24.41 C
ATOM 14 N9 G A 7 4.724 3.045 79.801 1.00 21.45 N
ATOM 15 C8 G A 7 5.390 3.311 78.628 1.00 23.19 C
ATOM 16 N7 G A 7 4.955 4.384 78.023 1.00 21.58 N
ATOM 17 C5 G A 7 3.931 4.848 78.837 1.00 19.14 C
ATOM 18 C6 G A 7 3.095 5.987 78.703 1.00 19.26 C
ATOM 19 O6 G A 7 3.100 6.848 77.814 1.00 20.97 O
ATOM 20 N1 G A 7 2.184 6.077 79.747 1.00 18.60 N
ATOM 21 C2 G A 7 2.086 5.190 80.789 1.00 20.54 C
ATOM 22 N2 G A 7 1.128 5.446 81.699 1.00 21.48 N
ATOM 23 N3 G A 7 2.864 4.130 80.931 1.00 20.74 N
ATOM 24 C4 G A 7 3.760 4.021 79.928 1.00 21.36 C
ATOM 25 P C A 8 2.915 -2.073 79.022 1.00 28.55 P
ATOM 26 OP1 C A 8 2.713 -3.469 79.487 1.00 31.53 O
ATOM 27 OP2 C A 8 3.281 -1.818 77.611 1.00 27.36 O
ATOM 28 O5' C A 8 1.594 -1.255 79.355 1.00 27.86 O
TER
ATOM 1 O3' G B 1 -3.702 13.854 76.291 1.00 29.50 O
ATOM 2 P U B 2 -2.684 14.579 77.300 1.00 32.25 P
ATOM 3 OP1 U B 2 -3.399 15.753 77.875 1.00 31.87 O
ATOM 4 OP2 U B 2 -1.399 14.776 76.595 1.00 26.62 O
ATOM 5 O5' U B 2 -2.463 13.503 78.454 1.00 30.24 O
ATOM 6 C5' U B 2 -3.554 13.048 79.255 1.00 32.03 C
ATOM 7 C4' U B 2 -3.135 11.851 80.082 1.00 32.53 C
ATOM 8 O4' U B 2 -2.763 10.763 79.194 1.00 31.85 O
ATOM 9 C3' U B 2 -1.907 12.056 80.956 1.00 33.16 C
ATOM 10 O3' U B 2 -2.267 12.635 82.209 1.00 36.83 O
ATOM 11 C2' U B 2 -1.396 10.630 81.137 1.00 33.16 C
ATOM 12 O2' U B 2 -2.101 9.916 82.134 1.00 31.24 O
ATOM 13 C1' U B 2 -1.696 10.021 79.764 1.00 30.55 C
ATOM 14 N1 U B 2 -0.556 10.051 78.834 1.00 30.36 N
ATOM 15 C2 U B 2 0.362 9.010 78.907 1.00 28.83 C
ATOM 16 O2 U B 2 0.272 8.106 79.716 1.00 27.04 O
ATOM 17 N3 U B 2 1.387 9.074 77.998 1.00 26.15 N
ATOM 18 C4 U B 2 1.594 10.049 77.045 1.00 27.73 C
ATOM 19 O4 U B 2 2.525 9.924 76.241 1.00 26.33 O
ATOM 20 C5 U B 2 0.615 11.100 77.047 1.00 28.66 C
ATOM 21 C6 U B 2 -0.400 11.063 77.919 1.00 29.16 C
ATOM 22 P C B 3 -1.364 13.811 82.834 1.00 37.20 P
ATOM 23 OP1 C B 3 -1.988 14.166 84.135 1.00 38.07 O
ATOM 24 OP2 C B 3 -1.145 14.860 81.808 1.00 37.77 O
ATOM 25 O5' C B 3 0.052 13.133 83.098 1.00 38.53 O
TER
Atoms:
OP1: (7.389,-1.362,76.066)
OP2: (6.472,0.907,75.297)
C3': (4.496,-0.124,79.776)
C1': (5.011,1.964,80.742)
C5': (6.849,-0.448,78.852)
O6: (3.100,6.848,77.814)
O4': (6.228,1.351,80.345)
C8: (5.390,3.311,78.628)
C2: (2.086,5.190,80.789)
C6: (3.095,5.987,78.703)
C5: (3.931,4.848,78.837)
C4: (3.760,4.021,79.928)
P: (7.196,0.093,76.301)
C4': (5.993,-0.048,80.030)
C2': (3.948,0.865,80.793)
O2': (3.914,0.333,82.101)
N1: (2.184,6.077,79.747)
N2: (1.128,5.446,81.699)
N3: (2.864,4.130,80.931)
N7: (4.955,4.384,78.023)
N9: (4.724,3.045,79.801)
O5': (6.465,0.293,77.700)
O3': (4.024,-1.448,79.999)
OP2: (6.472,0.907,75.297)
C3': (4.496,-0.124,79.776)
C1': (5.011,1.964,80.742)
C5': (6.849,-0.448,78.852)
O6: (3.100,6.848,77.814)
O4': (6.228,1.351,80.345)
C8: (5.390,3.311,78.628)
C2: (2.086,5.190,80.789)
C6: (3.095,5.987,78.703)
C5: (3.931,4.848,78.837)
C4: (3.760,4.021,79.928)
P: (7.196,0.093,76.301)
C4': (5.993,-0.048,80.030)
C2': (3.948,0.865,80.793)
O2': (3.914,0.333,82.101)
N1: (2.184,6.077,79.747)
N2: (1.128,5.446,81.699)
N3: (2.864,4.130,80.931)
N7: (4.955,4.384,78.023)
N9: (4.724,3.045,79.801)
O5': (6.465,0.293,77.700)
O3': (4.024,-1.448,79.999)
C4: (1.594,10.049,77.045)
N3: (1.387,9.074,77.998)
OP1: (-3.399,15.753,77.875)
OP2: (-1.399,14.776,76.595)
C2: (0.362,9.010,78.907)
C1': (-1.696,10.021,79.764)
C3': (-1.907,12.056,80.956)
O5': (-2.463,13.503,78.454)
O4': (-2.763,10.763,79.194)
C5': (-3.554,13.048,79.255)
P: (-2.684,14.579,77.300)
C4': (-3.135,11.851,80.082)
C2': (-1.396,10.630,81.137)
O2': (-2.101,9.916,82.134)
N1: (-0.556,10.051,78.834)
O4: (2.525,9.924,76.241)
O2: (0.272,8.106,79.716)
C6: (-0.400,11.063,77.919)
C5: (0.615,11.100,77.047)
O3': (-2.267,12.635,82.209)
N3: (1.387,9.074,77.998)
OP1: (-3.399,15.753,77.875)
OP2: (-1.399,14.776,76.595)
C2: (0.362,9.010,78.907)
C1': (-1.696,10.021,79.764)
C3': (-1.907,12.056,80.956)
O5': (-2.463,13.503,78.454)
O4': (-2.763,10.763,79.194)
C5': (-3.554,13.048,79.255)
P: (-2.684,14.579,77.300)
C4': (-3.135,11.851,80.082)
C2': (-1.396,10.630,81.137)
O2': (-2.101,9.916,82.134)
N1: (-0.556,10.051,78.834)
O4: (2.525,9.924,76.241)
O2: (0.272,8.106,79.716)
C6: (-0.400,11.063,77.919)
C5: (0.615,11.100,77.047)
O3': (-2.267,12.635,82.209)
Image (generated by PyMOL):