Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A1401:A1587
Extra
PDB:
ATOM 1 O3' G A1400 -2.060 -28.992 47.418 1.00 7.94 O
ATOM 2 P G A1401 -0.835 -28.362 48.229 1.00 11.86 P
ATOM 3 OP1 G A1401 -1.411 -27.512 49.324 1.00 11.86 O
ATOM 4 OP2 G A1401 0.090 -27.749 47.230 1.00 11.86 O
ATOM 5 O5' G A1401 -0.191 -29.649 48.842 1.00 11.86 O
ATOM 6 C5' G A1401 -1.027 -30.633 49.387 1.00 11.86 C
ATOM 7 C4' G A1401 -0.223 -31.715 49.998 1.00 11.86 C
ATOM 8 O4' G A1401 0.129 -32.670 48.973 1.00 11.86 O
ATOM 9 C3' G A1401 1.116 -31.284 50.579 1.00 11.86 C
ATOM 10 O3' G A1401 1.008 -30.710 51.881 1.00 11.86 O
ATOM 11 C2' G A1401 1.893 -32.586 50.527 1.00 11.86 C
ATOM 12 O2' G A1401 1.425 -33.496 51.530 1.00 11.86 O
ATOM 13 C1' G A1401 1.444 -33.109 49.166 1.00 11.86 C
ATOM 14 N9 G A1401 2.230 -32.567 48.058 1.00 11.40 N
ATOM 15 C8 G A1401 1.753 -31.547 47.266 1.00 11.40 C
ATOM 16 N7 G A1401 2.578 -31.229 46.296 1.00 11.40 N
ATOM 17 C5 G A1401 3.635 -32.119 46.461 1.00 11.40 C
ATOM 18 C6 G A1401 4.806 -32.255 45.705 1.00 11.40 C
ATOM 19 O6 G A1401 5.136 -31.596 44.718 1.00 11.40 O
ATOM 20 N1 G A1401 5.621 -33.254 46.196 1.00 11.40 N
ATOM 21 C2 G A1401 5.340 -34.028 47.281 1.00 11.40 C
ATOM 22 N2 G A1401 6.256 -34.952 47.590 1.00 11.40 N
ATOM 23 N3 G A1401 4.244 -33.932 48.002 1.00 11.40 N
ATOM 24 C4 G A1401 3.439 -32.963 47.536 1.00 11.40 C
ATOM 25 P U A1402 2.216 -29.830 52.494 1.00 20.54 P
ATOM 26 OP1 U A1402 1.955 -29.702 53.963 1.00 20.54 O
ATOM 27 OP2 U A1402 2.331 -28.592 51.670 1.00 20.54 O
ATOM 28 O5' U A1402 3.491 -30.766 52.238 1.00 20.54 O
TER
ATOM 1 O3' A B1586 14.843 -34.744 42.128 1.00 29.44 O
ATOM 2 P U B1587 14.062 -35.764 41.158 1.00 28.13 P
ATOM 3 OP1 U B1587 15.023 -36.820 40.767 1.00 28.13 O
ATOM 4 OP2 U B1587 13.416 -34.954 40.089 1.00 28.13 O
ATOM 5 O5' U B1587 12.962 -36.368 42.130 1.00 28.13 O
ATOM 6 C5' U B1587 13.343 -36.918 43.376 1.00 28.13 C
ATOM 7 C4' U B1587 12.335 -36.614 44.450 1.00 28.13 C
ATOM 8 O4' U B1587 12.045 -35.199 44.481 1.00 28.13 O
ATOM 9 C3' U B1587 10.969 -37.234 44.280 1.00 28.13 C
ATOM 10 O3' U B1587 10.950 -38.614 44.568 1.00 28.13 O
ATOM 11 C2' U B1587 10.119 -36.384 45.210 1.00 28.13 C
ATOM 12 O2' U B1587 10.335 -36.739 46.569 1.00 28.13 O
ATOM 13 C1' U B1587 10.726 -35.004 44.962 1.00 28.13 C
ATOM 14 N1 U B1587 9.964 -34.217 43.964 1.00 28.21 N
ATOM 15 C2 U B1587 8.776 -33.660 44.408 1.00 28.21 C
ATOM 16 O2 U B1587 8.359 -33.833 45.543 1.00 28.21 O
ATOM 17 N3 U B1587 8.095 -32.909 43.479 1.00 28.21 N
ATOM 18 C4 U B1587 8.477 -32.660 42.173 1.00 28.21 C
ATOM 19 O4 U B1587 7.736 -31.963 41.453 1.00 28.21 O
ATOM 20 C5 U B1587 9.731 -33.262 41.792 1.00 28.21 C
ATOM 21 C6 U B1587 10.416 -33.997 42.679 1.00 28.21 C
ATOM 22 P C B1588 10.623 -39.661 43.389 1.00 27.96 P
ATOM 23 OP1 C B1588 11.442 -40.888 43.645 1.00 27.96 O
ATOM 24 OP2 C B1588 10.801 -38.937 42.081 1.00 27.96 O
ATOM 25 O5' C B1588 9.084 -39.975 43.644 1.00 27.96 O
TER
ATOM 2 P G A1401 -0.835 -28.362 48.229 1.00 11.86 P
ATOM 3 OP1 G A1401 -1.411 -27.512 49.324 1.00 11.86 O
ATOM 4 OP2 G A1401 0.090 -27.749 47.230 1.00 11.86 O
ATOM 5 O5' G A1401 -0.191 -29.649 48.842 1.00 11.86 O
ATOM 6 C5' G A1401 -1.027 -30.633 49.387 1.00 11.86 C
ATOM 7 C4' G A1401 -0.223 -31.715 49.998 1.00 11.86 C
ATOM 8 O4' G A1401 0.129 -32.670 48.973 1.00 11.86 O
ATOM 9 C3' G A1401 1.116 -31.284 50.579 1.00 11.86 C
ATOM 10 O3' G A1401 1.008 -30.710 51.881 1.00 11.86 O
ATOM 11 C2' G A1401 1.893 -32.586 50.527 1.00 11.86 C
ATOM 12 O2' G A1401 1.425 -33.496 51.530 1.00 11.86 O
ATOM 13 C1' G A1401 1.444 -33.109 49.166 1.00 11.86 C
ATOM 14 N9 G A1401 2.230 -32.567 48.058 1.00 11.40 N
ATOM 15 C8 G A1401 1.753 -31.547 47.266 1.00 11.40 C
ATOM 16 N7 G A1401 2.578 -31.229 46.296 1.00 11.40 N
ATOM 17 C5 G A1401 3.635 -32.119 46.461 1.00 11.40 C
ATOM 18 C6 G A1401 4.806 -32.255 45.705 1.00 11.40 C
ATOM 19 O6 G A1401 5.136 -31.596 44.718 1.00 11.40 O
ATOM 20 N1 G A1401 5.621 -33.254 46.196 1.00 11.40 N
ATOM 21 C2 G A1401 5.340 -34.028 47.281 1.00 11.40 C
ATOM 22 N2 G A1401 6.256 -34.952 47.590 1.00 11.40 N
ATOM 23 N3 G A1401 4.244 -33.932 48.002 1.00 11.40 N
ATOM 24 C4 G A1401 3.439 -32.963 47.536 1.00 11.40 C
ATOM 25 P U A1402 2.216 -29.830 52.494 1.00 20.54 P
ATOM 26 OP1 U A1402 1.955 -29.702 53.963 1.00 20.54 O
ATOM 27 OP2 U A1402 2.331 -28.592 51.670 1.00 20.54 O
ATOM 28 O5' U A1402 3.491 -30.766 52.238 1.00 20.54 O
TER
ATOM 1 O3' A B1586 14.843 -34.744 42.128 1.00 29.44 O
ATOM 2 P U B1587 14.062 -35.764 41.158 1.00 28.13 P
ATOM 3 OP1 U B1587 15.023 -36.820 40.767 1.00 28.13 O
ATOM 4 OP2 U B1587 13.416 -34.954 40.089 1.00 28.13 O
ATOM 5 O5' U B1587 12.962 -36.368 42.130 1.00 28.13 O
ATOM 6 C5' U B1587 13.343 -36.918 43.376 1.00 28.13 C
ATOM 7 C4' U B1587 12.335 -36.614 44.450 1.00 28.13 C
ATOM 8 O4' U B1587 12.045 -35.199 44.481 1.00 28.13 O
ATOM 9 C3' U B1587 10.969 -37.234 44.280 1.00 28.13 C
ATOM 10 O3' U B1587 10.950 -38.614 44.568 1.00 28.13 O
ATOM 11 C2' U B1587 10.119 -36.384 45.210 1.00 28.13 C
ATOM 12 O2' U B1587 10.335 -36.739 46.569 1.00 28.13 O
ATOM 13 C1' U B1587 10.726 -35.004 44.962 1.00 28.13 C
ATOM 14 N1 U B1587 9.964 -34.217 43.964 1.00 28.21 N
ATOM 15 C2 U B1587 8.776 -33.660 44.408 1.00 28.21 C
ATOM 16 O2 U B1587 8.359 -33.833 45.543 1.00 28.21 O
ATOM 17 N3 U B1587 8.095 -32.909 43.479 1.00 28.21 N
ATOM 18 C4 U B1587 8.477 -32.660 42.173 1.00 28.21 C
ATOM 19 O4 U B1587 7.736 -31.963 41.453 1.00 28.21 O
ATOM 20 C5 U B1587 9.731 -33.262 41.792 1.00 28.21 C
ATOM 21 C6 U B1587 10.416 -33.997 42.679 1.00 28.21 C
ATOM 22 P C B1588 10.623 -39.661 43.389 1.00 27.96 P
ATOM 23 OP1 C B1588 11.442 -40.888 43.645 1.00 27.96 O
ATOM 24 OP2 C B1588 10.801 -38.937 42.081 1.00 27.96 O
ATOM 25 O5' C B1588 9.084 -39.975 43.644 1.00 27.96 O
TER
Atoms:
OP1: (-1.411,-27.512,49.324)
OP2: (0.090,-27.749,47.230)
C3': (1.116,-31.284,50.579)
C1': (1.444,-33.109,49.166)
C5': (-1.027,-30.633,49.387)
O6: (5.136,-31.596,44.718)
O4': (0.129,-32.670,48.973)
C8: (1.753,-31.547,47.266)
C2: (5.340,-34.028,47.281)
C6: (4.806,-32.255,45.705)
C5: (3.635,-32.119,46.461)
C4: (3.439,-32.963,47.536)
P: (-0.835,-28.362,48.229)
C4': (-0.223,-31.715,49.998)
C2': (1.893,-32.586,50.527)
O2': (1.425,-33.496,51.530)
N1: (5.621,-33.254,46.196)
N2: (6.256,-34.952,47.590)
N3: (4.244,-33.932,48.002)
N7: (2.578,-31.229,46.296)
N9: (2.230,-32.567,48.058)
O5': (-0.191,-29.649,48.842)
O3': (1.008,-30.710,51.881)
OP2: (0.090,-27.749,47.230)
C3': (1.116,-31.284,50.579)
C1': (1.444,-33.109,49.166)
C5': (-1.027,-30.633,49.387)
O6: (5.136,-31.596,44.718)
O4': (0.129,-32.670,48.973)
C8: (1.753,-31.547,47.266)
C2: (5.340,-34.028,47.281)
C6: (4.806,-32.255,45.705)
C5: (3.635,-32.119,46.461)
C4: (3.439,-32.963,47.536)
P: (-0.835,-28.362,48.229)
C4': (-0.223,-31.715,49.998)
C2': (1.893,-32.586,50.527)
O2': (1.425,-33.496,51.530)
N1: (5.621,-33.254,46.196)
N2: (6.256,-34.952,47.590)
N3: (4.244,-33.932,48.002)
N7: (2.578,-31.229,46.296)
N9: (2.230,-32.567,48.058)
O5': (-0.191,-29.649,48.842)
O3': (1.008,-30.710,51.881)
C4: (8.477,-32.660,42.173)
N3: (8.095,-32.909,43.479)
OP1: (15.023,-36.820,40.767)
OP2: (13.416,-34.954,40.089)
C2: (8.776,-33.660,44.408)
C1': (10.726,-35.004,44.962)
C3': (10.969,-37.234,44.280)
O5': (12.962,-36.368,42.130)
O4': (12.045,-35.199,44.481)
C5': (13.343,-36.918,43.376)
P: (14.062,-35.764,41.158)
C4': (12.335,-36.614,44.450)
C2': (10.119,-36.384,45.210)
O2': (10.335,-36.739,46.569)
N1: (9.964,-34.217,43.964)
O4: (7.736,-31.963,41.453)
O2: (8.359,-33.833,45.543)
C6: (10.416,-33.997,42.679)
C5: (9.731,-33.262,41.792)
O3': (10.950,-38.614,44.568)
N3: (8.095,-32.909,43.479)
OP1: (15.023,-36.820,40.767)
OP2: (13.416,-34.954,40.089)
C2: (8.776,-33.660,44.408)
C1': (10.726,-35.004,44.962)
C3': (10.969,-37.234,44.280)
O5': (12.962,-36.368,42.130)
O4': (12.045,-35.199,44.481)
C5': (13.343,-36.918,43.376)
P: (14.062,-35.764,41.158)
C4': (12.335,-36.614,44.450)
C2': (10.119,-36.384,45.210)
O2': (10.335,-36.739,46.569)
N1: (9.964,-34.217,43.964)
O4: (7.736,-31.963,41.453)
O2: (8.359,-33.833,45.543)
C6: (10.416,-33.997,42.679)
C5: (9.731,-33.262,41.792)
O3': (10.950,-38.614,44.568)
Image (generated by PyMOL):