Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A1007:A1025
Extra
PDB:
ATOM 1 O3' U A1006 46.366 96.315 105.072 1.00 35.78 O
ATOM 2 P G A1007 46.854 95.198 106.103 1.00 35.34 P
ATOM 3 OP1 G A1007 47.117 95.885 107.391 1.00 36.56 O
ATOM 4 OP2 G A1007 47.952 94.474 105.426 1.00 35.81 O
ATOM 5 O5' G A1007 45.561 94.289 106.264 1.00 34.69 O
ATOM 6 C5' G A1007 44.394 94.833 106.893 1.00 34.65 C
ATOM 7 C4' G A1007 43.259 93.836 106.904 1.00 36.67 C
ATOM 8 O4' G A1007 42.749 93.600 105.566 1.00 38.13 O
ATOM 9 C3' G A1007 43.559 92.452 107.440 1.00 35.14 C
ATOM 10 O3' G A1007 43.577 92.456 108.843 1.00 35.44 O
ATOM 11 C2' G A1007 42.420 91.628 106.852 1.00 36.04 C
ATOM 12 O2' G A1007 41.173 91.789 107.496 1.00 35.48 O
ATOM 13 C1' G A1007 42.299 92.262 105.470 1.00 35.32 C
ATOM 14 N9 G A1007 43.126 91.596 104.483 1.00 34.66 N
ATOM 15 C8 G A1007 44.358 91.983 104.010 1.00 34.58 C
ATOM 16 N7 G A1007 44.806 91.204 103.069 1.00 34.37 N
ATOM 17 C5 G A1007 43.816 90.240 102.937 1.00 33.94 C
ATOM 18 C6 G A1007 43.718 89.142 102.077 1.00 34.03 C
ATOM 19 O6 G A1007 44.522 88.757 101.224 1.00 35.10 O
ATOM 20 N1 G A1007 42.527 88.452 102.275 1.00 33.45 N
ATOM 21 C2 G A1007 41.557 88.780 103.189 1.00 34.18 C
ATOM 22 N2 G A1007 40.444 88.016 103.195 1.00 38.04 N
ATOM 23 N3 G A1007 41.654 89.779 104.012 1.00 32.45 N
ATOM 24 C4 G A1007 42.790 90.469 103.825 1.00 33.90 C
ATOM 25 P C A1008 44.547 91.451 109.611 1.00 36.25 P
ATOM 26 OP1 C A1008 44.466 91.766 111.050 1.00 35.45 O
ATOM 27 OP2 C A1008 45.856 91.446 108.931 1.00 38.05 O
ATOM 28 O5' C A1008 43.921 90.025 109.319 1.00 36.25 O
TER
ATOM 1 O3' G B1024 44.129 79.968 96.526 1.00 38.92 O
ATOM 2 P U B1025 43.323 80.978 95.570 1.00 43.39 P
ATOM 3 OP1 U B1025 42.473 80.130 94.715 1.00 42.50 O
ATOM 4 OP2 U B1025 44.250 81.960 94.956 1.00 40.68 O
ATOM 5 O5' U B1025 42.379 81.773 96.565 1.00 41.10 O
ATOM 6 C5' U B1025 41.348 81.086 97.276 1.00 40.87 C
ATOM 7 C4' U B1025 40.775 81.978 98.328 1.00 40.47 C
ATOM 8 O4' U B1025 41.840 82.348 99.227 1.00 40.65 O
ATOM 9 C3' U B1025 40.237 83.309 97.844 1.00 39.58 C
ATOM 10 O3' U B1025 38.912 83.143 97.404 1.00 40.48 O
ATOM 11 C2' U B1025 40.285 84.117 99.122 1.00 39.61 C
ATOM 12 O2' U B1025 39.307 83.666 100.026 1.00 40.21 O
ATOM 13 C1' U B1025 41.626 83.663 99.681 1.00 40.26 C
ATOM 14 N1 U B1025 42.707 84.512 99.175 1.00 40.99 N
ATOM 15 C2 U B1025 42.929 85.680 99.849 1.00 41.63 C
ATOM 16 O2 U B1025 42.268 86.027 100.820 1.00 43.65 O
ATOM 17 N3 U B1025 43.946 86.441 99.351 1.00 40.77 N
ATOM 18 C4 U B1025 44.741 86.167 98.269 1.00 40.32 C
ATOM 19 O4 U B1025 45.638 86.951 97.978 1.00 40.25 O
ATOM 20 C5 U B1025 44.450 84.946 97.609 1.00 40.73 C
ATOM 21 C6 U B1025 43.469 84.171 98.073 1.00 40.90 C
ATOM 22 P A B1026 38.342 84.047 96.206 1.00 43.38 P
ATOM 23 OP1 A B1026 37.246 83.218 95.652 1.00 41.92 O
ATOM 24 OP2 A B1026 39.452 84.487 95.323 1.00 41.47 O
ATOM 25 O5' A B1026 37.715 85.326 96.927 1.00 41.28 O
TER
ATOM 2 P G A1007 46.854 95.198 106.103 1.00 35.34 P
ATOM 3 OP1 G A1007 47.117 95.885 107.391 1.00 36.56 O
ATOM 4 OP2 G A1007 47.952 94.474 105.426 1.00 35.81 O
ATOM 5 O5' G A1007 45.561 94.289 106.264 1.00 34.69 O
ATOM 6 C5' G A1007 44.394 94.833 106.893 1.00 34.65 C
ATOM 7 C4' G A1007 43.259 93.836 106.904 1.00 36.67 C
ATOM 8 O4' G A1007 42.749 93.600 105.566 1.00 38.13 O
ATOM 9 C3' G A1007 43.559 92.452 107.440 1.00 35.14 C
ATOM 10 O3' G A1007 43.577 92.456 108.843 1.00 35.44 O
ATOM 11 C2' G A1007 42.420 91.628 106.852 1.00 36.04 C
ATOM 12 O2' G A1007 41.173 91.789 107.496 1.00 35.48 O
ATOM 13 C1' G A1007 42.299 92.262 105.470 1.00 35.32 C
ATOM 14 N9 G A1007 43.126 91.596 104.483 1.00 34.66 N
ATOM 15 C8 G A1007 44.358 91.983 104.010 1.00 34.58 C
ATOM 16 N7 G A1007 44.806 91.204 103.069 1.00 34.37 N
ATOM 17 C5 G A1007 43.816 90.240 102.937 1.00 33.94 C
ATOM 18 C6 G A1007 43.718 89.142 102.077 1.00 34.03 C
ATOM 19 O6 G A1007 44.522 88.757 101.224 1.00 35.10 O
ATOM 20 N1 G A1007 42.527 88.452 102.275 1.00 33.45 N
ATOM 21 C2 G A1007 41.557 88.780 103.189 1.00 34.18 C
ATOM 22 N2 G A1007 40.444 88.016 103.195 1.00 38.04 N
ATOM 23 N3 G A1007 41.654 89.779 104.012 1.00 32.45 N
ATOM 24 C4 G A1007 42.790 90.469 103.825 1.00 33.90 C
ATOM 25 P C A1008 44.547 91.451 109.611 1.00 36.25 P
ATOM 26 OP1 C A1008 44.466 91.766 111.050 1.00 35.45 O
ATOM 27 OP2 C A1008 45.856 91.446 108.931 1.00 38.05 O
ATOM 28 O5' C A1008 43.921 90.025 109.319 1.00 36.25 O
TER
ATOM 1 O3' G B1024 44.129 79.968 96.526 1.00 38.92 O
ATOM 2 P U B1025 43.323 80.978 95.570 1.00 43.39 P
ATOM 3 OP1 U B1025 42.473 80.130 94.715 1.00 42.50 O
ATOM 4 OP2 U B1025 44.250 81.960 94.956 1.00 40.68 O
ATOM 5 O5' U B1025 42.379 81.773 96.565 1.00 41.10 O
ATOM 6 C5' U B1025 41.348 81.086 97.276 1.00 40.87 C
ATOM 7 C4' U B1025 40.775 81.978 98.328 1.00 40.47 C
ATOM 8 O4' U B1025 41.840 82.348 99.227 1.00 40.65 O
ATOM 9 C3' U B1025 40.237 83.309 97.844 1.00 39.58 C
ATOM 10 O3' U B1025 38.912 83.143 97.404 1.00 40.48 O
ATOM 11 C2' U B1025 40.285 84.117 99.122 1.00 39.61 C
ATOM 12 O2' U B1025 39.307 83.666 100.026 1.00 40.21 O
ATOM 13 C1' U B1025 41.626 83.663 99.681 1.00 40.26 C
ATOM 14 N1 U B1025 42.707 84.512 99.175 1.00 40.99 N
ATOM 15 C2 U B1025 42.929 85.680 99.849 1.00 41.63 C
ATOM 16 O2 U B1025 42.268 86.027 100.820 1.00 43.65 O
ATOM 17 N3 U B1025 43.946 86.441 99.351 1.00 40.77 N
ATOM 18 C4 U B1025 44.741 86.167 98.269 1.00 40.32 C
ATOM 19 O4 U B1025 45.638 86.951 97.978 1.00 40.25 O
ATOM 20 C5 U B1025 44.450 84.946 97.609 1.00 40.73 C
ATOM 21 C6 U B1025 43.469 84.171 98.073 1.00 40.90 C
ATOM 22 P A B1026 38.342 84.047 96.206 1.00 43.38 P
ATOM 23 OP1 A B1026 37.246 83.218 95.652 1.00 41.92 O
ATOM 24 OP2 A B1026 39.452 84.487 95.323 1.00 41.47 O
ATOM 25 O5' A B1026 37.715 85.326 96.927 1.00 41.28 O
TER
Atoms:
OP1: (47.117,95.885,107.391)
OP2: (47.952,94.474,105.426)
C3': (43.559,92.452,107.440)
C1': (42.299,92.262,105.470)
C5': (44.394,94.833,106.893)
O6: (44.522,88.757,101.224)
O4': (42.749,93.600,105.566)
C8: (44.358,91.983,104.010)
C2: (41.557,88.780,103.189)
C6: (43.718,89.142,102.077)
C5: (43.816,90.240,102.937)
C4: (42.790,90.469,103.825)
P: (46.854,95.198,106.103)
C4': (43.259,93.836,106.904)
C2': (42.420,91.628,106.852)
O2': (41.173,91.789,107.496)
N1: (42.527,88.452,102.275)
N2: (40.444,88.016,103.195)
N3: (41.654,89.779,104.012)
N7: (44.806,91.204,103.069)
N9: (43.126,91.596,104.483)
O5': (45.561,94.289,106.264)
O3': (43.577,92.456,108.843)
OP2: (47.952,94.474,105.426)
C3': (43.559,92.452,107.440)
C1': (42.299,92.262,105.470)
C5': (44.394,94.833,106.893)
O6: (44.522,88.757,101.224)
O4': (42.749,93.600,105.566)
C8: (44.358,91.983,104.010)
C2: (41.557,88.780,103.189)
C6: (43.718,89.142,102.077)
C5: (43.816,90.240,102.937)
C4: (42.790,90.469,103.825)
P: (46.854,95.198,106.103)
C4': (43.259,93.836,106.904)
C2': (42.420,91.628,106.852)
O2': (41.173,91.789,107.496)
N1: (42.527,88.452,102.275)
N2: (40.444,88.016,103.195)
N3: (41.654,89.779,104.012)
N7: (44.806,91.204,103.069)
N9: (43.126,91.596,104.483)
O5': (45.561,94.289,106.264)
O3': (43.577,92.456,108.843)
C4: (44.741,86.167,98.269)
N3: (43.946,86.441,99.351)
OP1: (42.473,80.130,94.715)
OP2: (44.250,81.960,94.956)
C2: (42.929,85.680,99.849)
C1': (41.626,83.663,99.681)
C3': (40.237,83.309,97.844)
O5': (42.379,81.773,96.565)
O4': (41.840,82.348,99.227)
C5': (41.348,81.086,97.276)
P: (43.323,80.978,95.570)
C4': (40.775,81.978,98.328)
C2': (40.285,84.117,99.122)
O2': (39.307,83.666,100.026)
N1: (42.707,84.512,99.175)
O4: (45.638,86.951,97.978)
O2: (42.268,86.027,100.820)
C6: (43.469,84.171,98.073)
C5: (44.450,84.946,97.609)
O3': (38.912,83.143,97.404)
N3: (43.946,86.441,99.351)
OP1: (42.473,80.130,94.715)
OP2: (44.250,81.960,94.956)
C2: (42.929,85.680,99.849)
C1': (41.626,83.663,99.681)
C3': (40.237,83.309,97.844)
O5': (42.379,81.773,96.565)
O4': (41.840,82.348,99.227)
C5': (41.348,81.086,97.276)
P: (43.323,80.978,95.570)
C4': (40.775,81.978,98.328)
C2': (40.285,84.117,99.122)
O2': (39.307,83.666,100.026)
N1: (42.707,84.512,99.175)
O4: (45.638,86.951,97.978)
O2: (42.268,86.027,100.820)
C6: (43.469,84.171,98.073)
C5: (44.450,84.946,97.609)
O3': (38.912,83.143,97.404)
Image (generated by PyMOL):